Wall clock time and date at job start Mon Mar 30 2020 07:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32569 * 1 3 3 C 1.50696 * 120.00291 * 2 1 4 4 C 1.47821 * 119.99949 * 179.97438 * 2 1 3 5 5 C 1.39532 * 120.13679 * 244.98048 * 4 2 1 6 6 C 1.38071 * 119.84254 * 180.02562 * 5 4 2 7 7 Cl 1.73596 * 119.94209 * 179.97438 * 6 5 4 8 8 C 1.38485 * 120.11380 * 359.73400 * 6 5 4 9 9 C 1.38298 * 120.27232 * 0.54043 * 8 6 5 10 10 C 1.50695 * 119.92162 * 179.72961 * 9 8 6 11 11 H 1.09000 * 109.47521 * 199.72802 * 10 9 8 12 12 N 1.46908 * 109.47079 * 319.72837 * 10 9 8 13 13 C 1.52996 * 109.47310 * 79.72571 * 10 9 8 14 14 C 1.50702 * 109.47159 * 174.99934 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.37998 * 120.15622 * 359.45378 * 9 8 6 23 23 H 1.07999 * 119.99603 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.99758 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46587 * 269.99780 * 3 2 1 26 26 H 1.08996 * 109.47083 * 29.99352 * 3 2 1 27 27 H 1.08994 * 109.47686 * 149.99729 * 3 2 1 28 28 H 1.08000 * 120.07663 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.85835 * 180.29210 * 8 6 5 30 30 H 1.00902 * 111.00072 * 59.99841 * 12 10 9 31 31 H 1.00901 * 110.99845 * 183.95568 * 12 10 9 32 32 H 1.09004 * 109.47066 * 55.00137 * 13 10 9 33 33 H 1.08994 * 109.47405 * 294.99967 * 13 10 9 34 34 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.05865 * 180.29250 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3050 0.0000 4 6 2.0648 -1.2802 0.0006 5 6 2.8570 -1.6312 1.0942 6 6 3.5452 -2.8282 1.0881 7 17 4.5321 -3.2672 2.4471 8 6 3.4455 -3.6814 0.0019 9 6 2.6661 -3.3357 -1.0870 10 6 2.5681 -4.2673 -2.2674 11 1 2.2249 -3.7126 -3.1407 12 7 3.8890 -4.8478 -2.5441 13 6 1.5748 -5.3874 -1.9520 14 6 1.3839 -6.2484 -3.1741 15 1 1.9180 -6.0198 -4.0845 16 6 0.5322 -7.3317 -3.1280 17 7 0.3697 -8.0863 -4.1928 18 14 -0.3911 -7.7275 -1.5530 19 1 -1.6952 -7.0171 -1.5519 20 1 -0.6250 -9.1917 -1.4711 21 1 0.4128 -7.2884 -0.3842 22 6 1.9734 -2.1421 -1.0927 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 2.2609 1.6196 -1.0277 26 1 1.4902 2.0647 0.5137 27 1 3.0316 1.1748 0.5138 28 1 2.9318 -0.9682 1.9434 29 1 3.9818 -4.6188 0.0035 30 1 4.2293 -5.3676 -1.7490 31 1 3.8639 -5.4262 -3.3704 32 1 0.6184 -4.9534 -1.6603 33 1 1.9616 -5.9967 -1.1352 34 1 -0.2298 -8.8481 -4.1604 35 1 1.3615 -1.8759 -1.9419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:46 Heat of formation + Delta-G solvation = 15.619635 kcal Electronic energy + Delta-G solvation = -17273.846345 eV Core-core repulsion = 14490.007532 eV Total energy + Delta-G solvation = -2783.838813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.58053 -36.54971 -36.30658 -34.43259 -32.45758 -30.41046 -29.66800 -28.62716 -27.29973 -24.67851 -23.00415 -21.94085 -20.28491 -18.38096 -17.22816 -16.48473 -15.71708 -15.29344 -14.84351 -14.48917 -14.15415 -13.99959 -13.53303 -13.26386 -13.12734 -12.96317 -12.47799 -12.21837 -12.10565 -11.79826 -11.52226 -11.38131 -11.25069 -10.94524 -10.80714 -10.59133 -10.22184 -9.84630 -9.35988 -9.32428 -8.67963 -8.56502 -8.42931 -7.88189 -6.16906 -4.17066 1.22826 1.38707 2.06920 2.28142 3.22799 3.31170 3.34725 3.75950 4.34660 4.55305 4.88461 5.01089 5.13450 5.18987 5.30942 5.35571 5.47140 5.51596 5.56112 5.68427 5.80121 5.82548 5.93562 6.19444 6.27407 6.38597 6.44511 6.48329 6.67596 6.77425 6.93717 6.98345 7.17334 7.61627 7.84629 8.13284 8.36771 8.85247 9.45101 10.95606 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.005695 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.937210 B = 4915.138549 C = 5598.924430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.043 4.043 5 C -0.115 4.115 6 C -0.031 4.031 7 Cl -0.081 7.081 8 C -0.099 4.099 9 C -0.037 4.037 10 C 0.136 3.864 11 H 0.086 0.914 12 N -0.838 5.838 13 C -0.038 4.038 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.101 4.101 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.329 0.671 31 H 0.354 0.646 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 14.963 10.722 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.088 4.088 3 C -0.171 4.171 4 C -0.044 4.044 5 C -0.134 4.134 6 C -0.057 4.057 7 Cl -0.052 7.052 8 C -0.118 4.118 9 C -0.038 4.038 10 C 0.024 3.976 11 H 0.104 0.896 12 N -0.368 5.368 13 C -0.076 4.076 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.119 4.119 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.373 15.510 10.669 19.326 hybrid contribution -1.067 -1.419 1.071 2.073 sum 3.306 14.091 11.740 18.637 Atomic orbital electron populations 1.24163 0.94602 1.02243 1.00555 1.20430 0.94431 0.92984 1.00987 1.20833 1.00124 0.93708 1.02403 1.18759 0.97417 0.94215 0.93961 1.20890 0.97828 0.95742 0.98902 1.20746 0.98167 0.96569 0.90211 1.98347 1.69313 1.93004 1.44566 1.20896 0.99573 0.99521 0.91812 1.20085 0.93865 0.94413 0.95432 1.20353 0.89899 0.93893 0.93457 0.89631 1.59248 1.25007 1.42923 1.09590 1.20319 0.95123 0.94163 0.98037 1.21014 1.27156 1.10779 0.97472 0.90676 1.24984 0.96228 0.95774 0.96035 1.69902 1.37453 1.17473 1.28701 0.86822 0.80696 0.77519 0.84521 1.20209 1.21282 1.19080 1.21250 0.99446 0.93198 0.98017 0.87999 0.87842 0.91135 0.91685 0.91693 0.85459 0.85132 0.85977 0.83191 0.96558 0.96423 0.92571 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 13.95 28.83 0.40 -1.50 16 2 C -0.09 -1.01 5.44 -102.61 -0.56 -1.56 16 3 C -0.11 -1.03 10.02 36.00 0.36 -0.67 16 4 C -0.04 -0.59 5.31 -105.02 -0.56 -1.15 16 5 C -0.11 -1.55 9.47 -39.16 -0.37 -1.92 16 6 C -0.03 -0.45 6.31 -39.55 -0.25 -0.70 16 7 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.57 16 8 C -0.10 -1.59 9.07 -39.47 -0.36 -1.95 16 9 C -0.04 -0.63 4.95 -104.69 -0.52 -1.15 16 10 C 0.14 2.58 2.99 -68.86 -0.21 2.37 16 11 H 0.09 1.67 8.00 -51.93 -0.42 1.26 16 12 N -0.84 -15.04 9.02 -5.65 -0.05 -15.09 16 13 C -0.04 -0.85 3.67 -27.88 -0.10 -0.95 16 14 C -0.53 -14.07 9.10 -34.44 -0.31 -14.39 16 15 H 0.08 2.13 7.39 -52.49 -0.39 1.74 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 18 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C -0.10 -1.55 9.33 -39.19 -0.37 -1.91 16 23 H 0.10 1.16 8.05 -52.49 -0.42 0.74 16 24 H 0.10 0.88 8.05 -52.49 -0.42 0.46 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 27 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.13 2.04 6.66 -52.49 -0.35 1.69 16 30 H 0.33 5.56 7.34 -39.29 -0.29 5.27 16 31 H 0.35 6.69 7.90 -39.29 -0.31 6.37 16 32 H 0.02 0.37 7.58 -51.93 -0.39 -0.02 16 33 H 0.02 0.41 7.19 -51.93 -0.37 0.03 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.13 1.87 8.03 -52.49 -0.42 1.45 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -28.67 312.02 -8.31 -36.98 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.63 Total: 8.80 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.93 Total: -23.55 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.72 Total: -41.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.67 -8.31 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.602 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds