Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00403 * 2 1 4 4 H 1.48504 * 109.47079 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47446 * 119.99882 * 3 2 1 6 6 H 1.48498 * 109.47486 * 240.00166 * 3 2 1 7 7 C 1.37885 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99438 * 186.45303 * 7 2 1 9 9 C 1.50692 * 120.00012 * 6.45055 * 7 2 1 10 10 H 1.08998 * 109.50296 * 34.52641 * 9 7 2 11 11 C 1.53118 * 109.50753 * 274.40433 * 9 7 2 12 12 C 1.53112 * 109.16252 * 182.40369 * 11 9 7 13 13 C 1.53037 * 109.27907 * 57.65773 * 12 11 9 14 14 H 1.09005 * 109.46463 * 60.83534 * 13 12 11 15 15 C 1.50692 * 109.46510 * 180.80118 * 13 12 11 16 16 C 1.38242 * 119.98554 * 79.77951 * 15 13 12 17 17 C 1.38222 * 120.01428 * 179.72761 * 16 15 13 18 18 C 1.38355 * 119.98406 * 0.54329 * 17 16 15 19 19 Cl 1.73597 * 120.01357 * 179.74765 * 18 17 16 20 20 C 1.38356 * 119.97262 * 359.73033 * 18 17 16 21 21 C 1.38216 * 119.98854 * 359.97438 * 20 18 17 22 22 N 1.46843 * 109.52340 * 300.81981 * 13 12 11 23 23 C 1.46847 * 111.19983 * 61.74089 * 22 13 12 24 24 H 0.96994 * 119.99817 * 175.06471 * 1 2 3 25 25 H 1.08998 * 109.52470 * 302.31495 * 11 9 7 26 26 H 1.09000 * 109.51882 * 62.49692 * 11 9 7 27 27 H 1.08998 * 109.50653 * 297.71228 * 12 11 9 28 28 H 1.09005 * 109.50359 * 177.59264 * 12 11 9 29 29 H 1.07999 * 119.99247 * 0.02562 * 16 15 13 30 30 H 1.07995 * 120.00971 * 180.27282 * 17 16 15 31 31 H 1.08001 * 120.00828 * 179.97438 * 20 18 17 32 32 H 1.07995 * 119.99435 * 179.97438 * 21 20 18 33 33 H 1.00896 * 111.00228 * 185.83910 * 22 13 12 34 34 H 1.09000 * 109.46470 * 178.24910 * 23 22 13 35 35 H 1.08998 * 109.46518 * 58.27554 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0794 -1.1970 0.1057 9 6 1.2581 -2.4951 -0.1455 10 1 0.4038 -2.3522 -0.8072 11 6 0.7692 -2.9611 1.2286 12 6 0.0646 -4.3123 1.0798 13 6 1.0313 -5.3199 0.4534 14 1 1.8981 -5.4436 1.1027 15 6 0.3358 -6.6463 0.2868 16 6 -0.5193 -6.8488 -0.7803 17 6 -1.1532 -8.0670 -0.9369 18 6 -0.9405 -9.0802 -0.0190 19 17 -1.7413 -10.6083 -0.2112 20 6 -0.0889 -8.8750 1.0520 21 6 0.5491 -7.6584 1.2040 22 7 1.4695 -4.8289 -0.8593 23 6 2.1903 -3.5554 -0.7364 24 1 -0.4849 -0.8369 -0.0723 25 1 1.6201 -3.0661 1.9017 26 1 0.0710 -2.2289 1.6343 27 1 -0.8088 -4.1985 0.4378 28 1 -0.2482 -4.6697 2.0609 29 1 -0.6884 -6.0565 -1.4946 30 1 -1.8178 -8.2266 -1.7730 31 1 0.0772 -9.6653 1.7690 32 1 1.2135 -7.4980 2.0402 33 1 2.0325 -5.5187 -1.3339 34 1 2.5288 -3.2331 -1.7211 35 1 3.0516 -3.6873 -0.0815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = -2.735280 kcal Electronic energy + Delta-G solvation = -17480.659060 eV Core-core repulsion = 14696.024318 eV Total energy + Delta-G solvation = -2784.634742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72761 -37.73712 -36.46440 -33.67997 -31.53985 -31.09839 -30.86467 -28.50956 -24.66964 -23.24187 -22.66220 -22.29950 -20.69854 -18.90366 -17.30626 -16.94064 -15.71999 -15.57515 -14.67215 -13.99697 -13.83155 -13.72228 -13.69541 -13.47723 -13.22265 -12.62640 -12.35772 -12.24018 -11.75471 -11.46943 -11.41240 -11.33205 -10.88068 -10.79719 -10.32971 -10.28464 -10.09366 -9.62945 -9.39561 -9.06753 -8.57924 -8.52155 -8.22991 -7.93514 -6.35498 -4.05686 1.09712 1.26934 2.03313 3.43226 3.44839 3.59671 3.63601 4.46475 4.58413 4.80138 4.84480 4.91122 5.34334 5.35071 5.38843 5.56519 5.57608 5.72271 5.92910 5.97153 6.11627 6.18610 6.20424 6.30493 6.39186 6.47630 6.61662 6.69282 6.79666 6.90965 7.00932 7.39287 7.52146 7.68414 7.88382 8.28098 8.44944 8.89355 9.66904 11.04439 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.057788 B = 0.003628 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.414239 B = 7716.139938 C = 7764.518328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.598 4.598 8 H 0.046 0.954 9 C 0.037 3.963 10 H 0.038 0.962 11 C -0.110 4.110 12 C -0.107 4.107 13 C 0.131 3.869 14 H 0.040 0.960 15 C -0.068 4.068 16 C -0.079 4.079 17 C -0.115 4.115 18 C -0.041 4.041 19 Cl -0.082 7.082 20 C -0.115 4.115 21 C -0.106 4.106 22 N -0.685 5.685 23 C 0.074 3.926 24 H 0.271 0.729 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.328 0.672 34 H 0.065 0.935 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -17.304 0.537 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.183 4.183 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.636 4.636 8 H 0.064 0.936 9 C 0.018 3.982 10 H 0.056 0.944 11 C -0.148 4.148 12 C -0.145 4.145 13 C 0.021 3.979 14 H 0.058 0.942 15 C -0.068 4.068 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.067 4.067 19 Cl -0.054 7.054 20 C -0.133 4.133 21 C -0.125 4.125 22 N -0.316 5.316 23 C -0.054 4.054 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.408 -15.471 0.444 15.541 hybrid contribution 1.033 -2.211 0.382 2.470 sum -0.375 -17.682 0.826 17.705 Atomic orbital electron populations 1.70785 1.06810 1.31274 1.45757 1.25775 0.96520 1.02462 0.93551 0.83588 0.74943 0.75569 0.76458 1.20832 1.21595 1.21472 1.21905 0.94640 0.91768 1.55324 0.93551 1.18855 0.95170 0.92435 0.91743 0.94376 1.21803 0.98635 0.93402 1.00942 1.21710 0.98162 0.95950 0.98710 1.20377 0.96244 0.90131 0.91172 0.94173 1.20185 0.96836 0.95233 0.94577 1.21145 0.94564 0.96325 0.97739 1.21112 1.00799 0.92543 0.98887 1.20917 0.99490 0.87758 0.98583 1.98352 1.79130 1.30549 1.97345 1.20944 0.97077 0.98081 0.97225 1.21029 0.99920 0.92228 0.99343 1.60443 1.46100 1.06231 1.18783 1.22098 0.95103 0.88310 0.99911 0.91695 0.94034 0.92437 0.91736 0.93156 0.83891 0.85153 0.85296 0.85377 0.85535 0.91635 0.96588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.95 13.63 55.43 0.76 -26.19 16 2 C 0.02 0.61 5.45 -17.82 -0.10 0.51 16 3 Si 1.07 24.79 29.91 -169.99 -5.08 19.70 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.60 -16.30 8.31 -34.44 -0.29 -16.59 16 8 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 9 C 0.04 0.89 1.89 -91.69 -0.17 0.72 16 10 H 0.04 1.02 6.95 -51.93 -0.36 0.66 16 11 C -0.11 -2.42 5.19 -26.61 -0.14 -2.55 16 12 C -0.11 -1.94 5.35 -26.65 -0.14 -2.08 16 13 C 0.13 2.08 2.63 -68.88 -0.18 1.90 16 14 H 0.04 0.64 8.00 -51.93 -0.42 0.23 16 15 C -0.07 -0.93 4.86 -104.62 -0.51 -1.44 16 16 C -0.08 -1.05 9.32 -39.59 -0.37 -1.42 16 17 C -0.11 -1.37 9.83 -39.54 -0.39 -1.76 16 18 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 19 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 20 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 21 C -0.11 -1.28 9.67 -39.59 -0.38 -1.67 16 22 N -0.69 -11.57 5.75 -107.99 -0.62 -12.20 16 23 C 0.07 1.50 5.81 -3.83 -0.02 1.48 16 24 H 0.27 8.00 6.32 -40.82 -0.26 7.74 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.14 1.97 7.72 -52.49 -0.41 1.57 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.35 8.04 -52.49 -0.42 0.92 16 33 H 0.33 4.84 8.78 -39.29 -0.35 4.49 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 302.23 15.07 4.55 4.55 Total: -1.00 -28.46 302.23 -10.00 -38.46 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.77 Total: 3.36 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.33 Total: -25.31 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.13 Total: -38.39 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.46 -10.00 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.724 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds