Wall clock time and date at job start Mon Mar 30 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47336 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47093 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.46754 * 149.99863 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00121 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.57586 * 60.15861 * 9 7 2 11 11 C 1.53120 * 109.52286 * 299.99542 * 9 7 2 12 12 C 1.53042 * 109.27821 * 182.43891 * 11 9 7 13 13 N 1.46848 * 109.52160 * 59.18425 * 12 11 9 14 14 C 1.46847 * 111.19556 * 298.25623 * 13 12 11 15 15 H 1.09004 * 109.46240 * 301.72671 * 14 13 12 16 16 C 1.50707 * 109.46110 * 181.76129 * 14 13 12 17 17 C 1.38242 * 119.98397 * 319.72381 * 16 14 13 18 18 C 1.38214 * 120.00920 * 179.72892 * 17 16 14 19 19 C 1.38351 * 119.98546 * 0.54799 * 18 17 16 20 20 Cl 1.73603 * 120.01138 * 179.70836 * 19 18 17 21 21 C 1.38350 * 119.97791 * 359.72483 * 19 18 17 22 22 C 1.38218 * 119.98176 * 0.02562 * 21 19 18 23 23 C 1.53034 * 109.52616 * 61.74332 * 14 13 12 24 24 H 0.96999 * 119.99773 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.49895 * 62.50343 * 11 9 7 26 26 H 1.08998 * 109.50437 * 302.38345 * 11 9 7 27 27 H 1.08995 * 109.46577 * 299.16647 * 12 11 9 28 28 H 1.08994 * 109.45929 * 179.19867 * 12 11 9 29 29 H 1.00901 * 111.00066 * 62.35005 * 13 12 11 30 30 H 1.08000 * 119.99393 * 359.97438 * 17 16 14 31 31 H 1.08005 * 120.00239 * 180.27497 * 18 17 16 32 32 H 1.07998 * 120.00593 * 180.02562 * 21 19 18 33 33 H 1.08004 * 119.99031 * 179.97438 * 22 21 19 34 34 H 1.08998 * 109.50577 * 180.88107 * 23 14 13 35 35 H 1.09004 * 109.53355 * 60.77790 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8764 -0.6836 0.8913 11 6 4.0237 -0.4717 -1.2491 12 6 5.5529 -0.5280 -1.2740 13 7 5.9923 -1.9291 -1.2823 14 6 5.5523 -2.6307 -0.0696 15 1 5.9487 -2.1211 0.8088 16 6 6.0598 -4.0495 -0.0982 17 6 6.0456 -4.7645 -1.2813 18 6 6.5160 -6.0638 -1.3094 19 6 6.9906 -6.6526 -0.1509 20 17 7.5747 -8.2871 -0.1838 21 6 6.9994 -5.9384 1.0340 22 6 6.5334 -4.6373 1.0598 23 6 4.0232 -2.6372 -0.0086 24 1 -0.4850 0.8401 -0.0004 25 1 3.6982 0.5683 -1.2272 26 1 3.6270 -0.9591 -2.1397 27 1 5.9492 -0.0283 -0.3902 28 1 5.9201 -0.0269 -2.1696 29 1 5.6699 -2.4043 -2.1120 30 1 5.6705 -4.3064 -2.1846 31 1 6.5090 -6.6208 -2.2347 32 1 7.3701 -6.3974 1.9386 33 1 6.5398 -4.0798 1.9847 34 1 3.6973 -3.1443 0.8995 35 1 3.6260 -3.1589 -0.8794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259983338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:08 Heat of formation + Delta-G solvation = 9.247413 kcal Electronic energy + Delta-G solvation = -17653.106186 eV Core-core repulsion = 14868.991053 eV Total energy + Delta-G solvation = -2784.115133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81422 -37.97377 -36.44417 -33.41221 -31.99165 -31.16398 -30.81129 -28.62547 -25.42387 -23.50939 -22.90341 -21.76555 -20.65111 -19.45614 -17.36855 -16.67752 -15.68893 -15.54958 -14.87476 -14.59272 -13.93787 -13.68652 -13.56998 -13.45752 -13.19813 -12.95927 -12.70856 -12.22182 -11.83334 -11.50550 -11.43706 -11.37066 -10.96546 -10.85094 -10.64999 -10.26892 -10.03494 -9.80004 -9.63478 -9.11887 -9.03626 -8.60863 -8.58656 -7.82528 -6.12890 -4.12651 1.16321 1.29988 2.08096 3.21369 3.32040 3.34631 3.63597 4.35123 4.50960 4.76261 4.85730 4.96454 5.16573 5.32856 5.36123 5.50591 5.62883 5.71644 5.80130 5.90173 5.91279 5.98527 6.16770 6.20134 6.23721 6.33002 6.56330 6.59216 6.66613 6.75839 6.81125 7.05909 7.36900 7.43866 7.62977 7.72316 8.45890 8.90752 9.49320 11.00378 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039493 B = 0.004308 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.812988 B = 6498.123018 C = 6788.964898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.017 3.983 10 H 0.027 0.973 11 C -0.158 4.158 12 C 0.054 3.946 13 N -0.678 5.678 14 C 0.117 3.883 15 H 0.087 0.913 16 C -0.050 4.050 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.044 4.044 20 Cl -0.083 7.083 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.122 4.122 24 H 0.264 0.736 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.335 0.665 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.061 0.939 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.082 -9.703 -1.149 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.002 4.002 10 H 0.045 0.955 11 C -0.197 4.197 12 C -0.076 4.076 13 N -0.307 5.307 14 C 0.007 3.993 15 H 0.105 0.895 16 C -0.050 4.050 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.071 4.071 20 Cl -0.054 7.054 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.603 -9.582 -0.900 18.333 hybrid contribution -0.689 0.708 -0.251 1.019 sum 14.915 -8.875 -1.151 17.393 Atomic orbital electron populations 1.69903 1.06320 1.26974 1.50685 1.25032 0.94694 0.99095 0.94425 0.86818 0.79834 0.83537 0.77853 1.20635 1.22532 1.19093 1.21027 0.88753 0.94440 1.51027 0.90971 1.19156 0.96764 0.91223 0.93067 0.95516 1.22689 0.94544 1.00941 1.01562 1.22074 0.94941 0.88999 1.01539 1.60921 1.62641 1.03097 1.04071 1.20672 0.94928 0.89178 0.94488 0.89515 1.20057 0.95807 0.96021 0.93154 1.20907 0.99052 0.93192 0.98301 1.20996 0.99204 0.95467 0.97078 1.20861 1.03925 0.86435 0.95856 1.98351 1.87459 1.20741 1.98877 1.20975 1.00650 0.94481 0.96682 1.20991 0.98447 0.94351 0.98436 1.22156 0.92251 0.99700 1.01985 0.92640 0.93112 0.92146 0.91509 0.91606 0.84706 0.85251 0.85228 0.85216 0.85070 0.92070 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.89 21.54 24.35 -169.99 -4.14 17.40 16 4 H -0.28 -6.58 6.89 56.52 0.39 -6.19 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 7 C -0.51 -14.08 9.15 -34.44 -0.32 -14.39 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.02 0.37 1.75 -91.65 -0.16 0.21 16 10 H 0.03 0.62 7.22 -51.93 -0.37 0.24 16 11 C -0.16 -3.19 4.81 -26.65 -0.13 -3.32 16 12 C 0.05 0.88 6.55 -3.83 -0.03 0.85 16 13 N -0.68 -10.14 6.36 -107.98 -0.69 -10.82 16 14 C 0.12 1.79 2.66 -68.87 -0.18 1.61 16 15 H 0.09 1.34 8.00 -51.93 -0.42 0.93 16 16 C -0.05 -0.68 4.95 -104.62 -0.52 -1.20 16 17 C -0.10 -1.21 9.28 -39.59 -0.37 -1.58 16 18 C -0.11 -1.28 9.83 -39.55 -0.39 -1.66 16 19 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 20 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 21 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 22 C -0.10 -1.28 9.67 -39.59 -0.38 -1.66 16 23 C -0.12 -2.27 4.56 -26.65 -0.12 -2.39 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.05 1.10 3.34 -51.93 -0.17 0.93 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.33 4.66 7.07 -39.29 -0.28 4.38 16 30 H 0.13 1.49 6.63 -52.49 -0.35 1.14 16 31 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.42 8.04 -52.48 -0.42 0.99 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -29.19 292.39 -9.04 -38.24 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.57 Total: 3.78 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -3.33 Total: -24.08 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.09 Total: -37.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.19 -9.04 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.484 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds