Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48500 * 109.47336 * 269.99996 * 3 2 1 5 5 H 1.48499 * 109.47093 * 30.00318 * 3 2 1 6 6 H 1.48501 * 109.46754 * 149.99863 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00121 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.57586 * 60.15861 * 9 7 2 11 11 C 1.53120 * 109.52286 * 299.99542 * 9 7 2 12 12 C 1.53042 * 109.27821 * 182.43891 * 11 9 7 13 13 N 1.46848 * 109.52160 * 59.18425 * 12 11 9 14 14 C 1.46847 * 111.19556 * 298.25623 * 13 12 11 15 15 H 1.09004 * 109.46240 * 301.72671 * 14 13 12 16 16 C 1.50707 * 109.46110 * 181.76129 * 14 13 12 17 17 C 1.38242 * 119.98397 * 319.72381 * 16 14 13 18 18 C 1.38214 * 120.00920 * 179.72892 * 17 16 14 19 19 C 1.38351 * 119.98546 * 0.54799 * 18 17 16 20 20 Cl 1.73603 * 120.01138 * 179.70836 * 19 18 17 21 21 C 1.38350 * 119.97791 * 359.72483 * 19 18 17 22 22 C 1.38218 * 119.98176 * 0.02562 * 21 19 18 23 23 C 1.53034 * 109.52616 * 61.74332 * 14 13 12 24 24 H 0.96999 * 119.99773 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.49895 * 62.50343 * 11 9 7 26 26 H 1.08998 * 109.50437 * 302.38345 * 11 9 7 27 27 H 1.08995 * 109.46577 * 299.16647 * 12 11 9 28 28 H 1.08994 * 109.45929 * 179.19867 * 12 11 9 29 29 H 1.00901 * 111.00066 * 62.35005 * 13 12 11 30 30 H 1.08000 * 119.99393 * 359.97438 * 17 16 14 31 31 H 1.08005 * 120.00239 * 180.27497 * 18 17 16 32 32 H 1.07998 * 120.00593 * 180.02562 * 21 19 18 33 33 H 1.08004 * 119.99031 * 179.97438 * 22 21 19 34 34 H 1.08998 * 109.50577 * 180.88107 * 23 14 13 35 35 H 1.09004 * 109.53355 * 60.77790 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8764 -0.6836 0.8913 11 6 4.0237 -0.4717 -1.2491 12 6 5.5529 -0.5280 -1.2740 13 7 5.9923 -1.9291 -1.2823 14 6 5.5523 -2.6307 -0.0696 15 1 5.9487 -2.1211 0.8088 16 6 6.0598 -4.0495 -0.0982 17 6 6.0456 -4.7645 -1.2813 18 6 6.5160 -6.0638 -1.3094 19 6 6.9906 -6.6526 -0.1509 20 17 7.5747 -8.2871 -0.1838 21 6 6.9994 -5.9384 1.0340 22 6 6.5334 -4.6373 1.0598 23 6 4.0232 -2.6372 -0.0086 24 1 -0.4850 0.8401 -0.0004 25 1 3.6982 0.5683 -1.2272 26 1 3.6270 -0.9591 -2.1397 27 1 5.9492 -0.0283 -0.3902 28 1 5.9201 -0.0269 -2.1696 29 1 5.6699 -2.4043 -2.1120 30 1 5.6705 -4.3064 -2.1846 31 1 6.5090 -6.6208 -2.2347 32 1 7.3701 -6.3974 1.9386 33 1 6.5398 -4.0798 1.9847 34 1 3.6973 -3.1443 0.8995 35 1 3.6260 -3.1589 -0.8794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -8.595457 kcal Electronic energy + Delta-G solvation = -17653.879911 eV Core-core repulsion = 14868.991053 eV Total energy + Delta-G solvation = -2784.888858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91945 -39.21474 -37.36393 -35.23582 -33.35419 -32.65304 -31.95472 -29.82246 -27.27777 -24.75584 -23.95257 -23.17823 -21.88545 -20.99269 -18.88880 -18.18485 -17.08587 -16.58257 -16.35931 -15.80682 -15.33647 -15.03059 -14.97002 -14.79313 -14.42186 -14.33071 -14.05306 -13.70902 -13.13300 -12.93400 -12.67914 -12.43845 -12.41144 -12.15855 -12.00023 -11.71774 -11.70121 -11.46315 -11.36845 -11.04499 -10.66065 -9.94530 -9.61151 -9.14543 -8.32275 -6.36678 0.20212 0.38972 1.18872 1.28698 1.34635 1.45252 2.30517 2.67799 3.03060 3.32641 3.79551 3.85422 4.00259 4.12748 4.26817 4.31349 4.39388 4.42039 4.50837 4.57525 4.72439 4.80915 4.87220 4.95690 5.05285 5.12261 5.14081 5.29153 5.31219 5.42250 5.60042 5.65610 5.71905 5.87142 6.08478 6.27735 6.47638 6.71418 7.29258 8.84732 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039493 B = 0.004308 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.812988 B = 6498.123018 C = 6788.964898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.302 1.302 6 H -0.243 1.243 7 C -0.520 4.520 8 H 0.027 0.973 9 C 0.014 3.986 10 H 0.023 0.977 11 C -0.156 4.156 12 C 0.062 3.938 13 N -0.668 5.668 14 C 0.131 3.869 15 H 0.090 0.910 16 C -0.067 4.067 17 C -0.102 4.102 18 C -0.112 4.112 19 C -0.050 4.050 20 Cl -0.074 7.074 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.114 4.114 24 H 0.265 0.735 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.343 0.657 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.049 0.951 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.955 -9.598 -1.469 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.045 0.955 9 C -0.005 4.005 10 H 0.041 0.959 11 C -0.195 4.195 12 C -0.067 4.067 13 N -0.297 5.297 14 C 0.021 3.979 15 H 0.108 0.892 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.131 4.131 19 C -0.077 4.077 20 Cl -0.045 7.045 21 C -0.129 4.129 22 C -0.126 4.126 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.068 0.932 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.507 -9.504 -1.230 20.841 hybrid contribution -1.642 0.505 -0.137 1.723 sum 16.865 -9.000 -1.367 19.165 Atomic orbital electron populations 1.70068 1.08384 1.28024 1.52851 1.25946 0.95431 1.03259 0.94176 0.85755 0.79107 0.78285 0.78723 1.19128 1.23039 1.16709 1.21397 0.91800 0.92673 1.49946 0.95478 1.19123 0.93237 0.93958 0.94135 0.95868 1.22596 0.97719 0.99478 0.99668 1.22045 0.91577 0.89993 1.03124 1.60938 1.61906 1.02618 1.04279 1.20476 0.91936 0.90676 0.94853 0.89231 1.19957 0.97414 0.95194 0.94204 1.21044 0.99061 0.93624 0.98337 1.21196 0.98731 0.95271 0.97870 1.21052 1.03595 0.86926 0.96098 1.98356 1.87293 1.20031 1.98868 1.21205 1.00145 0.94187 0.97400 1.21187 0.98053 0.94818 0.98566 1.22030 0.95218 0.97035 1.01017 0.92627 0.94289 0.92848 0.91023 0.88983 0.83836 0.84529 0.83578 0.83322 0.83774 0.93209 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.01 0.49 5.45 84.65 0.46 0.95 16 3 Si 0.95 44.38 24.35 68.60 1.67 46.05 16 4 H -0.27 -11.66 6.89 99.48 0.69 -10.98 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.24 -10.33 6.53 99.48 0.65 -9.68 16 7 C -0.52 -29.39 9.15 25.60 0.23 -29.16 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 9 C 0.01 0.63 1.75 -11.46 -0.02 0.61 16 10 H 0.02 1.04 7.22 -2.39 -0.02 1.03 16 11 C -0.16 -5.99 4.81 30.65 0.15 -5.84 16 12 C 0.06 1.82 6.55 86.33 0.57 2.39 16 13 N -0.67 -18.08 6.36 -495.55 -3.15 -21.23 16 14 C 0.13 3.76 2.66 44.19 0.12 3.87 16 15 H 0.09 2.55 8.00 -2.38 -0.02 2.53 16 16 C -0.07 -1.70 4.95 -19.86 -0.10 -1.80 16 17 C -0.10 -2.38 9.28 22.27 0.21 -2.17 16 18 C -0.11 -2.39 9.83 22.29 0.22 -2.17 16 19 C -0.05 -1.08 6.32 22.32 0.14 -0.94 16 20 Cl -0.07 -1.45 28.96 -2.72 -0.08 -1.53 16 21 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 22 C -0.11 -2.43 9.67 22.26 0.22 -2.21 16 23 C -0.11 -4.21 4.56 30.65 0.14 -4.07 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.04 1.59 3.34 -2.39 -0.01 1.59 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.34 8.61 7.07 -89.69 -0.63 7.97 16 30 H 0.14 2.89 6.63 -2.91 -0.02 2.87 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.14 2.79 8.04 -2.91 -0.02 2.77 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -64.35 292.39 1.67 -62.68 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.38 Total: 16.18 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 2.55 Total: -42.61 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.85 Total: -80.78 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -64.35 1.67 -62.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.084 kcal (2) G-P(sol) polarization free energy of solvation -64.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds