Wall clock time and date at job start Mon Mar 30 2020 07:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32569 * 1 3 3 C 1.50696 * 120.00291 * 2 1 4 4 C 1.47821 * 119.99949 * 179.97438 * 2 1 3 5 5 C 1.39532 * 120.13679 * 244.98048 * 4 2 1 6 6 C 1.38071 * 119.84254 * 180.02562 * 5 4 2 7 7 Cl 1.73596 * 119.94209 * 179.97438 * 6 5 4 8 8 C 1.38485 * 120.11380 * 359.73400 * 6 5 4 9 9 C 1.38298 * 120.27232 * 0.54043 * 8 6 5 10 10 C 1.50695 * 119.92162 * 179.72961 * 9 8 6 11 11 H 1.09000 * 109.47521 * 199.72802 * 10 9 8 12 12 N 1.46908 * 109.47079 * 319.72837 * 10 9 8 13 13 C 1.52996 * 109.47310 * 79.72571 * 10 9 8 14 14 C 1.50702 * 109.47159 * 174.99934 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.37998 * 120.15622 * 359.45378 * 9 8 6 23 23 H 1.07999 * 119.99603 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.99758 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46587 * 269.99780 * 3 2 1 26 26 H 1.08996 * 109.47083 * 29.99352 * 3 2 1 27 27 H 1.08994 * 109.47686 * 149.99729 * 3 2 1 28 28 H 1.08000 * 120.07663 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.85835 * 180.29210 * 8 6 5 30 30 H 1.00902 * 111.00072 * 59.99841 * 12 10 9 31 31 H 1.00901 * 110.99845 * 183.95568 * 12 10 9 32 32 H 1.09004 * 109.47066 * 55.00137 * 13 10 9 33 33 H 1.08994 * 109.47405 * 294.99967 * 13 10 9 34 34 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.05865 * 180.29250 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0792 1.3050 0.0000 4 6 2.0648 -1.2802 0.0006 5 6 2.8570 -1.6312 1.0942 6 6 3.5452 -2.8282 1.0881 7 17 4.5321 -3.2672 2.4471 8 6 3.4455 -3.6814 0.0019 9 6 2.6661 -3.3357 -1.0870 10 6 2.5681 -4.2673 -2.2674 11 1 2.2249 -3.7126 -3.1407 12 7 3.8890 -4.8478 -2.5441 13 6 1.5748 -5.3874 -1.9520 14 6 1.3839 -6.2484 -3.1741 15 1 1.9180 -6.0198 -4.0845 16 6 0.5322 -7.3317 -3.1280 17 7 0.3697 -8.0863 -4.1928 18 14 -0.3911 -7.7275 -1.5530 19 1 -1.6952 -7.0171 -1.5519 20 1 -0.6250 -9.1917 -1.4711 21 1 0.4128 -7.2884 -0.3842 22 6 1.9734 -2.1421 -1.0927 23 1 -0.5399 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 2.2609 1.6196 -1.0277 26 1 1.4902 2.0647 0.5137 27 1 3.0316 1.1748 0.5138 28 1 2.9318 -0.9682 1.9434 29 1 3.9818 -4.6188 0.0035 30 1 4.2293 -5.3676 -1.7490 31 1 3.8639 -5.4262 -3.3704 32 1 0.6184 -4.9534 -1.6603 33 1 1.9616 -5.9967 -1.1352 34 1 -0.2298 -8.8481 -4.1604 35 1 1.3615 -1.8759 -1.9419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:45 Heat of formation + Delta-G solvation = -0.438890 kcal Electronic energy + Delta-G solvation = -17274.542695 eV Core-core repulsion = 14490.007532 eV Total energy + Delta-G solvation = -2784.535163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75739 -37.77019 -37.49032 -35.62895 -34.43901 -31.61774 -30.85261 -30.42490 -28.04344 -26.29268 -24.18827 -23.42790 -21.70935 -19.58423 -18.99424 -17.80324 -17.00313 -16.47716 -16.35164 -15.96950 -15.36100 -15.20474 -14.88540 -14.83939 -14.18328 -14.12302 -13.94427 -13.78306 -13.27346 -13.00204 -12.90356 -12.55366 -12.41370 -12.37943 -12.19389 -12.01236 -11.79750 -11.67354 -11.29506 -10.82543 -10.25880 -9.80575 -9.51201 -9.37022 -8.33445 -6.37159 0.10665 0.22115 1.05729 1.29899 1.31437 1.32716 1.42578 2.30290 2.58927 3.01689 3.55770 3.67545 3.93384 4.12392 4.18424 4.24160 4.34096 4.35449 4.64422 4.71183 4.74264 4.78070 4.88401 5.02828 5.07786 5.16227 5.18370 5.23982 5.32936 5.53760 5.55626 5.69870 5.79160 5.88896 6.18713 6.31696 6.63848 6.70185 7.28006 8.82132 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.005695 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.937210 B = 4915.138549 C = 5598.924430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.111 4.111 4 C -0.038 4.038 5 C -0.109 4.109 6 C -0.035 4.035 7 Cl -0.068 7.068 8 C -0.111 4.111 9 C -0.054 4.054 10 C 0.145 3.855 11 H 0.075 0.925 12 N -0.831 5.831 13 C -0.031 4.031 14 C -0.524 4.524 15 H 0.046 0.954 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.939 3.061 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.254 1.254 22 C -0.110 4.110 23 H 0.090 0.910 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.336 0.664 31 H 0.346 0.654 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 16.824 12.991 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C -0.168 4.168 4 C -0.039 4.039 5 C -0.127 4.127 6 C -0.061 4.061 7 Cl -0.039 7.039 8 C -0.130 4.130 9 C -0.055 4.055 10 C 0.033 3.967 11 H 0.093 0.907 12 N -0.360 5.360 13 C -0.070 4.070 14 C -0.562 4.562 15 H 0.064 0.936 16 C -0.183 4.183 17 N -0.583 5.583 18 Si 0.763 3.237 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.178 1.178 22 C -0.129 4.129 23 H 0.108 0.892 24 H 0.146 0.854 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.180 17.389 12.954 22.083 hybrid contribution -0.961 -1.935 0.349 2.189 sum 3.218 15.453 13.304 20.643 Atomic orbital electron populations 1.24325 0.94447 1.02910 0.99268 1.20567 0.94732 0.92834 1.02090 1.20854 1.00188 0.92801 1.02926 1.19017 0.96927 0.94780 0.93143 1.21192 0.96738 0.95438 0.99367 1.20819 0.98357 0.96677 0.90252 1.98351 1.68914 1.92979 1.43634 1.20910 0.99862 0.99979 0.92240 1.19849 0.95745 0.94938 0.94994 1.20122 0.89175 0.93141 0.94236 0.90716 1.59234 1.24402 1.42787 1.09553 1.20233 0.96105 0.94722 0.95895 1.21300 1.25952 1.10995 0.97952 0.93572 1.25823 0.97458 0.95893 0.99158 1.70036 1.38873 1.18429 1.30998 0.85831 0.79604 0.77366 0.80870 1.19497 1.20998 1.17822 1.21361 0.99439 0.93156 0.98921 0.89195 0.85390 0.90848 0.89743 0.91594 0.83182 0.85289 0.85183 0.84049 0.96754 0.96491 0.92496 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 13.95 66.67 0.93 -2.28 16 2 C -0.10 -2.05 5.44 -18.48 -0.10 -2.15 16 3 C -0.11 -1.66 10.02 71.23 0.71 -0.95 16 4 C -0.04 -0.97 5.31 -20.12 -0.11 -1.08 16 5 C -0.11 -2.67 9.47 22.54 0.21 -2.45 16 6 C -0.03 -0.94 6.31 22.29 0.14 -0.80 16 7 Cl -0.07 -1.64 28.95 -2.72 -0.08 -1.72 16 8 C -0.11 -3.44 9.07 22.34 0.20 -3.23 16 9 C -0.05 -1.81 4.95 -19.91 -0.10 -1.91 16 10 C 0.15 5.56 2.99 44.16 0.13 5.69 16 11 H 0.07 2.99 8.00 -2.39 -0.02 2.97 16 12 N -0.83 -30.07 9.02 -171.80 -1.55 -31.62 16 13 C -0.03 -1.38 3.67 29.85 0.11 -1.27 16 14 C -0.52 -28.57 9.10 25.60 0.23 -28.34 16 15 H 0.05 2.72 7.39 -2.91 -0.02 2.70 16 16 C 0.01 0.83 5.47 84.66 0.46 1.29 16 17 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 18 Si 0.94 43.95 27.47 68.60 1.88 45.84 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 22 C -0.11 -3.28 9.33 22.52 0.21 -3.07 16 23 H 0.09 1.88 8.05 -2.91 -0.02 1.86 16 24 H 0.13 1.73 8.05 -2.91 -0.02 1.71 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 0.93 8.07 -2.39 -0.02 0.92 16 27 H 0.07 0.97 8.03 -2.39 -0.02 0.95 16 28 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.13 3.93 6.66 -2.91 -0.02 3.91 16 30 H 0.34 11.33 7.34 -89.69 -0.66 10.67 16 31 H 0.35 13.44 7.90 -89.69 -0.71 12.73 16 32 H 0.01 0.65 7.58 -2.38 -0.02 0.63 16 33 H 0.02 0.77 7.19 -2.39 -0.02 0.75 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.13 3.73 8.03 -2.91 -0.02 3.71 16 Total: -1.00 -61.18 312.02 3.28 -57.91 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.32 Total: 27.34 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 3.04 Total: -40.55 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.25 Total: -88.81 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -61.18 3.28 -57.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.467 kcal (2) G-P(sol) polarization free energy of solvation -61.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds