Wall clock time and date at job start Mon Mar 30 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00403 * 2 1 4 4 H 1.48504 * 109.47079 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47446 * 119.99882 * 3 2 1 6 6 H 1.48498 * 109.47486 * 240.00166 * 3 2 1 7 7 C 1.37885 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99438 * 186.45303 * 7 2 1 9 9 C 1.50692 * 120.00012 * 6.45055 * 7 2 1 10 10 H 1.08998 * 109.50296 * 34.52641 * 9 7 2 11 11 C 1.53118 * 109.50753 * 274.40433 * 9 7 2 12 12 C 1.53112 * 109.16252 * 182.40369 * 11 9 7 13 13 C 1.53037 * 109.27907 * 57.65773 * 12 11 9 14 14 H 1.09005 * 109.46463 * 60.83534 * 13 12 11 15 15 C 1.50692 * 109.46510 * 180.80118 * 13 12 11 16 16 C 1.38242 * 119.98554 * 79.77951 * 15 13 12 17 17 C 1.38222 * 120.01428 * 179.72761 * 16 15 13 18 18 C 1.38355 * 119.98406 * 0.54329 * 17 16 15 19 19 Cl 1.73597 * 120.01357 * 179.74765 * 18 17 16 20 20 C 1.38356 * 119.97262 * 359.73033 * 18 17 16 21 21 C 1.38216 * 119.98854 * 359.97438 * 20 18 17 22 22 N 1.46843 * 109.52340 * 300.81981 * 13 12 11 23 23 C 1.46847 * 111.19983 * 61.74089 * 22 13 12 24 24 H 0.96994 * 119.99817 * 175.06471 * 1 2 3 25 25 H 1.08998 * 109.52470 * 302.31495 * 11 9 7 26 26 H 1.09000 * 109.51882 * 62.49692 * 11 9 7 27 27 H 1.08998 * 109.50653 * 297.71228 * 12 11 9 28 28 H 1.09005 * 109.50359 * 177.59264 * 12 11 9 29 29 H 1.07999 * 119.99247 * 0.02562 * 16 15 13 30 30 H 1.07995 * 120.00971 * 180.27282 * 17 16 15 31 31 H 1.08001 * 120.00828 * 179.97438 * 20 18 17 32 32 H 1.07995 * 119.99435 * 179.97438 * 21 20 18 33 33 H 1.00896 * 111.00228 * 185.83910 * 22 13 12 34 34 H 1.09000 * 109.46470 * 178.24910 * 23 22 13 35 35 H 1.08998 * 109.46518 * 58.27554 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0794 -1.1970 0.1057 9 6 1.2581 -2.4951 -0.1455 10 1 0.4038 -2.3522 -0.8072 11 6 0.7692 -2.9611 1.2286 12 6 0.0646 -4.3123 1.0798 13 6 1.0313 -5.3199 0.4534 14 1 1.8981 -5.4436 1.1027 15 6 0.3358 -6.6463 0.2868 16 6 -0.5193 -6.8488 -0.7803 17 6 -1.1532 -8.0670 -0.9369 18 6 -0.9405 -9.0802 -0.0190 19 17 -1.7413 -10.6083 -0.2112 20 6 -0.0889 -8.8750 1.0520 21 6 0.5491 -7.6584 1.2040 22 7 1.4695 -4.8289 -0.8593 23 6 2.1903 -3.5554 -0.7364 24 1 -0.4849 -0.8369 -0.0723 25 1 1.6201 -3.0661 1.9017 26 1 0.0710 -2.2289 1.6343 27 1 -0.8088 -4.1985 0.4378 28 1 -0.2482 -4.6697 2.0609 29 1 -0.6884 -6.0565 -1.4946 30 1 -1.8178 -8.2266 -1.7730 31 1 0.0772 -9.6653 1.7690 32 1 1.2135 -7.4980 2.0402 33 1 2.0325 -5.5187 -1.3339 34 1 2.5288 -3.2331 -1.7211 35 1 3.0516 -3.6873 -0.0815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:38 Heat of formation + Delta-G solvation = -18.098321 kcal Electronic energy + Delta-G solvation = -17481.325251 eV Core-core repulsion = 14696.024318 eV Total energy + Delta-G solvation = -2785.300933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84006 -39.12087 -37.40916 -35.50516 -32.92567 -32.61345 -31.99685 -29.96369 -26.47490 -24.72844 -23.85451 -23.72090 -22.01300 -20.54818 -19.00058 -18.19550 -17.04989 -16.64908 -16.01114 -15.64722 -15.50905 -15.16405 -14.86028 -14.52902 -14.39448 -14.13133 -13.96834 -13.62893 -13.48971 -12.89574 -12.63635 -12.50483 -12.40677 -11.98572 -11.89267 -11.80616 -11.74183 -11.45312 -11.16475 -10.60743 -10.28604 -9.98738 -9.56731 -9.36150 -8.58432 -6.28578 0.12867 0.34790 1.14524 1.54186 1.61727 1.80682 2.58823 2.63048 3.19674 3.25372 3.71197 3.87061 3.98012 4.10167 4.19331 4.27580 4.42324 4.50083 4.51883 4.67454 4.73573 4.76262 4.83988 4.96972 5.04665 5.15928 5.18517 5.24426 5.28257 5.51803 5.60036 5.75256 5.83094 5.95483 6.24788 6.28251 6.55551 6.70795 7.52106 8.81652 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.057788 B = 0.003628 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.414239 B = 7716.139938 C = 7764.518328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.031 4.031 3 Si 1.112 2.888 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.609 4.609 8 H 0.044 0.956 9 C 0.032 3.968 10 H 0.003 0.997 11 C -0.101 4.101 12 C -0.099 4.099 13 C 0.138 3.862 14 H 0.048 0.952 15 C -0.079 4.079 16 C -0.088 4.088 17 C -0.116 4.116 18 C -0.044 4.044 19 Cl -0.072 7.072 20 C -0.111 4.111 21 C -0.103 4.103 22 N -0.684 5.684 23 C 0.087 3.913 24 H 0.258 0.742 25 H 0.041 0.959 26 H 0.024 0.976 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.346 0.654 34 H 0.060 0.940 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -19.163 1.014 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.229 4.229 3 Si 0.934 3.066 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.648 4.648 8 H 0.063 0.937 9 C 0.013 3.987 10 H 0.022 0.978 11 C -0.139 4.139 12 C -0.137 4.137 13 C 0.028 3.972 14 H 0.066 0.934 15 C -0.080 4.080 16 C -0.106 4.106 17 C -0.135 4.135 18 C -0.071 4.071 19 Cl -0.043 7.043 20 C -0.130 4.130 21 C -0.122 4.122 22 N -0.315 5.315 23 C -0.042 4.042 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.520 -17.372 0.915 17.404 hybrid contribution 0.724 -1.737 0.227 1.896 sum 0.204 -19.110 1.142 19.145 Atomic orbital electron populations 1.70902 1.07823 1.30541 1.48213 1.27180 0.96588 1.06234 0.92906 0.82999 0.74159 0.71664 0.77787 1.21261 1.19799 1.19600 1.22313 0.94756 0.93367 1.54323 0.93745 1.18815 0.94472 0.92953 0.92436 0.97829 1.21589 0.98098 0.94987 0.99261 1.21597 0.97830 0.94353 0.99920 1.20260 0.95976 0.90606 0.90353 0.93447 1.19955 0.97698 0.94543 0.95806 1.21077 0.95142 0.96688 0.97723 1.21227 1.00728 0.92093 0.99447 1.21076 0.99384 0.88092 0.98547 1.98361 1.78913 1.29738 1.97313 1.21205 0.96185 0.98310 0.97271 1.21202 0.99898 0.91861 0.99207 1.60286 1.45878 1.05502 1.19883 1.21754 0.94250 0.88971 0.99242 0.93102 0.94043 0.95730 0.93049 0.91086 0.85087 0.83866 0.83011 0.83574 0.83557 0.92138 0.96363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 13.63 21.45 0.29 -57.07 16 2 C -0.03 -1.75 5.45 84.66 0.46 -1.29 16 3 Si 1.11 50.07 29.91 68.60 2.05 52.12 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.61 -33.83 8.31 25.60 0.21 -33.62 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 9 C 0.03 1.61 1.89 -11.49 -0.02 1.58 16 10 H 0.00 0.20 6.95 -2.39 -0.02 0.18 16 11 C -0.10 -4.56 5.19 30.67 0.16 -4.40 16 12 C -0.10 -3.55 5.35 30.64 0.16 -3.39 16 13 C 0.14 4.19 2.63 44.19 0.12 4.30 16 14 H 0.05 1.41 8.00 -2.38 -0.02 1.39 16 15 C -0.08 -2.02 4.86 -19.86 -0.10 -2.12 16 16 C -0.09 -2.21 9.32 22.27 0.21 -2.00 16 17 C -0.12 -2.55 9.83 22.29 0.22 -2.33 16 18 C -0.04 -0.92 6.32 22.33 0.14 -0.78 16 19 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.43 16 20 C -0.11 -2.14 9.83 22.29 0.22 -1.92 16 21 C -0.10 -2.17 9.67 22.27 0.22 -1.95 16 22 N -0.68 -22.54 5.75 -495.57 -2.85 -25.39 16 23 C 0.09 3.52 5.81 86.33 0.50 4.02 16 24 H 0.26 16.04 6.32 -92.71 -0.59 15.45 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.02 1.23 7.73 -2.39 -0.02 1.21 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.13 3.58 7.72 -2.91 -0.02 3.56 16 30 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.15 2.52 8.04 -2.91 -0.02 2.50 16 33 H 0.35 9.63 8.78 -89.70 -0.79 8.84 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -62.23 302.23 2.39 -59.84 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.48 Total: 15.83 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 2.50 Total: -43.90 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.56 Total: -82.46 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -62.23 2.39 -59.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.742 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds