Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46932 * 299.99416 * 3 2 1 6 6 H 1.48497 * 109.47293 * 59.99774 * 3 2 1 7 7 C 1.37887 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99826 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46256 * 299.97653 * 9 7 2 11 11 C 1.53039 * 109.45942 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.28309 * 299.17726 * 11 9 7 13 13 C 1.53126 * 109.15962 * 302.34574 * 12 11 9 14 14 C 1.53032 * 109.27475 * 57.65202 * 13 12 11 15 15 H 1.08999 * 109.46830 * 60.83237 * 14 13 12 16 16 C 1.50706 * 109.45949 * 180.80487 * 14 13 12 17 17 C 1.38244 * 119.98773 * 260.00161 * 16 14 13 18 18 C 1.38217 * 120.01084 * 180.02562 * 17 16 14 19 19 C 1.38351 * 119.98541 * 0.25893 * 18 17 16 20 20 Cl 1.73604 * 120.00786 * 179.69323 * 19 18 17 21 21 C 1.38349 * 119.97465 * 359.42086 * 19 18 17 22 22 C 1.38212 * 119.98525 * 0.59771 * 21 19 18 23 23 N 1.46847 * 109.53013 * 300.81858 * 14 13 12 24 24 H 0.96996 * 119.99508 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.50067 * 179.22769 * 11 9 7 26 26 H 1.09003 * 109.53079 * 59.13840 * 11 9 7 27 27 H 1.08998 * 109.52335 * 182.43938 * 12 11 9 28 28 H 1.09001 * 109.52385 * 62.24726 * 12 11 9 29 29 H 1.08998 * 109.50150 * 297.71399 * 13 12 11 30 30 H 1.08993 * 109.50366 * 177.59427 * 13 12 11 31 31 H 1.07999 * 119.99331 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.00169 * 179.97438 * 18 17 16 33 33 H 1.08008 * 120.00633 * 180.29755 * 21 19 18 34 34 H 1.08001 * 119.99190 * 179.72131 * 22 21 19 35 35 H 1.00893 * 111.00179 * 185.83920 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6243 -2.5567 0.8905 11 6 2.2456 -3.6623 0.0005 12 6 3.1097 -3.5886 -1.2613 13 6 2.2024 -3.6218 -2.4944 14 6 1.2090 -2.4599 -2.4220 15 1 1.7542 -1.5161 -2.4104 16 6 0.3009 -2.5002 -3.6241 17 6 0.5414 -1.6662 -4.7001 18 6 -0.2915 -1.7024 -5.8025 19 6 -1.3692 -2.5696 -5.8267 20 17 -2.4203 -2.6099 -7.2078 21 6 -1.6055 -3.4087 -4.7524 22 6 -0.7721 -3.3713 -3.6504 23 7 0.4060 -2.5761 -1.1981 24 1 -0.4849 0.8401 -0.0004 25 1 1.7013 -4.6065 0.0144 26 1 2.8829 -3.5967 0.8824 27 1 3.7903 -4.4396 -1.2869 28 1 3.6836 -2.6620 -1.2562 29 1 1.6574 -4.5654 -2.5199 30 1 2.8087 -3.5266 -3.3950 31 1 1.3803 -0.9863 -4.6792 32 1 -0.1037 -1.0505 -6.6428 33 1 -2.4439 -4.0893 -4.7728 34 1 -0.9592 -4.0231 -2.8098 35 1 -0.3200 -1.8759 -1.1742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = -0.263162 kcal Electronic energy + Delta-G solvation = -18088.500130 eV Core-core repulsion = 15303.972587 eV Total energy + Delta-G solvation = -2784.527543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31329 -37.46218 -36.18332 -32.83341 -31.86199 -30.75677 -30.13970 -28.27387 -25.20483 -23.18853 -22.42723 -21.86201 -20.33860 -18.58135 -16.86753 -16.05955 -15.56181 -15.10716 -14.64141 -14.29246 -13.55777 -13.35795 -13.23716 -12.96429 -12.84710 -12.40307 -12.23499 -11.90081 -11.51679 -11.25231 -11.07587 -11.01304 -10.88971 -10.59982 -10.54930 -10.28044 -10.02978 -9.52319 -9.36092 -9.14363 -8.70154 -8.51607 -8.15415 -7.05015 -6.06229 -4.20857 1.50044 1.64007 2.32578 3.20084 3.30010 3.32794 3.99990 4.33075 5.04857 5.14987 5.16490 5.30010 5.60257 5.74228 5.77056 5.82711 5.91497 6.10505 6.13365 6.27631 6.38158 6.49150 6.52888 6.58473 6.61056 6.76108 6.88163 6.97925 7.08471 7.11035 7.18241 7.27705 7.67135 7.76407 8.17619 8.61367 8.88380 9.04565 9.49222 10.91254 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.006008 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.042594 B = 4659.186332 C = 5352.388242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.205 3.795 10 H 0.040 0.960 11 C -0.103 4.103 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.131 3.869 15 H 0.057 0.943 16 C -0.053 4.053 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.046 4.046 20 Cl -0.091 7.091 21 C -0.118 4.118 22 C -0.082 4.082 23 N -0.680 5.680 24 H 0.263 0.737 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -5.450 -9.537 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.074 0.926 9 C 0.097 3.903 10 H 0.058 0.942 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.135 4.135 14 C 0.020 3.980 15 H 0.075 0.925 16 C -0.054 4.054 17 C -0.126 4.126 18 C -0.135 4.135 19 C -0.072 4.072 20 Cl -0.062 7.062 21 C -0.136 4.136 22 C -0.101 4.101 23 N -0.315 5.315 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.975 -6.021 -9.646 11.413 hybrid contribution 0.533 2.122 -0.138 2.192 sum -0.442 -3.900 -9.784 10.542 Atomic orbital electron populations 1.69717 1.05781 1.26893 1.50876 1.25003 0.94829 0.99086 0.94669 0.86628 0.80256 0.84021 0.77692 1.19798 1.21065 1.20939 1.21874 0.93596 0.91586 1.50695 0.92599 1.19065 0.90479 0.91031 0.89709 0.94183 1.21545 0.97719 0.98800 0.96066 1.21452 0.97341 1.00419 0.95419 1.21488 0.96715 0.98212 0.97078 1.20155 0.92019 0.97869 0.87924 0.92484 1.20413 0.95682 0.93725 0.95541 1.21074 0.99503 0.99152 0.92868 1.20909 0.94437 0.98910 0.99240 1.20830 0.94958 1.01456 0.90003 1.98330 1.66415 1.98084 1.43406 1.21051 1.00596 0.99173 0.92825 1.21122 0.93501 0.98514 0.96931 1.60987 1.14885 1.54918 1.00692 0.92656 0.94000 0.93432 0.94263 0.91699 0.92532 0.93489 0.85548 0.85699 0.85594 0.84167 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 11.56 55.43 0.64 -23.39 16 2 C 0.07 1.73 5.38 -17.82 -0.10 1.63 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.54 -13.70 6.47 -34.44 -0.22 -13.92 16 8 H 0.06 1.44 6.76 -52.49 -0.35 1.08 16 9 C 0.21 4.83 3.05 -68.87 -0.21 4.62 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 11 C -0.10 -2.07 5.57 -26.65 -0.15 -2.22 16 12 C -0.11 -2.00 5.75 -26.61 -0.15 -2.15 16 13 C -0.10 -1.72 5.35 -26.65 -0.14 -1.87 16 14 C 0.13 2.60 2.38 -68.87 -0.16 2.44 16 15 H 0.06 1.30 6.85 -51.93 -0.36 0.94 16 16 C -0.05 -0.94 4.86 -104.62 -0.51 -1.45 16 17 C -0.11 -1.75 9.67 -39.59 -0.38 -2.13 16 18 C -0.12 -1.72 9.83 -39.55 -0.39 -2.10 16 19 C -0.05 -0.68 6.32 -39.50 -0.25 -0.93 16 20 Cl -0.09 -1.19 28.96 -51.86 -1.50 -2.69 16 21 C -0.12 -1.74 9.83 -39.55 -0.39 -2.13 16 22 C -0.08 -1.35 9.32 -39.59 -0.37 -1.72 16 23 N -0.68 -15.00 5.51 -102.20 -0.56 -15.56 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.28 6.73 -51.93 -0.35 0.93 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.13 1.93 8.04 -52.49 -0.42 1.51 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 34 H 0.14 2.30 7.72 -52.49 -0.41 1.90 16 35 H 0.36 8.76 6.83 -39.30 -0.27 8.49 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -25.50 296.87 -10.07 -35.57 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.67 Total: 8.02 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -3.42 Total: -21.94 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.08 Total: -38.95 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.50 -10.07 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.307 kcal (2) G-P(sol) polarization free energy of solvation -25.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds