Wall clock time and date at job start Mon Mar 30 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48509 * 109.46886 * 240.00069 * 3 2 1 5 5 H 1.48500 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46978 * 120.00486 * 3 2 1 7 7 C 1.37877 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00303 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50099 * 300.08102 * 9 7 2 11 11 C 1.53118 * 109.50631 * 180.02562 * 9 7 2 12 12 C 1.53121 * 109.15994 * 297.67649 * 11 9 7 13 13 C 1.53035 * 109.27642 * 302.34330 * 12 11 9 14 14 H 1.08999 * 109.46622 * 299.17796 * 13 12 11 15 15 C 1.50696 * 109.46303 * 179.19447 * 13 12 11 16 16 C 1.38246 * 119.98635 * 100.00165 * 15 13 12 17 17 C 1.38216 * 120.01497 * 180.02562 * 16 15 13 18 18 C 1.38357 * 119.98603 * 359.97165 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38218 * 119.98918 * 359.46843 * 20 18 17 22 22 N 1.46848 * 109.52413 * 59.17944 * 13 12 11 23 23 C 1.46847 * 111.19855 * 298.25718 * 22 13 12 24 24 H 0.96997 * 119.99483 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52404 * 177.76654 * 11 9 7 26 26 H 1.08999 * 109.51880 * 57.58089 * 11 9 7 27 27 H 1.08998 * 109.50350 * 182.40549 * 12 11 9 28 28 H 1.09001 * 109.50485 * 62.28299 * 12 11 9 29 29 H 1.08003 * 119.99321 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.00776 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00645 * 179.69150 * 20 18 17 32 32 H 1.07996 * 119.99376 * 180.26107 * 21 20 18 33 33 H 1.00900 * 111.00027 * 62.35314 * 22 13 12 34 34 H 1.08997 * 109.46041 * 301.72514 * 23 22 13 35 35 H 1.09002 * 109.45221 * 181.75299 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6234 -2.5570 0.8888 11 6 2.2453 -3.6636 -0.0005 12 6 3.0825 -3.6095 -1.2814 13 6 2.1524 -3.6619 -2.4955 14 1 1.5887 -4.5947 -2.4814 15 6 2.9710 -3.5890 -3.7587 16 6 3.2562 -4.7428 -4.4648 17 6 4.0073 -4.6767 -5.6231 18 6 4.4734 -3.4553 -6.0763 19 17 5.4164 -3.3714 -7.5314 20 6 4.1921 -2.3016 -5.3664 21 6 3.4365 -2.3684 -4.2110 22 7 1.2213 -2.5272 -2.4497 23 6 0.3739 -2.5837 -1.2518 24 1 -0.4849 0.8401 0.0004 25 1 1.7012 -4.6072 0.0395 26 1 2.9006 -3.5829 0.8667 27 1 3.7631 -4.4605 -1.3075 28 1 3.6564 -2.6830 -1.3023 29 1 2.8926 -5.6962 -4.1108 30 1 4.2304 -5.5782 -6.1744 31 1 4.5598 -1.3486 -5.7169 32 1 3.2133 -1.4673 -3.6590 33 1 1.7174 -1.6501 -2.5007 34 1 -0.1812 -3.5217 -1.2436 35 1 -0.3256 -1.7478 -1.2622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:40 Heat of formation + Delta-G solvation = -10.876852 kcal Electronic energy + Delta-G solvation = -17944.114679 eV Core-core repulsion = 15159.126892 eV Total energy + Delta-G solvation = -2784.987787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82265 -39.11885 -37.35401 -34.93194 -32.92198 -32.29064 -31.84721 -29.73414 -26.88912 -24.79113 -23.79041 -23.48453 -21.73160 -20.75849 -18.23932 -17.99663 -16.79043 -16.55445 -16.29263 -15.61021 -15.40666 -14.91660 -14.76473 -14.55206 -14.33140 -14.07792 -13.57867 -13.37233 -12.95740 -12.80483 -12.61275 -12.45355 -12.39220 -12.24729 -11.88333 -11.81427 -11.78197 -11.60124 -10.98973 -10.78877 -10.39855 -9.93248 -9.53086 -8.83883 -8.07146 -6.19412 0.23031 0.40266 1.19077 1.41325 1.43451 1.49383 2.43281 2.71103 3.20521 3.64801 3.88808 3.95659 4.01734 4.25493 4.33672 4.46726 4.49088 4.60621 4.77505 4.79793 4.83712 4.93154 5.07001 5.08350 5.26226 5.30325 5.35211 5.39640 5.44016 5.61625 5.67070 5.80119 5.89475 6.05270 6.32284 6.60203 6.74806 6.94627 7.48271 8.96699 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.005447 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.588791 B = 5139.308457 C = 5879.299737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.516 4.516 8 H 0.049 0.951 9 C 0.006 3.994 10 H -0.008 1.008 11 C -0.103 4.103 12 C -0.124 4.124 13 C 0.128 3.872 14 H 0.086 0.914 15 C -0.064 4.064 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.049 4.049 19 Cl -0.073 7.073 20 C -0.114 4.114 21 C -0.107 4.107 22 N -0.672 5.672 23 C 0.074 3.926 24 H 0.260 0.740 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.336 0.664 34 H 0.037 0.963 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 -8.721 -11.119 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.068 0.932 9 C -0.014 4.014 10 H 0.010 0.990 11 C -0.141 4.141 12 C -0.163 4.163 13 C 0.017 3.983 14 H 0.104 0.896 15 C -0.064 4.064 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.076 4.076 19 Cl -0.045 7.045 20 C -0.133 4.133 21 C -0.126 4.126 22 N -0.301 5.301 23 C -0.056 4.056 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.055 0.945 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.661 -8.886 -11.658 16.540 hybrid contribution 0.838 1.592 1.064 2.090 sum 8.499 -7.294 -10.594 15.417 Atomic orbital electron populations 1.69969 1.06991 1.27049 1.51030 1.25585 0.95402 1.01698 0.95023 0.85878 0.78547 0.80105 0.78730 1.19279 1.21451 1.20445 1.21277 0.92507 0.91318 1.50358 0.93245 1.19338 0.94060 0.93310 0.94696 0.98960 1.21501 0.97902 0.97725 0.96966 1.22027 0.98024 1.01376 0.94921 1.20472 0.91468 0.95893 0.90425 0.89556 1.20041 0.96608 0.93776 0.95999 1.21193 0.98102 0.98606 0.94231 1.21234 0.97778 0.96825 0.96748 1.20997 1.00120 0.95639 0.90805 1.98349 1.71410 1.98762 1.35946 1.21128 0.99002 0.98175 0.95002 1.20995 0.97243 0.98144 0.96183 1.61029 1.24224 1.05302 1.39570 1.21768 0.95651 0.99355 0.88780 0.93097 0.92926 0.93827 0.91258 0.93153 0.82996 0.82778 0.84287 0.86407 0.84480 0.94476 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.58 11.33 21.45 0.24 -50.33 16 2 C 0.02 1.18 5.30 84.65 0.45 1.63 16 3 Si 0.94 42.13 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.52 -26.53 6.84 25.60 0.18 -26.36 16 8 H 0.05 2.53 6.86 -2.91 -0.02 2.51 16 9 C 0.01 0.28 2.59 -11.49 -0.03 0.25 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.10 -4.03 5.46 30.67 0.17 -3.87 16 12 C -0.12 -4.30 5.08 30.65 0.16 -4.15 16 13 C 0.13 4.25 2.66 44.19 0.12 4.36 16 14 H 0.09 2.70 8.00 -2.39 -0.02 2.68 16 15 C -0.06 -1.86 4.95 -19.86 -0.10 -1.96 16 16 C -0.10 -2.41 9.67 22.27 0.22 -2.20 16 17 C -0.11 -2.32 9.83 22.29 0.22 -2.10 16 18 C -0.05 -1.17 6.32 22.32 0.14 -1.03 16 19 Cl -0.07 -1.56 28.96 -2.72 -0.08 -1.63 16 20 C -0.11 -3.00 9.83 22.29 0.22 -2.78 16 21 C -0.11 -3.22 9.28 22.27 0.21 -3.01 16 22 N -0.67 -27.11 6.31 -495.57 -3.13 -30.23 16 23 C 0.07 3.39 5.85 86.33 0.51 3.90 16 24 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.94 6.82 -2.39 -0.02 1.92 16 29 H 0.15 2.80 8.04 -2.91 -0.02 2.78 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.12 3.88 6.62 -2.91 -0.02 3.86 16 33 H 0.34 14.62 6.11 -89.69 -0.55 14.07 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 Total: -1.00 -55.10 294.80 2.05 -53.05 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.55 Total: 22.30 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 2.44 Total: -37.31 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.88 Total: -80.57 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.63 kcal Total: -55.10 2.05 -53.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.170 kcal (2) G-P(sol) polarization free energy of solvation -55.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds