Wall clock time and date at job start Mon Mar 30 2020 06:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47310 * 270.00550 * 3 2 1 5 5 H 1.48509 * 109.46795 * 30.00377 * 3 2 1 6 6 H 1.48497 * 109.47261 * 149.99923 * 3 2 1 7 7 C 1.37882 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47427 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46993 * 54.99248 * 10 9 7 12 12 N 1.46906 * 109.46958 * 294.99955 * 10 9 7 13 13 C 1.50697 * 109.47319 * 175.00005 * 10 9 7 14 14 C 1.38147 * 120.02588 * 259.72498 * 13 10 9 15 15 C 1.38462 * 120.24588 * 179.74242 * 14 13 10 16 16 C 1.38239 * 119.85697 * 0.53507 * 15 14 13 17 17 C 1.38573 * 119.84106 * 359.72000 * 16 15 14 18 18 Cl 1.73595 * 119.90884 * 180.02562 * 17 16 15 19 19 C 1.38192 * 120.02538 * 79.99492 * 13 10 9 20 20 C 1.51365 * 109.76023 * 179.71952 * 16 15 14 21 21 C 1.54349 * 105.17078 * 342.81218 * 20 16 15 22 22 C 1.51371 * 130.38966 * 180.19447 * 15 14 13 23 23 H 0.97003 * 119.99628 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47339 * 59.99605 * 9 7 2 25 25 H 1.09008 * 109.47114 * 300.00225 * 9 7 2 26 26 H 1.00896 * 111.00309 * 176.04353 * 12 10 9 27 27 H 1.00902 * 110.99923 * 300.00516 * 12 10 9 28 28 H 1.08007 * 119.87640 * 359.97438 * 14 13 10 29 29 H 1.07992 * 120.03741 * 359.97438 * 19 13 10 30 30 H 1.09000 * 110.30614 * 101.73435 * 20 16 15 31 31 H 1.09000 * 110.30074 * 223.89102 * 20 16 15 32 32 H 1.08999 * 110.82264 * 268.12828 * 21 20 16 33 33 H 1.08995 * 110.99231 * 144.65191 * 21 20 16 34 34 H 1.09003 * 110.30431 * 316.42793 * 22 15 14 35 35 H 1.08995 * 110.30690 * 78.48421 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8412 12 7 3.0082 -3.6540 -1.2558 13 6 1.4957 -4.9637 0.1233 14 6 1.4145 -5.6009 1.3463 15 6 0.7226 -6.7943 1.4664 16 6 0.1204 -7.3554 0.3558 17 6 0.2070 -6.7179 -0.8716 18 17 -0.5491 -7.4206 -2.2673 19 6 0.8940 -5.5235 -0.9876 20 6 -0.5613 -8.6503 0.7426 21 6 0.0554 -9.0408 2.1026 22 6 0.4866 -7.6739 2.6755 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.7159 -4.3731 -1.2535 27 1 2.3959 -3.7517 -2.0518 28 1 1.8893 -5.1648 2.2128 29 1 0.9599 -5.0286 -1.9452 30 1 -1.6355 -8.4965 0.8447 31 1 -0.3577 -9.4215 -0.0003 32 1 0.9182 -9.6924 1.9641 33 1 -0.6861 -9.5140 2.7461 34 1 1.4056 -7.7785 3.2523 35 1 -0.3046 -7.2565 3.2982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:20 Heat of formation + Delta-G solvation = -20.523946 kcal Electronic energy + Delta-G solvation = -17414.821808 eV Core-core repulsion = 14629.415692 eV Total energy + Delta-G solvation = -2785.406116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29612 -38.24905 -37.59495 -35.48916 -34.23427 -32.18560 -30.25906 -29.70005 -28.41005 -25.89753 -23.63873 -23.08962 -21.75503 -20.57655 -18.53024 -17.39735 -17.22784 -16.65846 -16.35749 -16.19864 -15.91029 -15.13873 -14.55123 -14.40923 -14.22623 -14.06160 -13.73007 -13.20348 -12.89879 -12.86125 -12.75070 -12.57564 -12.35793 -12.29834 -12.12543 -11.97617 -11.83997 -11.77267 -11.27084 -11.21461 -10.52474 -9.64733 -9.59068 -9.30670 -8.12512 -6.19278 0.15579 0.23418 1.11269 1.42730 1.44155 1.55077 2.45599 2.56204 3.20801 3.35800 3.56386 3.84737 3.90804 4.07067 4.17579 4.22968 4.29420 4.41057 4.57276 4.70403 4.84754 4.88783 4.92844 4.93942 5.09769 5.11761 5.23734 5.35080 5.41194 5.44127 5.48982 5.68819 5.82605 5.85637 6.26986 6.46088 6.76797 6.94977 7.47646 8.99452 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.004792 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.344898 B = 5841.252066 C = 6334.157297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.046 3.954 10 C 0.149 3.851 11 H 0.079 0.921 12 N -0.827 5.827 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.088 4.088 16 C -0.110 4.110 17 C -0.027 4.027 18 Cl -0.072 7.072 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.110 4.110 22 C -0.081 4.081 23 H 0.260 0.740 24 H -0.012 1.012 25 H -0.009 1.009 26 H 0.341 0.659 27 H 0.337 0.663 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -20.109 2.918 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.202 4.202 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.009 3.991 10 C 0.037 3.963 11 H 0.097 0.903 12 N -0.356 5.356 13 C -0.104 4.104 14 C -0.129 4.129 15 C -0.089 4.089 16 C -0.111 4.111 17 C -0.054 4.054 18 Cl -0.043 7.043 19 C -0.142 4.142 20 C -0.115 4.115 21 C -0.147 4.147 22 C -0.118 4.118 23 H 0.068 0.932 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.731 -19.310 2.993 19.554 hybrid contribution -0.393 0.425 -0.659 0.877 sum 0.338 -18.885 2.334 19.032 Atomic orbital electron populations 1.70111 1.07718 1.27336 1.53007 1.25916 0.95640 1.03091 0.95524 0.85486 0.78677 0.78892 0.78168 1.20296 1.21152 1.18795 1.21496 0.93518 0.91289 1.48175 0.91918 1.18932 0.93178 0.92489 0.94534 1.20363 0.93665 0.89153 0.93130 0.90341 1.58748 1.18198 1.55295 1.03361 1.20990 0.98621 0.97338 0.93424 1.20826 0.99941 0.94860 0.97247 1.20943 0.96265 0.94847 0.96796 1.20748 0.99992 0.99252 0.91142 1.20541 1.00891 0.95730 0.88204 1.98333 1.80725 1.83730 1.41538 1.20749 0.99148 0.94690 0.99650 1.21122 0.99804 0.91993 0.98556 1.22317 1.01683 0.95891 0.94778 1.21182 1.03062 0.93605 0.93916 0.93171 0.99340 0.99052 0.84562 0.84959 0.84963 0.85692 0.89496 0.89849 0.89983 0.88022 0.89046 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.30 13.29 21.45 0.28 -58.02 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.51 -28.96 8.84 25.60 0.23 -28.74 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.05 2.43 4.60 29.85 0.14 2.57 16 10 C 0.15 6.05 2.93 44.17 0.13 6.18 16 11 H 0.08 3.18 8.00 -2.39 -0.02 3.16 16 12 N -0.83 -30.47 8.77 -171.80 -1.51 -31.98 16 13 C -0.10 -3.58 4.94 -19.90 -0.10 -3.68 16 14 C -0.11 -3.44 9.66 22.30 0.22 -3.23 16 15 C -0.09 -2.34 6.14 -19.60 -0.12 -2.46 16 16 C -0.11 -2.94 6.05 -19.57 -0.12 -3.06 16 17 C -0.03 -0.82 6.32 22.36 0.14 -0.68 16 18 Cl -0.07 -1.93 28.71 -2.72 -0.08 -2.01 16 19 C -0.12 -4.17 9.07 22.27 0.20 -3.97 16 20 C -0.08 -1.47 6.47 30.52 0.20 -1.27 16 21 C -0.11 -1.53 7.08 31.51 0.22 -1.31 16 22 C -0.08 -1.45 6.77 30.52 0.21 -1.24 16 23 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 26 H 0.34 10.37 9.06 -89.70 -0.81 9.56 16 27 H 0.34 12.15 7.35 -89.69 -0.66 11.49 16 28 H 0.13 3.82 8.03 -2.91 -0.02 3.80 16 29 H 0.13 4.23 6.67 -2.91 -0.02 4.21 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.50 306.27 2.17 -64.33 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.36 Total: 20.81 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 1.80 Total: -40.74 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -1.22 Total: -89.99 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -66.50 2.17 -64.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.804 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds