Wall clock time and date at job start Mon Mar 30 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47310 * 270.00550 * 3 2 1 5 5 H 1.48509 * 109.46795 * 30.00377 * 3 2 1 6 6 H 1.48497 * 109.47261 * 149.99923 * 3 2 1 7 7 C 1.37882 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47427 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46993 * 54.99248 * 10 9 7 12 12 N 1.46906 * 109.46958 * 294.99955 * 10 9 7 13 13 C 1.50697 * 109.47319 * 175.00005 * 10 9 7 14 14 C 1.38147 * 120.02588 * 259.72498 * 13 10 9 15 15 C 1.38462 * 120.24588 * 179.74242 * 14 13 10 16 16 C 1.38239 * 119.85697 * 0.53507 * 15 14 13 17 17 C 1.38573 * 119.84106 * 359.72000 * 16 15 14 18 18 Cl 1.73595 * 119.90884 * 180.02562 * 17 16 15 19 19 C 1.38192 * 120.02538 * 79.99492 * 13 10 9 20 20 C 1.51365 * 109.76023 * 179.71952 * 16 15 14 21 21 C 1.54349 * 105.17078 * 342.81218 * 20 16 15 22 22 C 1.51371 * 130.38966 * 180.19447 * 15 14 13 23 23 H 0.97003 * 119.99628 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47339 * 59.99605 * 9 7 2 25 25 H 1.09008 * 109.47114 * 300.00225 * 9 7 2 26 26 H 1.00896 * 111.00309 * 176.04353 * 12 10 9 27 27 H 1.00902 * 110.99923 * 300.00516 * 12 10 9 28 28 H 1.08007 * 119.87640 * 359.97438 * 14 13 10 29 29 H 1.07992 * 120.03741 * 359.97438 * 19 13 10 30 30 H 1.09000 * 110.30614 * 101.73435 * 20 16 15 31 31 H 1.09000 * 110.30074 * 223.89102 * 20 16 15 32 32 H 1.08999 * 110.82264 * 268.12828 * 21 20 16 33 33 H 1.08995 * 110.99231 * 144.65191 * 21 20 16 34 34 H 1.09003 * 110.30431 * 316.42793 * 22 15 14 35 35 H 1.08995 * 110.30690 * 78.48421 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8412 12 7 3.0082 -3.6540 -1.2558 13 6 1.4957 -4.9637 0.1233 14 6 1.4145 -5.6009 1.3463 15 6 0.7226 -6.7943 1.4664 16 6 0.1204 -7.3554 0.3558 17 6 0.2070 -6.7179 -0.8716 18 17 -0.5491 -7.4206 -2.2673 19 6 0.8940 -5.5235 -0.9876 20 6 -0.5613 -8.6503 0.7426 21 6 0.0554 -9.0408 2.1026 22 6 0.4866 -7.6739 2.6755 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.7159 -4.3731 -1.2535 27 1 2.3959 -3.7517 -2.0518 28 1 1.8893 -5.1648 2.2128 29 1 0.9599 -5.0286 -1.9452 30 1 -1.6355 -8.4965 0.8447 31 1 -0.3577 -9.4215 -0.0003 32 1 0.9182 -9.6924 1.9641 33 1 -0.6861 -9.5140 2.7461 34 1 1.4056 -7.7785 3.2523 35 1 -0.3046 -7.2565 3.2982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:21 Heat of formation + Delta-G solvation = -2.992533 kcal Electronic energy + Delta-G solvation = -17414.061589 eV Core-core repulsion = 14629.415692 eV Total energy + Delta-G solvation = -2784.645897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17114 -36.95342 -36.45409 -33.99425 -32.30028 -31.05128 -28.63919 -28.33362 -27.28382 -24.07559 -22.51233 -21.48297 -20.85284 -19.18456 -16.57528 -16.19420 -15.90090 -15.40749 -15.02985 -14.70377 -14.31044 -13.70388 -13.35789 -13.26764 -12.91683 -12.61813 -12.25719 -11.92927 -11.59276 -11.47103 -11.33442 -11.20738 -11.06190 -10.89158 -10.80176 -10.65971 -10.46121 -10.22130 -9.54507 -9.09743 -8.47403 -8.30597 -8.20786 -7.95316 -5.91373 -3.90523 1.36025 1.43161 2.27624 3.39006 3.44697 3.48713 3.76045 4.33826 4.49741 4.54682 4.87138 4.99096 5.10098 5.26157 5.35548 5.47104 5.48643 5.56649 5.61742 5.63919 5.73785 5.79512 5.95420 6.03782 6.10243 6.23747 6.37806 6.58026 6.68266 6.83758 7.02009 7.52266 7.68956 7.95496 8.08249 8.14707 8.51463 9.15579 9.71594 11.20366 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.004792 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.344898 B = 5841.252066 C = 6334.157297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.133 3.867 11 H 0.081 0.919 12 N -0.820 5.820 13 C -0.082 4.082 14 C -0.099 4.099 15 C -0.086 4.086 16 C -0.108 4.108 17 C -0.015 4.015 18 Cl -0.084 7.084 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.080 4.080 23 H 0.258 0.742 24 H 0.017 0.983 25 H 0.020 0.980 26 H 0.323 0.677 27 H 0.334 0.666 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -18.565 2.087 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.000 4.000 10 C 0.021 3.979 11 H 0.099 0.901 12 N -0.347 5.347 13 C -0.085 4.085 14 C -0.118 4.118 15 C -0.086 4.086 16 C -0.109 4.109 17 C -0.042 4.042 18 Cl -0.055 7.055 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.156 4.156 22 C -0.117 4.117 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.134 0.866 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.178 -17.744 2.164 17.877 hybrid contribution -0.182 0.022 -0.383 0.424 sum -0.003 -17.722 1.781 17.811 Atomic orbital electron populations 1.69974 1.06033 1.26390 1.51839 1.25022 0.94798 0.99198 0.95866 0.86574 0.79739 0.83531 0.77977 1.20835 1.21576 1.19954 1.21144 0.93378 0.89986 1.48834 0.91902 1.19145 0.92825 0.90651 0.97406 1.20854 0.94775 0.89743 0.92504 0.90093 1.58857 1.17802 1.54147 1.03915 1.21302 0.97206 0.97828 0.92159 1.20666 0.99420 0.93960 0.97742 1.20492 0.97640 0.95421 0.95042 1.20226 1.00785 0.98131 0.91781 1.20423 1.00828 0.95876 0.87053 1.98336 1.81026 1.84078 1.42066 1.20761 0.98361 0.93846 1.00047 1.20980 0.99623 0.93632 0.97082 1.22284 1.00742 0.96685 0.95934 1.21044 1.01944 0.93536 0.95211 0.93224 0.96465 0.96156 0.86637 0.85204 0.85633 0.85094 0.90204 0.90764 0.91019 0.90541 0.90592 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 8 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.04 0.93 4.60 -27.89 -0.13 0.81 16 10 C 0.13 2.63 2.93 -68.86 -0.20 2.43 16 11 H 0.08 1.61 8.00 -51.93 -0.42 1.19 16 12 N -0.82 -14.91 8.77 -5.65 -0.05 -14.96 16 13 C -0.08 -1.43 4.94 -104.67 -0.52 -1.94 16 14 C -0.10 -1.56 9.66 -39.53 -0.38 -1.94 16 15 C -0.09 -1.20 6.14 -104.21 -0.64 -1.84 16 16 C -0.11 -1.53 6.05 -104.17 -0.63 -2.16 16 17 C -0.02 -0.24 6.32 -39.45 -0.25 -0.48 16 18 Cl -0.08 -1.15 28.71 -51.86 -1.49 -2.64 16 19 C -0.11 -1.84 9.07 -39.59 -0.36 -2.20 16 20 C -0.08 -0.83 6.47 -26.85 -0.17 -1.00 16 21 C -0.12 -1.06 7.08 -25.32 -0.18 -1.24 16 22 C -0.08 -0.84 6.77 -26.85 -0.18 -1.02 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.32 4.94 9.06 -39.29 -0.36 4.58 16 27 H 0.33 5.87 7.35 -39.29 -0.29 5.58 16 28 H 0.13 1.82 8.03 -52.48 -0.42 1.40 16 29 H 0.13 2.12 6.67 -52.49 -0.35 1.77 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -30.51 306.27 -10.01 -40.52 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.76 Total: 5.38 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -4.04 Total: -23.39 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.69 Total: -41.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.49 Total: -2.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.51 -10.01 -40.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.527 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds