Wall clock time and date at job start Mon Mar 30 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46975 * 2 1 4 4 C 1.50704 * 109.47446 * 119.99484 * 2 1 3 5 5 N 1.29418 * 124.66452 * 119.99925 * 4 2 1 6 6 C 1.30924 * 118.06810 * 180.02562 * 5 4 2 7 7 C 1.38484 * 112.66799 * 359.87859 * 6 5 4 8 8 S 1.71003 * 124.66908 * 300.02862 * 4 2 1 9 9 C 1.41527 * 123.31718 * 180.35584 * 7 6 5 10 10 O 1.21427 * 121.16357 * 181.43039 * 9 7 6 11 11 C 1.51289 * 117.58241 * 1.63666 * 9 7 6 12 12 C 1.52878 * 109.76886 * 328.40997 * 11 9 7 13 13 H 1.08994 * 109.30740 * 299.96504 * 12 11 9 14 14 C 1.50701 * 109.30622 * 180.37040 * 12 11 9 15 15 H 1.08002 * 119.99757 * 244.96551 * 14 12 11 16 16 C 1.37875 * 119.99912 * 64.96458 * 14 12 11 17 17 N 1.31510 * 119.99986 * 5.16168 * 16 14 12 18 18 Si 1.86802 * 119.99909 * 185.15653 * 16 14 12 19 19 H 1.48496 * 109.47143 * 85.00134 * 18 16 14 20 20 H 1.48507 * 109.47126 * 325.00110 * 18 16 14 21 21 H 1.48498 * 109.47084 * 205.00408 * 18 16 14 22 22 C 1.52070 * 126.47602 * 179.85757 * 6 5 4 23 23 H 1.08996 * 109.47218 * 60.00240 * 1 2 3 24 24 H 1.08996 * 109.46989 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47124 * 300.00105 * 1 2 3 26 26 H 1.08994 * 109.47597 * 239.99821 * 2 1 3 27 27 H 1.08999 * 109.46937 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46408 * 299.99720 * 3 2 1 29 29 H 1.08994 * 109.47104 * 59.99519 * 3 2 1 30 30 H 1.08999 * 109.24973 * 208.43090 * 11 9 7 31 31 H 1.09005 * 109.59778 * 88.60734 * 11 9 7 32 32 H 0.97004 * 119.99986 * 179.97438 * 17 16 14 33 33 H 1.09000 * 109.74660 * 87.78429 * 22 6 5 34 34 H 1.08996 * 109.75027 * 327.05397 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 2.7796 -1.7669 1.2170 6 6 3.1419 -2.2799 2.3658 7 6 2.6442 -1.5721 3.4471 8 16 1.6932 -0.2315 2.8367 9 6 2.9030 -1.9252 4.7930 10 8 2.4253 -1.2914 5.7119 11 6 3.7999 -3.1175 5.0443 12 6 3.6311 -4.1379 3.9186 13 1 2.5928 -4.4675 3.8836 14 6 4.5216 -5.3243 4.1840 15 1 5.3386 -5.5469 3.5136 16 6 4.2934 -6.1256 5.2826 17 7 3.2401 -5.9163 6.0416 18 14 5.4803 -7.5085 5.6927 19 1 6.6074 -6.9714 6.4966 20 1 6.0061 -8.0987 4.4355 21 1 4.7710 -8.5548 6.4719 22 6 4.0092 -3.5118 2.5725 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.5280 -3.5776 5.9943 31 1 4.8391 -2.7911 5.0849 32 1 3.0793 -6.4802 6.8143 33 1 5.0606 -3.2246 2.5824 34 1 3.8298 -4.2274 1.7701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:51 Heat of formation + Delta-G solvation = -37.196180 kcal Electronic energy + Delta-G solvation = -17647.581466 eV Core-core repulsion = 14863.496094 eV Total energy + Delta-G solvation = -2784.085372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57239 -39.94452 -37.35712 -36.15750 -33.89457 -30.73501 -29.88051 -28.09918 -27.26823 -26.00738 -23.16209 -22.55583 -21.55062 -19.26641 -19.05029 -18.16280 -17.27489 -16.57643 -16.35699 -15.73685 -15.48273 -15.33599 -15.25575 -14.76353 -14.61408 -14.22151 -13.90968 -13.34439 -13.01558 -12.84162 -12.73978 -12.68757 -12.37355 -12.34479 -12.16961 -11.97012 -11.82221 -11.58396 -11.40754 -10.82475 -10.59928 -10.56329 -10.44127 -9.67929 -8.15326 -6.28414 -1.03888 0.16223 0.61999 1.12831 1.46858 1.47932 1.57105 1.85069 2.43160 2.76338 3.15223 3.49917 3.65039 3.90359 3.99042 4.09277 4.24356 4.41942 4.44753 4.66046 4.70142 4.74042 4.85700 4.89102 4.91141 5.01950 5.10359 5.13742 5.28842 5.31039 5.53320 5.70841 5.84544 6.19974 6.42039 6.59340 6.83412 7.41733 8.92974 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035922 B = 0.005169 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.288107 B = 5415.368964 C = 5863.172947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.076 3.924 5 N -0.505 5.505 6 C 0.168 3.832 7 C -0.388 4.388 8 S 0.223 5.777 9 C 0.433 3.567 10 O -0.515 6.515 11 C -0.137 4.137 12 C 0.059 3.941 13 H 0.002 0.998 14 C -0.530 4.530 15 H 0.073 0.927 16 C 0.015 3.985 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.273 1.273 20 H -0.262 1.262 21 H -0.290 1.290 22 C -0.033 4.033 23 H 0.101 0.899 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.263 0.737 33 H 0.101 0.899 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 13.056 -13.070 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.203 4.203 4 C -0.197 4.197 5 N -0.219 5.219 6 C 0.026 3.974 7 C -0.510 4.510 8 S 0.485 5.515 9 C 0.316 3.684 10 O -0.397 6.397 11 C -0.177 4.177 12 C 0.039 3.961 13 H 0.020 0.980 14 C -0.568 4.568 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.186 1.186 21 H -0.216 1.216 22 C -0.073 4.073 23 H 0.120 0.880 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.678 14.006 -12.528 19.148 hybrid contribution 0.957 -1.890 0.958 2.325 sum -2.722 12.116 -11.570 16.972 Atomic orbital electron populations 1.21990 0.91463 1.02754 1.04342 1.20209 0.97311 0.96251 0.90888 1.21976 1.01565 0.92487 1.04313 1.28456 0.95947 0.94547 1.00724 1.65652 1.15545 1.11703 1.29050 1.22463 0.93911 0.96017 0.84987 1.25846 1.16222 1.07604 1.01301 1.83253 1.44354 1.24424 0.99468 1.20931 0.77893 0.83794 0.85791 1.90461 1.47578 1.53123 1.48523 1.22082 0.98562 0.93024 1.04011 1.18552 0.96390 0.92503 0.88618 0.97988 1.21407 1.14658 1.10497 1.10220 0.90876 1.25806 0.96485 0.99876 0.96292 1.70069 1.27938 1.40752 1.17263 0.85544 0.78867 0.78578 0.78553 1.19901 1.18632 1.21628 1.20758 0.97355 0.89858 0.99290 0.88005 0.92949 0.92001 0.87143 0.92520 0.88122 0.91975 0.90278 0.88761 0.92840 0.88127 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.09 71.98 0.65 -1.46 16 2 C -0.02 -0.43 3.34 -11.53 -0.04 -0.47 16 3 C -0.15 -1.92 9.09 71.99 0.65 -1.27 16 4 C 0.08 2.11 6.03 88.47 0.53 2.64 16 5 N -0.51 -17.22 10.46 -174.84 -1.83 -19.05 16 6 C 0.17 6.47 6.92 43.19 0.30 6.77 16 7 C -0.39 -15.62 6.26 23.14 0.14 -15.48 16 8 S 0.22 6.79 22.36 -56.49 -1.26 5.52 16 9 C 0.43 20.01 6.93 26.68 0.18 20.20 16 10 O -0.51 -25.67 17.83 -3.49 -0.06 -25.73 16 11 C -0.14 -6.60 5.18 29.99 0.16 -6.45 16 12 C 0.06 2.85 1.91 -11.51 -0.02 2.83 16 13 H 0.00 0.11 8.12 -2.39 -0.02 0.09 16 14 C -0.53 -27.33 8.48 25.60 0.22 -27.12 16 15 H 0.07 3.55 7.75 -2.91 -0.02 3.53 16 16 C 0.01 0.79 5.26 84.65 0.45 1.24 16 17 N -0.92 -53.00 11.90 21.45 0.26 -52.74 16 18 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 C -0.03 -1.33 5.53 30.35 0.17 -1.17 16 23 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.88 7.91 -2.38 -0.02 0.86 16 26 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.82 7.91 -2.39 -0.02 0.80 16 30 H 0.08 4.36 6.65 -2.39 -0.02 4.35 16 31 H 0.09 4.20 8.14 -2.38 -0.02 4.18 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.88 299.22 3.62 -61.25 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.10 Total: 6.46 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 3.40 Total: -19.73 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -1.57 Total: -71.79 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 6.79 SS G_CDS: -1.26 Total: 5.52 kcal Total: -64.88 3.62 -61.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.058 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds