Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48509 * 109.47307 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47128 * 239.99881 * 3 2 1 6 6 H 1.48500 * 109.47320 * 119.99938 * 3 2 1 7 7 C 1.37878 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 342.49620 * 7 2 1 9 9 C 1.50704 * 119.99699 * 162.50090 * 7 2 1 10 10 H 1.08999 * 109.49981 * 54.38388 * 9 7 2 11 11 C 1.53113 * 109.50022 * 174.46227 * 9 7 2 12 12 C 1.53119 * 109.16302 * 62.28801 * 11 9 7 13 13 C 1.53031 * 109.27992 * 57.64833 * 12 11 9 14 14 H 1.09004 * 109.45984 * 60.84176 * 13 12 11 15 15 C 1.50698 * 109.46213 * 180.80343 * 13 12 11 16 16 C 1.38242 * 119.98469 * 79.73534 * 15 13 12 17 17 C 1.38214 * 120.01485 * 179.72502 * 16 15 13 18 18 C 1.38355 * 119.98727 * 0.54199 * 17 16 15 19 19 Cl 1.73589 * 120.01668 * 179.74805 * 18 17 16 20 20 C 1.38350 * 119.96780 * 359.72934 * 18 17 16 21 21 C 1.38215 * 119.99129 * 359.97438 * 20 18 17 22 22 N 1.46847 * 109.52871 * 300.82624 * 13 12 11 23 23 C 1.46841 * 111.19716 * 61.73626 * 22 13 12 24 24 H 0.97000 * 120.00352 * 174.66897 * 1 2 3 25 25 H 1.09002 * 109.52192 * 182.19353 * 11 9 7 26 26 H 1.09002 * 109.52555 * 302.31782 * 11 9 7 27 27 H 1.09002 * 109.50712 * 177.59887 * 12 11 9 28 28 H 1.09002 * 109.50306 * 297.70900 * 12 11 9 29 29 H 1.08003 * 119.99302 * 359.97438 * 16 15 13 30 30 H 1.07997 * 120.00922 * 180.27045 * 17 16 15 31 31 H 1.08007 * 120.00615 * 179.97438 * 20 18 17 32 32 H 1.08007 * 119.99279 * 180.02562 * 21 20 18 33 33 H 1.00897 * 110.99343 * 297.64543 * 22 13 12 34 34 H 1.08997 * 109.46557 * 178.24806 * 23 22 13 35 35 H 1.08997 * 109.46540 * 58.27687 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.5020 -2.1076 0.2823 9 6 3.4592 -1.2244 -0.3919 10 1 4.0160 -0.5145 0.2197 11 6 4.0177 -2.6336 -0.1756 12 6 3.2697 -3.6153 -1.0819 13 6 3.4140 -3.1686 -2.5384 14 1 4.4684 -3.1665 -2.8149 15 6 2.6627 -4.1211 -3.4325 16 6 1.2911 -4.0086 -3.5643 17 6 0.6022 -4.8783 -4.3885 18 6 1.2840 -5.8687 -5.0730 19 17 0.4186 -6.9654 -6.1033 20 6 2.6558 -5.9842 -4.9363 21 6 3.3445 -5.1101 -4.1165 22 7 2.8648 -1.8155 -2.6936 23 6 3.5980 -0.8471 -1.8685 24 1 -0.4851 -0.8364 -0.0780 25 1 5.0793 -2.6465 -0.4223 26 1 3.8824 -2.9231 0.8666 27 1 3.6915 -4.6134 -0.9638 28 1 2.2146 -3.6310 -0.8089 29 1 0.7584 -3.2385 -3.0262 30 1 -0.4687 -4.7876 -4.4948 31 1 3.1886 -6.7574 -5.4700 32 1 4.4156 -5.2000 -4.0101 33 1 1.8788 -1.7990 -2.4803 34 1 3.1882 0.1502 -2.0285 35 1 4.6515 -0.8558 -2.1480 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = 2.639642 kcal Electronic energy + Delta-G solvation = -17949.664082 eV Core-core repulsion = 15165.262415 eV Total energy + Delta-G solvation = -2784.401668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68293 -37.86409 -36.36764 -33.20769 -31.56596 -31.11713 -30.69577 -28.64354 -24.62005 -23.46532 -22.47109 -22.31986 -20.48285 -18.98041 -17.27831 -17.06990 -15.55446 -15.34056 -14.62187 -14.14475 -13.88197 -13.66996 -13.53117 -13.43429 -13.16496 -12.61346 -12.43143 -12.12062 -11.56991 -11.31630 -11.27224 -11.02521 -10.80925 -10.69512 -10.61073 -10.44609 -10.17385 -9.77382 -9.34995 -8.94016 -8.92924 -8.47645 -8.28680 -7.45831 -6.48515 -4.13372 1.26488 1.40700 2.16200 3.35310 3.40801 3.58431 3.74825 4.46076 4.77753 4.93956 4.95647 5.14122 5.31291 5.43358 5.50204 5.62082 5.67927 5.82930 5.91382 6.00564 6.13303 6.20735 6.26377 6.31982 6.42051 6.49660 6.64130 6.70006 6.84496 6.86824 6.93198 7.14554 7.23144 7.83786 8.12285 8.21469 8.33609 8.83870 9.53936 10.87544 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.005011 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.380319 B = 5586.862428 C = 6048.860884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.035 3.965 3 Si 1.040 2.960 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.056 0.944 9 C -0.021 4.021 10 H 0.023 0.977 11 C -0.097 4.097 12 C -0.134 4.134 13 C 0.126 3.874 14 H 0.078 0.922 15 C -0.050 4.050 16 C -0.091 4.091 17 C -0.108 4.108 18 C -0.044 4.044 19 Cl -0.085 7.085 20 C -0.113 4.113 21 C -0.107 4.107 22 N -0.671 5.671 23 C 0.053 3.947 24 H 0.267 0.733 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.351 0.649 34 H 0.072 0.928 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -10.098 -8.789 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.170 4.170 3 Si 0.869 3.131 4 H -0.214 1.214 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.635 4.635 8 H 0.074 0.926 9 C -0.042 4.042 10 H 0.041 0.959 11 C -0.135 4.135 12 C -0.173 4.173 13 C 0.016 3.984 14 H 0.096 0.904 15 C -0.051 4.051 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.071 4.071 19 Cl -0.056 7.056 20 C -0.132 4.132 21 C -0.126 4.126 22 N -0.302 5.302 23 C -0.076 4.076 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.090 0.910 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.503 -8.395 -9.383 13.741 hybrid contribution -0.244 -2.064 0.860 2.249 sum 5.259 -10.460 -8.523 14.481 Atomic orbital electron populations 1.70857 1.07163 1.30420 1.45138 1.25732 0.96044 1.02346 0.92908 0.84117 0.75505 0.76312 0.77145 1.21356 1.19966 1.21240 1.21922 0.94275 0.96242 1.51047 0.92568 1.19701 0.98012 0.92773 0.93675 0.95882 1.21395 0.96668 0.97051 0.98381 1.22123 1.02227 0.97698 0.95220 1.20428 0.97446 0.88574 0.91990 0.90427 1.20101 0.93930 0.95199 0.95872 1.21074 0.94032 0.98285 0.97514 1.21045 1.00404 0.94410 0.96854 1.20854 0.92651 0.95310 0.98274 1.98344 1.77161 1.63141 1.66955 1.20927 0.92068 1.00241 0.99918 1.20945 0.99970 0.94993 0.96701 1.61021 1.09071 1.03435 1.56662 1.22408 0.95824 0.95824 0.93586 0.92282 0.94555 0.92992 0.93660 0.91014 0.84685 0.85189 0.85395 0.85381 0.82856 0.90962 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.69 55.43 0.76 -25.41 16 2 C 0.04 0.95 5.33 -17.82 -0.09 0.86 16 3 Si 1.04 24.13 26.36 -169.99 -4.48 19.65 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -5.84 5.62 56.52 0.32 -5.52 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.60 -15.33 7.20 -34.44 -0.25 -15.58 16 8 H 0.06 1.57 6.91 -52.49 -0.36 1.21 16 9 C -0.02 -0.47 2.18 -91.69 -0.20 -0.67 16 10 H 0.02 0.52 6.80 -51.93 -0.35 0.17 16 11 C -0.10 -1.88 5.47 -26.61 -0.15 -2.02 16 12 C -0.13 -2.39 5.07 -26.65 -0.14 -2.52 16 13 C 0.13 2.13 2.66 -68.88 -0.18 1.95 16 14 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 15 C -0.05 -0.77 4.95 -104.62 -0.52 -1.29 16 16 C -0.09 -1.41 9.28 -39.59 -0.37 -1.77 16 17 C -0.11 -1.51 9.83 -39.55 -0.39 -1.90 16 18 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 19 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 20 C -0.11 -1.40 9.83 -39.55 -0.39 -1.79 16 21 C -0.11 -1.41 9.67 -39.59 -0.38 -1.79 16 22 N -0.67 -13.03 6.31 -107.99 -0.68 -13.71 16 23 C 0.05 1.10 5.75 -3.84 -0.02 1.07 16 24 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.45 6.72 -51.93 -0.35 1.10 16 29 H 0.14 2.24 6.63 -52.48 -0.35 1.90 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.13 1.41 8.04 -52.48 -0.42 0.99 16 33 H 0.35 7.41 6.12 -39.29 -0.24 7.17 16 34 H 0.07 1.59 4.82 -51.93 -0.25 1.34 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 290.15 15.07 4.37 4.37 Total: -1.00 -26.93 290.15 -9.37 -36.30 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.51 Total: 7.61 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -3.32 Total: -26.30 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.08 Total: -39.12 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.48 Total: 19.65 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.93 -9.37 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.942 kcal (2) G-P(sol) polarization free energy of solvation -26.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds