Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99938 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47061 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.47266 * 59.99848 * 3 2 1 7 7 C 1.37869 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99802 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.88002 * 303.84584 * 9 7 2 11 11 C 1.55398 * 111.05809 * 67.58770 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.64741 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38247 * 119.98417 * 269.72443 * 15 14 13 17 17 C 1.38218 * 120.01330 * 179.72345 * 16 15 14 18 18 C 1.38358 * 119.98283 * 0.55158 * 17 16 15 19 19 Cl 1.73600 * 120.00890 * 179.74601 * 18 17 16 20 20 C 1.38348 * 119.97554 * 359.72044 * 18 17 16 21 21 C 1.38218 * 119.98436 * 0.02562 * 20 18 17 22 22 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 23 23 H 0.97004 * 119.99744 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.67856 * 35.34619 * 11 9 7 25 25 H 1.08997 * 110.84583 * 272.02943 * 11 9 7 26 26 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 27 27 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 28 28 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 29 29 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 30 30 H 1.08004 * 119.99436 * 0.02562 * 16 15 14 31 31 H 1.07998 * 120.01069 * 180.27002 * 17 16 15 32 32 H 1.07994 * 120.00748 * 180.02562 * 20 18 17 33 33 H 1.08006 * 119.99096 * 180.02562 * 21 20 18 34 34 H 1.08996 * 110.37823 * 142.92442 * 22 13 12 35 35 H 1.09002 * 110.37399 * 265.26957 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.5659 -2.5513 0.8478 11 6 0.4925 -2.7071 -1.3385 12 6 0.3900 -4.2434 -1.4415 13 7 1.4553 -4.8133 -0.5965 14 6 2.3288 -5.6998 -1.3770 15 6 1.5730 -6.9493 -1.7492 16 6 1.6014 -8.0491 -0.9120 17 6 0.9037 -9.1934 -1.2500 18 6 0.1862 -9.2420 -2.4320 19 17 -0.6848 -10.6812 -2.8604 20 6 0.1628 -8.1430 -3.2721 21 6 0.8566 -6.9975 -2.9304 22 6 2.2262 -3.7028 0.0021 23 1 -0.4850 0.8401 -0.0004 24 1 1.0662 -2.3024 -2.1724 25 1 -0.4991 -2.2566 -1.2969 26 1 0.5304 -4.5559 -2.4763 27 1 -0.5847 -4.5748 -1.0833 28 1 2.6510 -5.1866 -2.2831 29 1 3.2014 -5.9670 -0.7809 30 1 2.1648 -8.0124 0.0087 31 1 0.9224 -10.0510 -0.5938 32 1 -0.3974 -8.1803 -4.1946 33 1 0.8381 -6.1393 -3.5860 34 1 2.5212 -3.9518 1.0215 35 1 3.1041 -3.4802 -0.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = -1.544127 kcal Electronic energy + Delta-G solvation = -17278.612306 eV Core-core repulsion = 14494.029217 eV Total energy + Delta-G solvation = -2784.583089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66626 -39.27513 -37.41204 -35.23315 -33.38003 -32.01739 -30.79729 -29.98586 -27.01451 -25.62171 -23.78853 -22.51991 -21.49677 -21.23638 -18.52560 -17.92907 -16.96269 -16.71154 -16.25020 -16.13763 -16.01774 -14.74497 -14.50072 -14.43145 -14.18813 -14.08184 -13.85085 -13.58624 -13.01243 -12.82864 -12.77413 -12.52497 -12.31820 -12.26156 -12.06460 -11.85370 -11.71634 -11.47395 -11.13999 -10.90120 -10.50135 -9.94943 -9.56974 -9.14402 -8.14358 -6.24631 0.17326 0.37966 1.17527 1.40440 1.42546 1.53708 2.42058 2.62624 3.17106 3.36347 3.79776 3.85858 3.99542 4.10814 4.20728 4.40096 4.42398 4.50727 4.63796 4.69340 4.72149 4.82267 4.85273 5.04969 5.05825 5.22960 5.27664 5.28797 5.33189 5.58651 5.63516 5.79139 5.86411 5.90835 6.05578 6.29860 6.36733 6.86015 7.43548 8.95441 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.054839 B = 0.003503 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.461318 B = 7990.558468 C = 8209.170876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.037 3.963 10 H 0.004 0.996 11 C -0.113 4.113 12 C 0.052 3.948 13 N -0.530 5.530 14 C 0.087 3.913 15 C -0.073 4.073 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.047 4.047 19 Cl -0.074 7.074 20 C -0.114 4.114 21 C -0.108 4.108 22 C 0.060 3.940 23 H 0.260 0.740 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.068 0.932 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -18.067 -5.959 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.018 3.982 10 H 0.022 0.978 11 C -0.152 4.152 12 C -0.076 4.076 13 N -0.254 5.254 14 C -0.041 4.041 15 C -0.074 4.074 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.074 4.074 19 Cl -0.045 7.045 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.068 4.068 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.960 -18.390 -5.603 19.324 hybrid contribution 0.283 1.559 -0.587 1.689 sum 2.243 -16.832 -6.190 18.074 Atomic orbital electron populations 1.70105 1.07359 1.27237 1.51177 1.25780 0.95640 1.02552 0.94695 0.85539 0.79197 0.79597 0.77522 1.18843 1.20735 1.20729 1.21428 0.93024 0.91596 1.50794 0.92493 1.19740 0.93123 0.92225 0.93076 0.97791 1.22574 0.99830 0.93845 0.98973 1.22783 0.95317 0.93696 0.95784 1.63631 1.11954 1.18121 1.31690 1.21248 0.94868 0.90997 0.96967 1.19959 0.97756 0.95149 0.94518 1.21185 0.98800 0.91670 0.99483 1.21247 0.96827 0.99553 0.95583 1.21063 0.99686 0.89243 0.97408 1.98358 1.75411 1.37613 1.93131 1.21175 1.00141 0.91727 1.00253 1.21215 0.96658 0.97861 0.96981 1.22954 0.95578 0.89776 0.98447 0.93060 0.94353 0.93952 0.91911 0.92261 0.93737 0.88880 0.83813 0.83357 0.83709 0.84780 0.91330 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 12.61 21.45 0.27 -53.29 16 2 C 0.01 0.68 5.37 84.65 0.45 1.13 16 3 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.53 -28.87 8.50 25.60 0.22 -28.66 16 8 H 0.06 3.02 7.77 -2.91 -0.02 3.00 16 9 C 0.04 1.88 2.84 -10.06 -0.03 1.85 16 10 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 11 C -0.11 -5.25 5.91 31.87 0.19 -5.06 16 12 C 0.05 1.92 6.25 86.65 0.54 2.46 16 13 N -0.53 -18.64 5.15 -890.07 -4.58 -23.22 16 14 C 0.09 2.38 4.75 85.56 0.41 2.79 16 15 C -0.07 -1.80 5.11 -19.86 -0.10 -1.90 16 16 C -0.09 -2.03 9.70 22.27 0.22 -1.82 16 17 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 18 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 19 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 20 C -0.11 -2.42 9.83 22.29 0.22 -2.20 16 21 C -0.11 -2.50 8.74 22.26 0.19 -2.31 16 22 C 0.06 2.41 6.13 86.78 0.53 2.94 16 23 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 24 H 0.04 1.81 8.04 -2.38 -0.02 1.79 16 25 H 0.04 2.16 7.84 -2.39 -0.02 2.14 16 26 H 0.06 2.01 5.50 -2.39 -0.01 2.00 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16 29 H 0.09 2.29 8.01 -2.39 -0.02 2.27 16 30 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.13 2.89 6.91 -2.91 -0.02 2.87 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.04 1.58 7.68 -2.39 -0.02 1.57 16 Total: -1.00 -59.67 303.43 1.91 -57.76 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.07 Total: 8.72 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.20 Total: -33.71 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -4.31 Total: -76.51 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -59.67 1.91 -57.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.219 kcal (2) G-P(sol) polarization free energy of solvation -59.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds