Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47061 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99848 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38247 * 119.98417 * 269.72443 * 15 14 13 17 17 C 1.38218 * 120.01330 * 179.72345 * 16 15 14 18 18 C 1.38358 * 119.98283 * 0.55158 * 17 16 15 19 19 Cl 1.73600 * 120.00890 * 179.74601 * 18 17 16 20 20 C 1.38348 * 119.97554 * 359.72044 * 18 17 16 21 21 C 1.38218 * 119.98436 * 0.02562 * 20 18 17 22 22 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 23 23 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 25 25 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 26 26 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 27 27 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 28 28 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 29 29 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 30 30 H 1.08004 * 119.99436 * 0.02562 * 16 15 14 31 31 H 1.07998 * 120.01069 * 180.27002 * 17 16 15 32 32 H 1.07994 * 120.00748 * 180.02562 * 20 18 17 33 33 H 1.08006 * 119.99096 * 180.02562 * 21 20 18 34 34 H 1.08996 * 110.37823 * 142.92442 * 22 13 12 35 35 H 1.09002 * 110.37399 * 265.26957 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5730 -6.9493 -1.7492 16 6 1.6014 -8.0491 -0.9120 17 6 0.9037 -9.1934 -1.2500 18 6 0.1862 -9.2420 -2.4320 19 17 -0.6848 -10.6812 -2.8604 20 6 0.1628 -8.1430 -3.2721 21 6 0.8566 -6.9975 -2.9304 22 6 2.2262 -3.7028 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 1.0662 -2.3024 -2.1724 25 1 -0.4991 -2.2566 -1.2969 26 1 0.5304 -4.5559 -2.4763 27 1 -0.5847 -4.5748 -1.0833 28 1 2.6510 -5.1866 -2.2831 29 1 3.2014 -5.9670 -0.7809 30 1 2.1648 -8.0124 0.0087 31 1 0.9224 -10.0510 -0.5938 32 1 -0.3974 -8.1803 -4.1946 33 1 0.8381 -6.1393 -3.5860 34 1 2.5212 -3.9518 1.0215 35 1 3.1041 -3.4802 -0.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = 13.106936 kcal Electronic energy + Delta-G solvation = -17277.976988 eV Core-core repulsion = 14494.029217 eV Total energy + Delta-G solvation = -2783.947772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60604 -37.84796 -36.50584 -33.47868 -31.85578 -31.11786 -29.35691 -28.25997 -25.49376 -23.94213 -22.86472 -21.40137 -19.83176 -19.58802 -17.08189 -16.49060 -15.73105 -15.33326 -14.99257 -14.54171 -14.41201 -13.67858 -13.57028 -13.40691 -12.64533 -12.50278 -12.31357 -12.12719 -11.55845 -11.45997 -11.20455 -11.03829 -10.94955 -10.83853 -10.73195 -10.49882 -10.20445 -9.66298 -9.30456 -9.05648 -8.89258 -8.59295 -8.42207 -7.68171 -6.05661 -4.09084 1.11488 1.27390 2.04991 3.26855 3.35247 3.38558 3.58345 4.39387 4.69064 4.75015 4.83040 4.95839 5.24874 5.28132 5.31899 5.56111 5.61099 5.75735 5.87807 5.93186 6.10498 6.16108 6.19386 6.22444 6.44151 6.49205 6.60413 6.77478 6.79270 7.09073 7.11704 7.57581 7.62369 7.68495 7.82834 7.98247 8.38575 8.93891 9.55503 11.04309 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.054839 B = 0.003503 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.461318 B = 7990.558468 C = 8209.170876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.041 0.959 11 C -0.121 4.121 12 C 0.038 3.962 13 N -0.528 5.528 14 C 0.085 3.915 15 C -0.058 4.058 16 C -0.089 4.089 17 C -0.113 4.113 18 C -0.041 4.041 19 Cl -0.082 7.082 20 C -0.111 4.111 21 C -0.101 4.101 22 C 0.046 3.954 23 H 0.260 0.740 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -16.882 -5.413 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.059 0.941 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.252 5.252 14 C -0.043 4.043 15 C -0.058 4.058 16 C -0.108 4.108 17 C -0.131 4.131 18 C -0.068 4.068 19 Cl -0.053 7.053 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.081 4.081 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.038 -17.186 -5.053 17.943 hybrid contribution 0.596 1.272 -0.757 1.596 sum 1.634 -15.913 -5.810 17.019 Atomic orbital electron populations 1.69977 1.05908 1.26456 1.50196 1.24977 0.94838 0.99082 0.94941 0.86566 0.80147 0.83863 0.77592 1.19778 1.21075 1.20975 1.21070 0.92787 0.90293 1.51168 0.92557 1.19785 0.92635 0.90954 0.93637 0.94115 1.22780 1.01951 0.90929 1.00326 1.22949 0.94940 0.96862 0.94148 1.63672 1.11676 1.18986 1.30858 1.21201 0.94807 0.91160 0.97139 1.20030 0.96802 0.95377 0.93628 1.21011 0.98744 0.91812 0.99244 1.21018 0.97463 0.99179 0.95463 1.20883 0.99750 0.88884 0.97243 1.98353 1.75635 1.38166 1.93186 1.20988 1.00319 0.92044 0.99637 1.21112 0.96585 0.97278 0.97026 1.23203 0.96495 0.90726 0.97673 0.93046 0.93401 0.91178 0.94392 0.91976 0.93928 0.90315 0.84998 0.85209 0.85230 0.85235 0.91853 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 12.61 55.43 0.70 -24.54 16 2 C 0.06 1.74 5.37 -17.82 -0.10 1.65 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.85 8.50 -34.44 -0.29 -14.14 16 8 H 0.06 1.50 7.77 -52.48 -0.41 1.09 16 9 C 0.05 1.20 2.84 -89.49 -0.25 0.95 16 10 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 11 C -0.12 -2.75 5.91 -24.77 -0.15 -2.90 16 12 C 0.04 0.73 6.25 -2.84 -0.02 0.71 16 13 N -0.53 -9.61 5.15 -232.68 -1.20 -10.81 16 14 C 0.08 1.26 4.75 -4.97 -0.02 1.23 16 15 C -0.06 -0.77 5.11 -104.62 -0.53 -1.30 16 16 C -0.09 -1.08 9.70 -39.59 -0.38 -1.47 16 17 C -0.11 -1.28 9.83 -39.54 -0.39 -1.67 16 18 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 19 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 20 C -0.11 -1.30 9.83 -39.55 -0.39 -1.68 16 21 C -0.10 -1.27 8.74 -39.59 -0.35 -1.62 16 22 C 0.05 0.94 6.13 -2.29 -0.01 0.92 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 25 H 0.07 1.72 7.84 -51.93 -0.41 1.32 16 26 H 0.04 0.64 5.50 -51.93 -0.29 0.35 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 29 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.53 6.91 -52.48 -0.36 1.17 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -27.88 303.43 -10.36 -38.24 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.78 Total: -0.98 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.14 Total: -20.05 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.50 Total: -35.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.88 -10.36 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.346 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds