Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99404 * 2 1 4 4 H 1.48508 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47484 * 300.00226 * 3 2 1 6 6 H 1.48503 * 109.47212 * 60.00521 * 3 2 1 7 7 C 1.37870 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99824 * 182.18602 * 7 2 1 9 9 C 1.50699 * 120.00326 * 2.18698 * 7 2 1 10 10 H 1.08998 * 109.47455 * 174.67789 * 9 7 2 11 11 C 1.50702 * 109.46857 * 294.67803 * 9 7 2 12 12 C 1.38237 * 119.98898 * 90.45003 * 11 9 7 13 13 C 1.38222 * 120.01542 * 179.70374 * 12 11 9 14 14 C 1.38352 * 119.98250 * 0.27257 * 13 12 11 15 15 Cl 1.73599 * 120.00972 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.97397 * 0.02562 * 14 13 12 17 17 C 1.38207 * 119.99134 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47312 * 54.67362 * 9 7 2 19 19 H 1.08999 * 110.64481 * 303.15852 * 18 9 7 20 20 C 1.54591 * 110.72449 * 180.02562 * 18 9 7 21 21 C 1.54000 * 105.14093 * 219.68525 * 20 18 9 22 22 N 1.47904 * 107.05680 * 358.77537 * 21 20 18 23 23 C 1.48535 * 105.81760 * 25.32916 * 22 21 20 24 24 H 0.96995 * 120.00516 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99479 * 359.97438 * 12 11 9 26 26 H 1.07998 * 120.00558 * 180.29602 * 13 12 11 27 27 H 1.08003 * 119.99954 * 180.02562 * 16 14 13 28 28 H 1.07997 * 119.99454 * 180.02562 * 17 16 14 29 29 H 1.09005 * 110.31120 * 338.60274 * 20 18 9 30 30 H 1.09002 * 110.30991 * 100.67390 * 20 18 9 31 31 H 1.08998 * 109.91381 * 118.12686 * 21 20 18 32 32 H 1.08999 * 109.91801 * 239.22699 * 21 20 18 33 33 H 1.00898 * 111.00095 * 145.83870 * 22 21 20 34 34 H 1.09000 * 110.66816 * 202.35376 * 23 22 21 35 35 H 1.09003 * 110.66637 * 79.22800 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0840 -1.1942 0.0351 9 6 1.2520 -2.4986 -0.0509 10 1 1.9596 -3.3231 -0.1390 11 6 0.4449 -2.6620 1.2112 12 6 -0.8536 -2.1914 1.2668 13 6 -1.5965 -2.3464 2.4221 14 6 -1.0381 -2.9677 3.5249 15 17 -1.9706 -3.1634 4.9761 16 6 0.2638 -3.4331 3.4708 17 6 1.0059 -3.2765 2.3154 18 6 0.3141 -2.5001 -1.2597 19 1 -0.3664 -1.6496 -1.2191 20 6 -0.4741 -3.8276 -1.3389 21 6 -0.5198 -4.1795 -2.8375 22 7 0.1769 -3.0929 -3.5597 23 6 1.1229 -2.4980 -2.5812 24 1 -0.4850 0.8400 0.0004 25 1 -1.2894 -1.7063 0.4058 26 1 -2.6126 -1.9829 2.4637 27 1 0.6999 -3.9185 4.3313 28 1 2.0219 -3.6401 2.2729 29 1 0.0437 -4.6089 -0.7824 30 1 -1.4832 -3.6922 -0.9497 31 1 -0.0108 -5.1273 -3.0119 32 1 -1.5551 -4.2471 -3.1716 33 1 0.6676 -3.4509 -4.3653 34 1 1.3856 -1.4803 -2.8699 35 1 2.0166 -3.1149 -2.4862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = 13.867915 kcal Electronic energy + Delta-G solvation = -18299.602126 eV Core-core repulsion = 15515.687353 eV Total energy + Delta-G solvation = -2783.914773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93523 -37.42742 -35.84448 -33.89285 -31.15975 -30.15972 -28.75076 -28.34972 -26.18174 -23.10878 -21.95566 -20.59320 -20.47333 -18.83754 -16.48562 -16.34009 -15.63323 -15.07381 -14.55434 -14.25881 -13.87833 -13.26971 -12.83533 -12.69075 -12.60884 -12.35534 -11.94769 -11.38382 -11.24093 -11.12294 -11.05574 -10.85026 -10.69791 -10.60842 -10.44300 -10.10783 -9.84638 -9.78178 -9.24929 -9.03422 -8.55833 -8.05152 -7.94655 -7.46787 -6.09373 -4.25193 2.17469 2.30312 2.81158 3.22193 3.31831 3.33749 4.31075 4.71163 4.93152 5.12495 5.48787 5.60389 5.66950 5.68416 5.79352 6.09769 6.13411 6.25498 6.33920 6.46377 6.51350 6.58268 6.67184 6.73185 6.80266 7.01917 7.05895 7.06833 7.19746 7.39128 7.49778 7.71183 7.81281 7.86894 7.93874 8.03627 8.22031 8.74472 9.41849 10.84124 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.008086 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.755191 B = 3461.852630 C = 4682.725529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.071 3.929 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.082 3.918 10 H 0.029 0.971 11 C -0.017 4.017 12 C -0.058 4.058 13 C -0.132 4.132 14 C -0.059 4.059 15 Cl -0.111 7.111 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.081 4.081 19 H 0.124 0.876 20 C -0.133 4.133 21 C 0.042 3.958 22 N -0.678 5.678 23 C 0.059 3.941 24 H 0.264 0.736 25 H 0.155 0.845 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.322 0.678 34 H 0.077 0.923 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -6.148 0.373 6.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.063 3.937 10 H 0.047 0.953 11 C -0.018 4.018 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.086 4.086 15 Cl -0.082 7.082 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.100 4.100 19 H 0.142 0.858 20 C -0.171 4.171 21 C -0.087 4.087 22 N -0.306 5.306 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.172 0.828 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.313 -5.514 0.543 6.004 hybrid contribution 1.118 0.285 0.457 1.241 sum -1.194 -5.230 1.000 5.457 Atomic orbital electron populations 1.69672 1.05783 1.26493 1.49256 1.24902 0.94862 0.99081 0.94305 0.86537 0.80160 0.83689 0.77709 1.19837 1.20807 1.21036 1.21053 0.92887 0.89746 1.50694 0.92249 1.17925 0.92058 0.95962 0.87719 0.95300 1.20512 0.93293 0.90904 0.97049 1.21525 0.93812 0.94623 0.97681 1.21038 1.00156 1.00904 0.92962 1.20700 0.93220 1.06942 0.87698 1.98287 1.74146 1.96752 1.39055 1.20699 0.92799 1.02745 0.98597 1.20890 0.99112 1.01522 0.92844 1.22306 0.97745 0.96853 0.93123 0.85815 1.22596 1.01051 0.99573 0.93890 1.22588 0.98693 0.92298 0.95124 1.63099 1.29703 1.29459 1.08355 1.22914 0.92762 0.98884 0.92413 0.92592 0.82799 0.86854 0.86914 0.86771 0.92837 0.92097 0.95560 0.91745 0.86380 0.90422 0.95597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.52 7.92 55.43 0.44 -21.09 16 2 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -12.35 8.25 -34.44 -0.28 -12.63 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.08 1.81 1.72 -92.92 -0.16 1.65 16 10 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 11 C -0.02 -0.36 4.17 -104.62 -0.44 -0.80 16 12 C -0.06 -1.23 6.72 -39.59 -0.27 -1.49 16 13 C -0.13 -2.59 9.83 -39.55 -0.39 -2.98 16 14 C -0.06 -1.12 6.32 -39.50 -0.25 -1.37 16 15 Cl -0.11 -1.83 28.96 -51.86 -1.50 -3.33 16 16 C -0.13 -2.41 9.83 -39.55 -0.39 -2.80 16 17 C -0.13 -2.49 9.70 -39.59 -0.38 -2.87 16 18 C -0.08 -1.67 1.69 -88.76 -0.15 -1.82 16 19 H 0.12 2.91 4.70 -51.93 -0.24 2.66 16 20 C -0.13 -2.40 5.46 -25.37 -0.14 -2.54 16 21 C 0.04 0.69 7.52 -2.75 -0.02 0.67 16 22 N -0.68 -11.66 7.51 -110.08 -0.83 -12.49 16 23 C 0.06 1.14 6.55 -1.90 -0.01 1.12 16 24 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 25 H 0.15 3.45 5.06 -52.48 -0.27 3.19 16 26 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 28 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.05 0.95 7.81 -51.93 -0.41 0.54 16 30 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.32 4.72 8.92 -39.29 -0.35 4.37 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.03 0.49 8.02 -51.93 -0.42 0.07 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -24.25 293.20 -10.05 -34.30 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.58 Total: 7.46 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -2.97 Total: -24.20 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: -0.39 Total: -33.58 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.50 Total: -3.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -24.25 -10.05 -34.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.164 kcal (2) G-P(sol) polarization free energy of solvation -24.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds