Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99404 * 2 1 4 4 H 1.48508 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47484 * 300.00226 * 3 2 1 6 6 H 1.48503 * 109.47212 * 60.00521 * 3 2 1 7 7 C 1.37870 * 120.00279 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99824 * 182.18602 * 7 2 1 9 9 C 1.50699 * 120.00326 * 2.18698 * 7 2 1 10 10 H 1.08998 * 109.47455 * 174.67789 * 9 7 2 11 11 C 1.50702 * 109.46857 * 294.67803 * 9 7 2 12 12 C 1.38237 * 119.98898 * 90.45003 * 11 9 7 13 13 C 1.38222 * 120.01542 * 179.70374 * 12 11 9 14 14 C 1.38352 * 119.98250 * 0.27257 * 13 12 11 15 15 Cl 1.73599 * 120.00972 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.97397 * 0.02562 * 14 13 12 17 17 C 1.38207 * 119.99134 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47312 * 54.67362 * 9 7 2 19 19 H 1.08999 * 110.64481 * 303.15852 * 18 9 7 20 20 C 1.54591 * 110.72449 * 180.02562 * 18 9 7 21 21 C 1.54000 * 105.14093 * 219.68525 * 20 18 9 22 22 N 1.47904 * 107.05680 * 358.77537 * 21 20 18 23 23 C 1.48535 * 105.81760 * 25.32916 * 22 21 20 24 24 H 0.96995 * 120.00516 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99479 * 359.97438 * 12 11 9 26 26 H 1.07998 * 120.00558 * 180.29602 * 13 12 11 27 27 H 1.08003 * 119.99954 * 180.02562 * 16 14 13 28 28 H 1.07997 * 119.99454 * 180.02562 * 17 16 14 29 29 H 1.09005 * 110.31120 * 338.60274 * 20 18 9 30 30 H 1.09002 * 110.30991 * 100.67390 * 20 18 9 31 31 H 1.08998 * 109.91381 * 118.12686 * 21 20 18 32 32 H 1.08999 * 109.91801 * 239.22699 * 21 20 18 33 33 H 1.00898 * 111.00095 * 145.83870 * 22 21 20 34 34 H 1.09000 * 110.66816 * 202.35376 * 23 22 21 35 35 H 1.09003 * 110.66637 * 79.22800 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0840 -1.1942 0.0351 9 6 1.2520 -2.4986 -0.0509 10 1 1.9596 -3.3231 -0.1390 11 6 0.4449 -2.6620 1.2112 12 6 -0.8536 -2.1914 1.2668 13 6 -1.5965 -2.3464 2.4221 14 6 -1.0381 -2.9677 3.5249 15 17 -1.9706 -3.1634 4.9761 16 6 0.2638 -3.4331 3.4708 17 6 1.0059 -3.2765 2.3154 18 6 0.3141 -2.5001 -1.2597 19 1 -0.3664 -1.6496 -1.2191 20 6 -0.4741 -3.8276 -1.3389 21 6 -0.5198 -4.1795 -2.8375 22 7 0.1769 -3.0929 -3.5597 23 6 1.1229 -2.4980 -2.5812 24 1 -0.4850 0.8400 0.0004 25 1 -1.2894 -1.7063 0.4058 26 1 -2.6126 -1.9829 2.4637 27 1 0.6999 -3.9185 4.3313 28 1 2.0219 -3.6401 2.2729 29 1 0.0437 -4.6089 -0.7824 30 1 -1.4832 -3.6922 -0.9497 31 1 -0.0108 -5.1273 -3.0119 32 1 -1.5551 -4.2471 -3.1716 33 1 0.6676 -3.4509 -4.3653 34 1 1.3856 -1.4803 -2.8699 35 1 2.0166 -3.1149 -2.4862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = 2.289869 kcal Electronic energy + Delta-G solvation = -18300.104187 eV Core-core repulsion = 15515.687353 eV Total energy + Delta-G solvation = -2784.416835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49423 -38.90268 -37.26259 -35.56456 -32.88159 -31.69745 -30.23070 -29.87043 -27.87832 -24.80516 -23.50097 -22.11695 -21.93418 -20.43897 -18.26545 -17.85822 -17.13659 -16.71915 -16.15316 -15.82609 -15.42131 -14.80109 -14.44123 -14.20151 -14.11109 -13.91135 -13.45039 -13.03544 -12.93161 -12.78610 -12.59164 -12.41440 -12.21821 -12.12550 -12.05674 -11.64560 -11.45471 -11.41131 -10.90231 -10.72001 -10.38033 -9.59924 -9.31699 -9.05358 -7.93537 -6.14844 0.62010 0.76182 1.35588 1.41162 1.47430 1.53181 2.46225 3.12272 3.25318 3.56106 4.08548 4.15300 4.20888 4.25263 4.37307 4.57124 4.66214 4.75936 4.88790 4.90752 4.99079 5.10707 5.16176 5.22413 5.24316 5.40668 5.49468 5.52246 5.60722 5.75144 5.92786 5.96500 6.17725 6.29707 6.34296 6.42777 6.66313 6.87755 7.52516 8.95242 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.008086 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.755191 B = 3461.852630 C = 4682.725529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.039 3.961 3 Si 0.934 3.066 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.520 4.520 8 H 0.047 0.953 9 C 0.083 3.917 10 H 0.027 0.973 11 C -0.034 4.034 12 C -0.067 4.067 13 C -0.138 4.138 14 C -0.062 4.062 15 Cl -0.086 7.086 16 C -0.126 4.126 17 C -0.134 4.134 18 C -0.079 4.079 19 H 0.095 0.905 20 C -0.127 4.127 21 C 0.046 3.954 22 N -0.684 5.684 23 C 0.065 3.935 24 H 0.260 0.740 25 H 0.137 0.863 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.339 0.661 34 H 0.055 0.945 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -7.234 0.895 7.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.162 4.162 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.064 3.936 10 H 0.045 0.955 11 C -0.035 4.035 12 C -0.086 4.086 13 C -0.157 4.157 14 C -0.089 4.089 15 Cl -0.058 7.058 16 C -0.144 4.144 17 C -0.152 4.152 18 C -0.099 4.099 19 H 0.113 0.887 20 C -0.165 4.165 21 C -0.083 4.083 22 N -0.313 5.313 23 C -0.064 4.064 24 H 0.070 0.930 25 H 0.155 0.845 26 H 0.143 0.857 27 H 0.157 0.843 28 H 0.144 0.856 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.073 0.927 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.525 -6.612 1.057 7.157 hybrid contribution 1.149 0.587 0.356 1.339 sum -1.375 -6.026 1.413 6.340 Atomic orbital electron populations 1.69818 1.06112 1.26356 1.49522 1.25336 0.95473 1.00786 0.94611 0.85883 0.79327 0.81503 0.77139 1.19854 1.20846 1.21685 1.21207 0.92520 0.91169 1.50858 0.93445 1.17884 0.92234 0.94669 0.88850 0.95453 1.20510 0.93564 0.92161 0.97273 1.21368 0.94095 0.95235 0.97868 1.21176 1.00692 1.00967 0.92845 1.20817 0.93623 1.06087 0.88351 1.98294 1.73544 1.96586 1.37367 1.20972 0.92570 1.01984 0.98905 1.21098 0.99867 1.01363 0.92860 1.22091 0.97387 0.97206 0.93169 0.88671 1.22501 1.00330 0.98113 0.95550 1.22603 0.99584 0.92749 0.93409 1.63013 1.29381 1.30399 1.08551 1.22720 0.93227 0.98013 0.92470 0.93040 0.84503 0.85653 0.84299 0.85566 0.92577 0.92469 0.93309 0.90533 0.84511 0.92674 0.95148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.12 7.92 21.44 0.17 -43.95 16 2 C 0.04 1.96 5.15 84.65 0.44 2.39 16 3 Si 0.93 41.34 29.54 68.60 2.03 43.37 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.52 -25.71 8.25 25.60 0.21 -25.50 16 8 H 0.05 2.39 7.81 -2.91 -0.02 2.37 16 9 C 0.08 3.66 1.72 -12.29 -0.02 3.64 16 10 H 0.03 1.18 8.05 -2.39 -0.02 1.16 16 11 C -0.03 -1.47 4.17 -19.86 -0.08 -1.55 16 12 C -0.07 -2.84 6.72 22.27 0.15 -2.70 16 13 C -0.14 -5.29 9.83 22.29 0.22 -5.07 16 14 C -0.06 -2.23 6.32 22.32 0.14 -2.09 16 15 Cl -0.09 -2.63 28.96 -2.72 -0.08 -2.71 16 16 C -0.13 -4.40 9.83 22.29 0.22 -4.18 16 17 C -0.13 -5.15 9.70 22.27 0.22 -4.93 16 18 C -0.08 -3.29 1.69 -9.59 -0.02 -3.30 16 19 H 0.10 4.58 4.70 -2.39 -0.01 4.57 16 20 C -0.13 -4.47 5.46 31.47 0.17 -4.30 16 21 C 0.05 1.38 7.52 86.45 0.65 2.03 16 22 N -0.68 -22.61 7.51 -502.18 -3.77 -26.38 16 23 C 0.06 2.50 6.55 86.65 0.57 3.06 16 24 H 0.26 12.79 8.31 -92.71 -0.77 12.02 16 25 H 0.14 6.28 5.06 -2.91 -0.01 6.27 16 26 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 27 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.06 1.93 7.81 -2.38 -0.02 1.91 16 30 H 0.06 2.03 7.76 -2.39 -0.02 2.01 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.34 9.27 8.92 -89.70 -0.80 8.47 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.03 1.13 8.02 -2.39 -0.02 1.11 16 Total: -1.00 -50.61 293.20 1.50 -49.11 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.30 Total: 23.06 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 2.86 Total: -42.49 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -3.60 Total: -70.33 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -50.61 1.50 -49.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.398 kcal (2) G-P(sol) polarization free energy of solvation -50.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds