Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48509 * 109.46886 * 240.00069 * 3 2 1 5 5 H 1.48500 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46978 * 120.00486 * 3 2 1 7 7 C 1.37877 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00303 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50099 * 300.08102 * 9 7 2 11 11 C 1.53118 * 109.50631 * 180.02562 * 9 7 2 12 12 C 1.53121 * 109.15994 * 297.67649 * 11 9 7 13 13 C 1.53035 * 109.27642 * 302.34330 * 12 11 9 14 14 H 1.08999 * 109.46622 * 299.17796 * 13 12 11 15 15 C 1.50696 * 109.46303 * 179.19447 * 13 12 11 16 16 C 1.38246 * 119.98635 * 100.00165 * 15 13 12 17 17 C 1.38216 * 120.01497 * 180.02562 * 16 15 13 18 18 C 1.38357 * 119.98603 * 359.97165 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38218 * 119.98918 * 359.46843 * 20 18 17 22 22 N 1.46848 * 109.52413 * 59.17944 * 13 12 11 23 23 C 1.46847 * 111.19855 * 298.25718 * 22 13 12 24 24 H 0.96997 * 119.99483 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52404 * 177.76654 * 11 9 7 26 26 H 1.08999 * 109.51880 * 57.58089 * 11 9 7 27 27 H 1.08998 * 109.50350 * 182.40549 * 12 11 9 28 28 H 1.09001 * 109.50485 * 62.28299 * 12 11 9 29 29 H 1.08003 * 119.99321 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.00776 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00645 * 179.69150 * 20 18 17 32 32 H 1.07996 * 119.99376 * 180.26107 * 21 20 18 33 33 H 1.00900 * 111.00027 * 62.35314 * 22 13 12 34 34 H 1.08997 * 109.46041 * 301.72514 * 23 22 13 35 35 H 1.09002 * 109.45221 * 181.75299 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6234 -2.5570 0.8888 11 6 2.2453 -3.6636 -0.0005 12 6 3.0825 -3.6095 -1.2814 13 6 2.1524 -3.6619 -2.4955 14 1 1.5887 -4.5947 -2.4814 15 6 2.9710 -3.5890 -3.7587 16 6 3.2562 -4.7428 -4.4648 17 6 4.0073 -4.6767 -5.6231 18 6 4.4734 -3.4553 -6.0763 19 17 5.4164 -3.3714 -7.5314 20 6 4.1921 -2.3016 -5.3664 21 6 3.4365 -2.3684 -4.2110 22 7 1.2213 -2.5272 -2.4497 23 6 0.3739 -2.5837 -1.2518 24 1 -0.4849 0.8401 0.0004 25 1 1.7012 -4.6072 0.0395 26 1 2.9006 -3.5829 0.8667 27 1 3.7631 -4.4605 -1.3075 28 1 3.6564 -2.6830 -1.3023 29 1 2.8926 -5.6962 -4.1108 30 1 4.2304 -5.5782 -6.1744 31 1 4.5598 -1.3486 -5.7169 32 1 3.2133 -1.4673 -3.6590 33 1 1.7174 -1.6501 -2.5007 34 1 -0.1812 -3.5217 -1.2436 35 1 -0.3256 -1.7478 -1.2622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = 1.800888 kcal Electronic energy + Delta-G solvation = -17943.564931 eV Core-core repulsion = 15159.126892 eV Total energy + Delta-G solvation = -2784.438039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58498 -37.69165 -36.31913 -33.18072 -31.32182 -31.02419 -30.49114 -28.26904 -25.00300 -23.41277 -22.52769 -22.03954 -20.41131 -19.04655 -17.11138 -16.11544 -15.39220 -15.26262 -14.68057 -14.27435 -13.85491 -13.50788 -13.39578 -13.29661 -12.96420 -12.49611 -12.24103 -11.89397 -11.42485 -11.20843 -11.10236 -10.98357 -10.88184 -10.76128 -10.65333 -10.31092 -10.23619 -9.90017 -9.21038 -8.90761 -8.88498 -8.48533 -8.36232 -7.21746 -6.07430 -4.14372 1.31918 1.45188 2.19448 3.25013 3.31831 3.33544 3.80285 4.35839 4.87060 4.99550 5.03407 5.21768 5.39550 5.50261 5.60824 5.71264 5.78719 5.93907 6.03433 6.12191 6.25464 6.34288 6.39925 6.48198 6.63710 6.70892 6.79854 6.95146 6.97906 7.03143 7.23025 7.59561 7.62219 7.96139 8.14364 8.41014 8.48890 8.90716 9.50844 10.97816 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.005447 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.588791 B = 5139.308457 C = 5879.299737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.010 3.990 10 H 0.028 0.972 11 C -0.107 4.107 12 C -0.133 4.133 13 C 0.123 3.877 14 H 0.076 0.924 15 C -0.047 4.047 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.046 4.046 19 Cl -0.087 7.087 20 C -0.110 4.110 21 C -0.092 4.092 22 N -0.672 5.672 23 C 0.064 3.936 24 H 0.262 0.738 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.345 0.655 34 H 0.027 0.973 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -7.353 -9.630 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.010 4.010 10 H 0.046 0.954 11 C -0.145 4.145 12 C -0.172 4.172 13 C 0.013 3.987 14 H 0.094 0.906 15 C -0.048 4.048 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.072 4.072 19 Cl -0.058 7.058 20 C -0.128 4.128 21 C -0.110 4.110 22 N -0.303 5.303 23 C -0.066 4.066 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.045 0.955 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.179 -7.506 -10.162 14.064 hybrid contribution 1.266 1.210 0.644 1.866 sum 7.445 -6.296 -9.518 13.626 Atomic orbital electron populations 1.69830 1.05829 1.26705 1.49982 1.24959 0.94794 0.98912 0.95051 0.86746 0.79686 0.83484 0.78636 1.20205 1.21271 1.20439 1.21078 0.92658 0.90343 1.51101 0.92853 1.19347 0.93608 0.92299 0.95745 0.95413 1.21579 0.98458 0.98592 0.95878 1.22124 0.98058 1.01241 0.95778 1.20466 0.91832 0.96927 0.89506 0.90602 1.20174 0.95684 0.92799 0.96144 1.20964 0.98697 0.98511 0.94492 1.20927 0.98935 0.96130 0.97147 1.20840 1.00346 0.95538 0.90506 1.98341 1.71829 1.98769 1.36846 1.21031 0.99228 0.97169 0.95412 1.21064 0.96083 0.98540 0.95351 1.61077 1.23400 1.04628 1.41172 1.22050 0.95874 1.00342 0.88289 0.92783 0.94680 0.93397 0.93968 0.91202 0.85388 0.85462 0.85314 0.84717 0.83503 0.95469 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 11.33 55.43 0.63 -23.25 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -12.96 6.84 -34.44 -0.24 -13.20 16 8 H 0.05 1.35 6.86 -52.49 -0.36 0.99 16 9 C 0.01 0.23 2.59 -91.69 -0.24 -0.01 16 10 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.11 -2.14 5.46 -26.61 -0.15 -2.28 16 12 C -0.13 -2.40 5.08 -26.65 -0.14 -2.53 16 13 C 0.12 2.15 2.66 -68.88 -0.18 1.96 16 14 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 15 C -0.05 -0.74 4.95 -104.62 -0.52 -1.26 16 16 C -0.11 -1.45 9.67 -39.59 -0.38 -1.83 16 17 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16 18 C -0.05 -0.61 6.32 -39.50 -0.25 -0.86 16 19 Cl -0.09 -1.03 28.96 -51.86 -1.50 -2.53 16 20 C -0.11 -1.52 9.83 -39.55 -0.39 -1.91 16 21 C -0.09 -1.42 9.28 -39.59 -0.37 -1.79 16 22 N -0.67 -13.56 6.31 -107.99 -0.68 -14.24 16 23 C 0.06 1.43 5.85 -3.83 -0.02 1.40 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.37 6.82 -51.93 -0.35 1.01 16 29 H 0.13 1.46 8.04 -52.48 -0.42 1.04 16 30 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.14 2.18 6.62 -52.49 -0.35 1.83 16 33 H 0.34 7.36 6.11 -39.29 -0.24 7.12 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 2.64 6.07 -51.93 -0.32 2.33 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -25.63 294.80 -10.03 -35.66 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.55 Total: 7.17 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -3.35 Total: -22.51 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.05 Total: -37.50 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.63 -10.03 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.460 kcal (2) G-P(sol) polarization free energy of solvation -25.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds