Wall clock time and date at job start Mon Mar 30 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48501 * 109.46634 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47204 * 300.00285 * 3 2 1 6 6 H 1.48495 * 109.47016 * 60.00184 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99906 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.57445 * 60.15913 * 9 7 2 11 11 C 1.53123 * 109.52244 * 300.00011 * 9 7 2 12 12 C 1.53039 * 109.31189 * 297.77266 * 11 9 7 13 13 N 1.46856 * 109.51787 * 300.79882 * 12 11 9 14 14 C 1.46846 * 111.19871 * 61.74404 * 13 12 11 15 15 H 1.09004 * 109.45906 * 58.25833 * 14 13 12 16 16 C 1.50696 * 109.46446 * 178.23649 * 14 13 12 17 17 C 1.38263 * 119.99885 * 220.00191 * 16 14 13 18 18 C 1.38214 * 120.02790 * 179.97438 * 17 16 14 19 19 C 1.38232 * 120.01517 * 359.97438 * 18 17 16 20 20 C 1.38326 * 119.98639 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01564 * 179.97438 * 20 19 18 22 22 C 1.38192 * 119.98889 * 39.72614 * 16 14 13 23 23 C 1.53030 * 109.52435 * 298.25760 * 14 13 12 24 24 H 0.97001 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.50371 * 177.80816 * 11 9 7 26 26 H 1.09003 * 109.50070 * 57.72976 * 11 9 7 27 27 H 1.09000 * 109.46148 * 60.81334 * 12 11 9 28 28 H 1.09002 * 109.46208 * 180.79044 * 12 11 9 29 29 H 1.00903 * 110.99558 * 185.83726 * 13 12 11 30 30 H 1.08001 * 119.98003 * 359.97378 * 17 16 14 31 31 H 1.08000 * 119.99052 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.00627 * 180.02562 * 19 18 17 33 33 H 1.07997 * 120.00803 * 0.02562 * 22 16 14 34 34 H 1.08997 * 109.50569 * 179.12357 * 23 14 13 35 35 H 1.09007 * 109.50504 * 299.19535 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5597 -0.8911 11 6 0.3708 -2.5818 1.2496 12 6 1.2583 -2.5571 2.4961 13 7 2.1906 -3.6911 2.4572 14 6 3.0789 -3.6084 1.2908 15 1 3.6337 -2.6706 1.3226 16 6 4.0453 -4.7645 1.3126 17 6 5.3660 -4.5683 0.9535 18 6 6.2530 -5.6281 0.9738 19 6 5.8203 -6.8848 1.3537 20 6 4.4991 -7.0817 1.7130 21 17 3.9547 -8.6598 2.1895 22 6 3.6126 -6.0193 1.6970 23 6 2.2458 -3.6643 0.0084 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2033 -3.5081 1.2299 26 1 -0.3110 -1.7315 1.2715 27 1 1.8218 -1.6244 2.5223 28 1 0.6349 -2.6299 3.3873 29 1 2.7220 -3.7518 3.3128 30 1 5.7046 -3.5865 0.6571 31 1 7.2846 -5.4741 0.6937 32 1 6.5136 -7.7128 1.3699 33 1 2.5819 -6.1716 1.9813 34 1 2.9040 -3.5872 -0.8569 35 1 1.7017 -4.6081 -0.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:42 Heat of formation + Delta-G solvation = -8.795673 kcal Electronic energy + Delta-G solvation = -17904.201281 eV Core-core repulsion = 15119.303741 eV Total energy + Delta-G solvation = -2784.897540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75808 -39.01205 -37.33031 -35.09081 -33.08281 -32.40396 -31.59287 -29.75162 -27.19243 -24.73379 -23.83191 -23.35754 -21.90921 -20.37824 -18.16431 -17.75302 -17.02490 -16.68631 -16.39077 -16.04002 -15.11539 -14.87312 -14.75019 -14.51630 -14.37357 -13.95555 -13.90426 -13.30167 -13.14054 -12.85653 -12.50652 -12.39295 -12.36841 -12.31124 -12.05589 -11.74354 -11.71560 -11.16324 -10.90783 -10.75266 -10.38452 -9.76682 -9.57335 -9.20734 -8.05869 -6.17449 0.24273 0.39401 1.21270 1.38554 1.42046 1.50990 2.43492 2.71923 3.22042 3.36540 3.80047 4.03467 4.21529 4.36927 4.39468 4.44741 4.54609 4.64301 4.65496 4.79368 4.90025 4.95876 5.09618 5.17763 5.25572 5.33976 5.39849 5.44703 5.59308 5.62906 5.66300 5.83500 5.91048 6.02922 6.33609 6.41764 6.69458 6.92313 7.49167 8.99096 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031951 B = 0.005076 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.139251 B = 5514.528000 C = 6038.889365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.011 1.011 11 C -0.101 4.101 12 C 0.084 3.916 13 N -0.677 5.677 14 C 0.145 3.855 15 H 0.039 0.961 16 C -0.073 4.073 17 C -0.120 4.120 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.046 4.046 21 Cl -0.075 7.075 22 C -0.094 4.094 23 C -0.084 4.084 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.341 0.659 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.047 0.953 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -12.046 4.862 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.140 4.140 12 C -0.045 4.045 13 N -0.308 5.308 14 C 0.035 3.965 15 H 0.057 0.943 16 C -0.074 4.074 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.134 4.134 20 C -0.072 4.072 21 Cl -0.046 7.046 22 C -0.113 4.113 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.066 0.934 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.780 -12.475 4.595 17.116 hybrid contribution 0.327 1.766 0.076 1.798 sum 11.108 -10.709 4.671 16.121 Atomic orbital electron populations 1.70016 1.07100 1.26778 1.51784 1.25632 0.95473 1.01899 0.95232 0.85721 0.79284 0.80563 0.77413 1.19117 1.21047 1.20876 1.21389 0.92602 0.91417 1.49515 0.92997 1.18743 0.93193 0.92829 0.93351 0.99261 1.21419 0.98160 0.98870 0.95536 1.21616 0.94328 0.90747 0.97796 1.60375 1.21025 1.44646 1.04744 1.20142 0.91052 0.93555 0.91710 0.94270 1.19932 0.94379 0.94253 0.98831 1.21386 0.92563 1.00550 0.99333 1.21352 1.00906 0.91174 0.98573 1.21310 0.93645 0.98943 0.99519 1.21060 0.95230 0.86461 1.04482 1.98351 1.90395 1.25324 1.90573 1.20911 1.00057 0.90923 0.99393 1.21479 0.97431 0.97868 0.95406 0.93219 0.95504 0.91776 0.96389 0.91414 0.84129 0.85107 0.82166 0.82920 0.85169 0.93418 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 11.31 21.45 0.24 -51.88 16 2 C 0.02 0.86 5.30 84.65 0.45 1.31 16 3 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.51 -26.99 6.74 25.60 0.17 -26.82 16 8 H 0.05 2.70 6.88 -2.91 -0.02 2.68 16 9 C 0.04 1.87 2.62 -11.43 -0.03 1.84 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.10 -4.81 5.41 30.65 0.17 -4.65 16 12 C 0.08 3.42 6.34 86.32 0.55 3.96 16 13 N -0.68 -23.79 5.73 -495.55 -2.84 -26.63 16 14 C 0.15 5.25 2.42 44.19 0.11 5.36 16 15 H 0.04 1.57 6.65 -2.38 -0.02 1.55 16 16 C -0.07 -2.20 4.86 -19.87 -0.10 -2.29 16 17 C -0.12 -3.06 9.67 22.27 0.22 -2.84 16 18 C -0.10 -2.04 10.04 22.26 0.22 -1.82 16 19 C -0.12 -2.36 9.83 22.29 0.22 -2.14 16 20 C -0.05 -1.13 6.32 22.32 0.14 -0.99 16 21 Cl -0.08 -1.71 28.96 -2.72 -0.08 -1.79 16 22 C -0.09 -2.68 9.11 22.29 0.20 -2.47 16 23 C -0.08 -3.50 4.81 30.67 0.15 -3.35 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 3.43 6.02 -2.39 -0.01 3.42 16 27 H 0.02 0.80 7.31 -2.39 -0.02 0.79 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.34 10.39 8.78 -89.69 -0.79 9.60 16 30 H 0.13 3.19 8.04 -2.91 -0.02 3.16 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 3.97 7.71 -2.91 -0.02 3.95 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -57.90 296.86 2.12 -55.78 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.31 Total: 14.73 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.46 Total: -34.91 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.60 Total: -78.51 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -57.90 2.12 -55.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.984 kcal (2) G-P(sol) polarization free energy of solvation -57.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds