Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46932 * 299.99416 * 3 2 1 6 6 H 1.48497 * 109.47293 * 59.99774 * 3 2 1 7 7 C 1.37887 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99826 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46256 * 299.97653 * 9 7 2 11 11 C 1.53039 * 109.45942 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.28309 * 299.17726 * 11 9 7 13 13 C 1.53126 * 109.15962 * 302.34574 * 12 11 9 14 14 C 1.53032 * 109.27475 * 57.65202 * 13 12 11 15 15 H 1.08999 * 109.46830 * 60.83237 * 14 13 12 16 16 C 1.50706 * 109.45949 * 180.80487 * 14 13 12 17 17 C 1.38244 * 119.98773 * 260.00161 * 16 14 13 18 18 C 1.38217 * 120.01084 * 180.02562 * 17 16 14 19 19 C 1.38351 * 119.98541 * 0.25893 * 18 17 16 20 20 Cl 1.73604 * 120.00786 * 179.69323 * 19 18 17 21 21 C 1.38349 * 119.97465 * 359.42086 * 19 18 17 22 22 C 1.38212 * 119.98525 * 0.59771 * 21 19 18 23 23 N 1.46847 * 109.53013 * 300.81858 * 14 13 12 24 24 H 0.96996 * 119.99508 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.50067 * 179.22769 * 11 9 7 26 26 H 1.09003 * 109.53079 * 59.13840 * 11 9 7 27 27 H 1.08998 * 109.52335 * 182.43938 * 12 11 9 28 28 H 1.09001 * 109.52385 * 62.24726 * 12 11 9 29 29 H 1.08998 * 109.50150 * 297.71399 * 13 12 11 30 30 H 1.08993 * 109.50366 * 177.59427 * 13 12 11 31 31 H 1.07999 * 119.99331 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.00169 * 179.97438 * 18 17 16 33 33 H 1.08008 * 120.00633 * 180.29755 * 21 19 18 34 34 H 1.08001 * 119.99190 * 179.72131 * 22 21 19 35 35 H 1.00893 * 111.00179 * 185.83920 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6243 -2.5567 0.8905 11 6 2.2456 -3.6623 0.0005 12 6 3.1097 -3.5886 -1.2613 13 6 2.2024 -3.6218 -2.4944 14 6 1.2090 -2.4599 -2.4220 15 1 1.7542 -1.5161 -2.4104 16 6 0.3009 -2.5002 -3.6241 17 6 0.5414 -1.6662 -4.7001 18 6 -0.2915 -1.7024 -5.8025 19 6 -1.3692 -2.5696 -5.8267 20 17 -2.4203 -2.6099 -7.2078 21 6 -1.6055 -3.4087 -4.7524 22 6 -0.7721 -3.3713 -3.6504 23 7 0.4060 -2.5761 -1.1981 24 1 -0.4849 0.8401 -0.0004 25 1 1.7013 -4.6065 0.0144 26 1 2.8829 -3.5967 0.8824 27 1 3.7903 -4.4396 -1.2869 28 1 3.6836 -2.6620 -1.2562 29 1 1.6574 -4.5654 -2.5199 30 1 2.8087 -3.5266 -3.3950 31 1 1.3803 -0.9863 -4.6792 32 1 -0.1037 -1.0505 -6.6428 33 1 -2.4439 -4.0893 -4.7728 34 1 -0.9592 -4.0231 -2.8098 35 1 -0.3200 -1.8759 -1.1742 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021903.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = -12.470115 kcal Electronic energy + Delta-G solvation = -18089.029463 eV Core-core repulsion = 15303.972587 eV Total energy + Delta-G solvation = -2785.056876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65897 -38.97061 -37.33402 -34.68828 -33.34474 -32.04435 -31.79067 -29.72510 -27.13278 -24.63258 -23.67489 -23.46584 -21.77315 -20.30531 -18.13043 -17.93134 -17.08950 -16.51533 -16.39535 -15.67159 -14.98841 -14.80164 -14.67494 -14.48223 -14.29465 -13.92938 -13.67838 -13.51649 -13.17971 -12.87491 -12.55744 -12.46658 -12.37154 -12.22421 -12.02470 -11.71139 -11.59569 -11.16145 -11.07516 -10.87745 -10.45250 -9.90861 -9.42192 -8.89624 -8.02918 -6.26021 0.25855 0.42695 1.18714 1.33652 1.38711 1.47097 2.38820 2.75232 3.12283 3.75302 3.96789 4.02855 4.11511 4.28931 4.44759 4.49903 4.53615 4.61879 4.78810 4.82682 4.95394 5.06690 5.09192 5.16901 5.31530 5.34509 5.34800 5.40140 5.46782 5.58586 5.71073 5.79939 5.85687 5.94067 6.23814 6.74728 6.96185 7.12460 7.46946 8.89535 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.006008 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.042594 B = 4659.186332 C = 5352.388242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.201 3.799 10 H 0.005 0.995 11 C -0.098 4.098 12 C -0.105 4.105 13 C -0.092 4.092 14 C 0.136 3.864 15 H 0.023 0.977 16 C -0.073 4.073 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.049 4.049 20 Cl -0.072 7.072 21 C -0.114 4.114 22 C -0.089 4.089 23 N -0.673 5.673 24 H 0.262 0.738 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -5.995 -11.198 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.581 4.581 8 H 0.068 0.932 9 C 0.092 3.908 10 H 0.023 0.977 11 C -0.136 4.136 12 C -0.142 4.142 13 C -0.130 4.130 14 C 0.025 3.975 15 H 0.041 0.959 16 C -0.074 4.074 17 C -0.135 4.135 18 C -0.131 4.131 19 C -0.075 4.075 20 Cl -0.043 7.043 21 C -0.133 4.133 22 C -0.107 4.107 23 N -0.305 5.305 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.695 -6.582 -11.312 13.106 hybrid contribution 0.398 2.272 0.333 2.331 sum -0.297 -4.310 -10.980 11.799 Atomic orbital electron populations 1.69829 1.06769 1.27253 1.51801 1.25608 0.95494 1.01741 0.94742 0.85776 0.79304 0.80804 0.77406 1.19412 1.20993 1.20973 1.22073 0.93343 0.92667 1.50003 0.93205 1.19036 0.90651 0.91934 0.89177 0.97744 1.21467 0.97239 0.97670 0.97270 1.21420 0.97382 1.00823 0.94617 1.21472 0.96346 0.97577 0.97609 1.20097 0.92369 0.97180 0.87834 0.95874 1.20287 0.96363 0.95414 0.95307 1.21164 1.00179 0.99076 0.93109 1.21126 0.93848 0.98885 0.99250 1.20973 0.95044 1.00959 0.90533 1.98340 1.65733 1.97997 1.42258 1.21242 1.00623 0.99261 0.92129 1.21088 0.93608 0.98500 0.97543 1.60984 1.14495 1.53819 1.01201 0.92872 0.92851 0.93359 0.91182 0.93470 0.91651 0.91593 0.85225 0.83479 0.83455 0.84624 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 11.56 21.45 0.25 -50.22 16 2 C 0.02 1.26 5.38 84.66 0.46 1.71 16 3 Si 0.94 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -28.12 6.47 25.60 0.17 -27.95 16 8 H 0.05 2.60 6.76 -2.91 -0.02 2.58 16 9 C 0.20 9.66 3.05 44.19 0.13 9.80 16 10 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 11 C -0.10 -3.91 5.57 30.65 0.17 -3.74 16 12 C -0.10 -3.71 5.75 30.67 0.18 -3.54 16 13 C -0.09 -3.15 5.35 30.65 0.16 -2.99 16 14 C 0.14 5.41 2.38 44.19 0.11 5.51 16 15 H 0.02 1.08 6.85 -2.39 -0.02 1.07 16 16 C -0.07 -2.56 4.86 -19.86 -0.10 -2.66 16 17 C -0.12 -3.68 9.67 22.27 0.22 -3.46 16 18 C -0.11 -3.09 9.83 22.29 0.22 -2.87 16 19 C -0.05 -1.31 6.32 22.32 0.14 -1.17 16 20 Cl -0.07 -1.68 28.96 -2.72 -0.08 -1.76 16 21 C -0.11 -3.15 9.83 22.29 0.22 -2.93 16 22 C -0.09 -2.84 9.32 22.26 0.21 -2.64 16 23 N -0.67 -30.27 5.51 -477.26 -2.63 -32.90 16 24 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.83 6.73 -2.39 -0.02 1.81 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.13 3.90 8.04 -2.91 -0.02 3.88 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.14 4.40 7.72 -2.91 -0.02 4.37 16 35 H 0.34 17.25 6.83 -89.70 -0.61 16.64 16 Total: -1.00 -54.53 296.87 2.32 -52.21 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.48 Total: 24.94 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 2.28 Total: -36.93 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.38 Total: -83.12 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -54.53 2.32 -52.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021903.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.735 kcal (2) G-P(sol) polarization free energy of solvation -54.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds