Wall clock time and date at job start Mon Mar 30 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46975 * 2 1 4 4 C 1.50704 * 109.47446 * 119.99484 * 2 1 3 5 5 N 1.29418 * 124.66452 * 119.99925 * 4 2 1 6 6 C 1.30924 * 118.06810 * 180.02562 * 5 4 2 7 7 C 1.38484 * 112.66799 * 359.87859 * 6 5 4 8 8 S 1.71003 * 124.66908 * 300.02862 * 4 2 1 9 9 C 1.41527 * 123.31718 * 180.35584 * 7 6 5 10 10 O 1.21427 * 121.16357 * 181.43039 * 9 7 6 11 11 C 1.51289 * 117.58241 * 1.63666 * 9 7 6 12 12 C 1.52878 * 109.76886 * 328.40997 * 11 9 7 13 13 H 1.08994 * 109.30740 * 299.96504 * 12 11 9 14 14 C 1.50701 * 109.30622 * 180.37040 * 12 11 9 15 15 H 1.08002 * 119.99757 * 244.96551 * 14 12 11 16 16 C 1.37875 * 119.99912 * 64.96458 * 14 12 11 17 17 N 1.31510 * 119.99986 * 5.16168 * 16 14 12 18 18 Si 1.86802 * 119.99909 * 185.15653 * 16 14 12 19 19 H 1.48496 * 109.47143 * 85.00134 * 18 16 14 20 20 H 1.48507 * 109.47126 * 325.00110 * 18 16 14 21 21 H 1.48498 * 109.47084 * 205.00408 * 18 16 14 22 22 C 1.52070 * 126.47602 * 179.85757 * 6 5 4 23 23 H 1.08996 * 109.47218 * 60.00240 * 1 2 3 24 24 H 1.08996 * 109.46989 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47124 * 300.00105 * 1 2 3 26 26 H 1.08994 * 109.47597 * 239.99821 * 2 1 3 27 27 H 1.08999 * 109.46937 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46408 * 299.99720 * 3 2 1 29 29 H 1.08994 * 109.47104 * 59.99519 * 3 2 1 30 30 H 1.08999 * 109.24973 * 208.43090 * 11 9 7 31 31 H 1.09005 * 109.59778 * 88.60734 * 11 9 7 32 32 H 0.97004 * 119.99986 * 179.97438 * 17 16 14 33 33 H 1.09000 * 109.74660 * 87.78429 * 22 6 5 34 34 H 1.08996 * 109.75027 * 327.05397 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7796 -1.7669 1.2170 6 6 3.1419 -2.2799 2.3658 7 6 2.6442 -1.5721 3.4471 8 16 1.6932 -0.2315 2.8367 9 6 2.9030 -1.9252 4.7930 10 8 2.4253 -1.2914 5.7119 11 6 3.7999 -3.1175 5.0443 12 6 3.6311 -4.1379 3.9186 13 1 2.5928 -4.4675 3.8836 14 6 4.5216 -5.3243 4.1840 15 1 5.3386 -5.5469 3.5136 16 6 4.2934 -6.1256 5.2826 17 7 3.2401 -5.9163 6.0416 18 14 5.4803 -7.5085 5.6927 19 1 6.6074 -6.9714 6.4966 20 1 6.0061 -8.0987 4.4355 21 1 4.7710 -8.5548 6.4719 22 6 4.0092 -3.5118 2.5725 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.5280 -3.5776 5.9943 31 1 4.8391 -2.7911 5.0849 32 1 3.0793 -6.4802 6.8143 33 1 5.0606 -3.2246 2.5824 34 1 3.8298 -4.2274 1.7701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:51 Heat of formation + Delta-G solvation = -20.456805 kcal Electronic energy + Delta-G solvation = -17646.855592 eV Core-core repulsion = 14863.496094 eV Total energy + Delta-G solvation = -2783.359498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05383 -38.32175 -35.96922 -34.75681 -32.03496 -29.10049 -28.23207 -27.42664 -25.40063 -24.64474 -21.62233 -21.02814 -20.25141 -17.69376 -17.52592 -16.32236 -15.78133 -14.85842 -14.76245 -14.43058 -14.19590 -13.93278 -13.70895 -13.28939 -13.10959 -12.87670 -12.49190 -12.26095 -11.84228 -11.66950 -11.36429 -11.26929 -11.02157 -10.91292 -10.68962 -10.41667 -10.05474 -9.84138 -9.59400 -9.31307 -9.18044 -8.74041 -8.48028 -8.25512 -6.13951 -4.20633 0.40262 1.50636 2.00004 2.65670 3.26621 3.33929 3.35463 3.45839 3.94836 4.35039 4.65344 4.85950 4.91777 5.11196 5.24240 5.32481 5.35275 5.43451 5.54991 5.60548 5.74110 5.97357 5.99234 6.01006 6.16053 6.27868 6.40766 6.62755 6.70644 6.91853 7.48601 7.64902 7.83131 7.93509 8.18115 8.23880 8.83494 9.45581 10.94433 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035922 B = 0.005169 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.288107 B = 5415.368964 C = 5863.172947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.147 4.147 4 C 0.053 3.947 5 N -0.483 5.483 6 C 0.158 3.842 7 C -0.338 4.338 8 S 0.178 5.822 9 C 0.429 3.571 10 O -0.485 6.485 11 C -0.141 4.141 12 C 0.054 3.946 13 H 0.040 0.960 14 C -0.521 4.521 15 H 0.063 0.937 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.287 1.287 22 C -0.041 4.041 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.265 0.735 33 H 0.084 0.916 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 11.754 -10.634 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.206 4.206 4 C -0.221 4.221 5 N -0.197 5.197 6 C 0.018 3.982 7 C -0.459 4.459 8 S 0.440 5.560 9 C 0.309 3.691 10 O -0.364 6.364 11 C -0.181 4.181 12 C 0.035 3.965 13 H 0.059 0.941 14 C -0.558 4.558 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.080 4.080 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.894 12.693 -10.076 16.668 hybrid contribution 1.095 -1.569 0.339 1.943 sum -2.799 11.125 -9.738 15.047 Atomic orbital electron populations 1.21948 0.93130 1.02919 1.02649 1.19857 0.96109 0.95365 0.93009 1.21942 1.01882 0.94078 1.02661 1.27451 0.98977 0.96219 0.99459 1.65569 1.13816 1.10260 1.30086 1.22572 0.94653 0.96580 0.84367 1.26127 1.12883 1.04430 1.02463 1.83479 1.45928 1.26865 0.99764 1.21088 0.78723 0.84553 0.84698 1.90490 1.46245 1.52163 1.47538 1.22266 0.97522 0.92478 1.05862 1.18698 0.98893 0.92450 0.86430 0.94138 1.21009 1.14471 1.10093 1.10271 0.91844 1.25003 0.95117 0.97385 0.96281 1.69916 1.26052 1.39584 1.16725 0.86555 0.81017 0.81580 0.78577 1.20429 1.19798 1.21238 1.20946 0.96247 0.89349 1.01472 0.91148 0.91829 0.92132 0.88003 0.91932 0.91160 0.92139 0.86820 0.89942 0.92545 0.89789 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.09 37.16 0.34 -0.99 16 2 C -0.02 -0.23 3.34 -91.76 -0.31 -0.53 16 3 C -0.15 -1.27 9.09 37.16 0.34 -0.93 16 4 C 0.05 0.79 6.03 -13.29 -0.08 0.71 16 5 N -0.48 -8.63 10.46 -6.61 -0.07 -8.69 16 6 C 0.16 3.08 6.92 -82.21 -0.57 2.51 16 7 C -0.34 -6.77 6.26 -38.24 -0.24 -7.00 16 8 S 0.18 2.85 22.36 -107.50 -2.40 0.44 16 9 C 0.43 9.59 6.93 -32.77 -0.23 9.37 16 10 O -0.48 -11.67 17.83 5.43 0.10 -11.57 16 11 C -0.14 -3.27 5.18 -27.66 -0.14 -3.41 16 12 C 0.05 1.29 1.91 -91.73 -0.17 1.11 16 13 H 0.04 1.07 8.12 -51.93 -0.42 0.65 16 14 C -0.52 -13.26 8.48 -34.44 -0.29 -13.56 16 15 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 16 C 0.07 1.71 5.26 -17.82 -0.09 1.62 16 17 N -0.89 -24.55 11.90 55.43 0.66 -23.89 16 18 Si 0.90 20.32 29.54 -169.99 -5.02 15.29 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.04 -0.82 5.53 -27.10 -0.15 -0.97 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 26 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 30 H 0.11 2.96 6.65 -51.93 -0.35 2.61 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -29.25 299.22 -8.34 -37.59 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.51 Total: -1.60 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.60 Total: -12.08 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.59 Total: -32.59 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.10 Total: -11.57 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.40 Total: 0.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.25 -8.34 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.135 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds