Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48509 * 109.47307 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47128 * 239.99881 * 3 2 1 6 6 H 1.48500 * 109.47320 * 119.99938 * 3 2 1 7 7 C 1.37878 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 342.49620 * 7 2 1 9 9 C 1.50704 * 119.99699 * 162.50090 * 7 2 1 10 10 H 1.08999 * 109.49981 * 54.38388 * 9 7 2 11 11 C 1.53113 * 109.50022 * 174.46227 * 9 7 2 12 12 C 1.53119 * 109.16302 * 62.28801 * 11 9 7 13 13 C 1.53031 * 109.27992 * 57.64833 * 12 11 9 14 14 H 1.09004 * 109.45984 * 60.84176 * 13 12 11 15 15 C 1.50698 * 109.46213 * 180.80343 * 13 12 11 16 16 C 1.38242 * 119.98469 * 79.73534 * 15 13 12 17 17 C 1.38214 * 120.01485 * 179.72502 * 16 15 13 18 18 C 1.38355 * 119.98727 * 0.54199 * 17 16 15 19 19 Cl 1.73589 * 120.01668 * 179.74805 * 18 17 16 20 20 C 1.38350 * 119.96780 * 359.72934 * 18 17 16 21 21 C 1.38215 * 119.99129 * 359.97438 * 20 18 17 22 22 N 1.46847 * 109.52871 * 300.82624 * 13 12 11 23 23 C 1.46841 * 111.19716 * 61.73626 * 22 13 12 24 24 H 0.97000 * 120.00352 * 174.66897 * 1 2 3 25 25 H 1.09002 * 109.52192 * 182.19353 * 11 9 7 26 26 H 1.09002 * 109.52555 * 302.31782 * 11 9 7 27 27 H 1.09002 * 109.50712 * 177.59887 * 12 11 9 28 28 H 1.09002 * 109.50306 * 297.70900 * 12 11 9 29 29 H 1.08003 * 119.99302 * 359.97438 * 16 15 13 30 30 H 1.07997 * 120.00922 * 180.27045 * 17 16 15 31 31 H 1.08007 * 120.00615 * 179.97438 * 20 18 17 32 32 H 1.08007 * 119.99279 * 180.02562 * 21 20 18 33 33 H 1.00897 * 110.99343 * 297.64543 * 22 13 12 34 34 H 1.08997 * 109.46557 * 178.24806 * 23 22 13 35 35 H 1.08997 * 109.46540 * 58.27687 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.5020 -2.1076 0.2823 9 6 3.4592 -1.2244 -0.3919 10 1 4.0160 -0.5145 0.2197 11 6 4.0177 -2.6336 -0.1756 12 6 3.2697 -3.6153 -1.0819 13 6 3.4140 -3.1686 -2.5384 14 1 4.4684 -3.1665 -2.8149 15 6 2.6627 -4.1211 -3.4325 16 6 1.2911 -4.0086 -3.5643 17 6 0.6022 -4.8783 -4.3885 18 6 1.2840 -5.8687 -5.0730 19 17 0.4186 -6.9654 -6.1033 20 6 2.6558 -5.9842 -4.9363 21 6 3.3445 -5.1101 -4.1165 22 7 2.8648 -1.8155 -2.6936 23 6 3.5980 -0.8471 -1.8685 24 1 -0.4851 -0.8364 -0.0780 25 1 5.0793 -2.6465 -0.4223 26 1 3.8824 -2.9231 0.8666 27 1 3.6915 -4.6134 -0.9638 28 1 2.2146 -3.6310 -0.8089 29 1 0.7584 -3.2385 -3.0262 30 1 -0.4687 -4.7876 -4.4948 31 1 3.1886 -6.7574 -5.4700 32 1 4.4156 -5.2000 -4.0101 33 1 1.8788 -1.7990 -2.4803 34 1 3.1882 0.1502 -2.0285 35 1 4.6515 -0.8558 -2.1480 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = -12.644218 kcal Electronic energy + Delta-G solvation = -17950.326840 eV Core-core repulsion = 15165.262415 eV Total energy + Delta-G solvation = -2785.064425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91809 -39.24265 -37.40497 -34.99897 -33.20512 -32.45045 -31.94049 -30.05627 -26.42095 -24.86880 -23.85008 -23.59526 -21.76376 -20.78323 -19.05669 -18.28800 -16.86423 -16.52664 -16.03627 -15.74661 -15.37662 -15.30788 -14.87975 -14.63282 -14.36258 -14.17923 -13.87036 -13.65800 -12.91015 -12.70806 -12.58304 -12.41860 -12.37911 -12.20679 -11.99350 -11.80958 -11.68949 -11.54410 -11.04143 -10.86436 -10.33406 -9.98998 -9.60624 -8.99694 -8.63776 -6.27686 0.17047 0.34484 1.14513 1.49419 1.54573 1.73537 2.53470 2.64806 3.09874 3.55118 3.81422 3.85005 3.95951 4.14643 4.24270 4.35238 4.41347 4.48006 4.62260 4.70247 4.73564 4.78261 4.93062 5.01080 5.02798 5.19852 5.24885 5.27351 5.31006 5.43408 5.52292 5.65660 5.83869 6.07637 6.15813 6.40097 6.53657 6.68942 7.47099 8.71160 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.005011 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.380319 B = 5586.862428 C = 6048.860884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.014 4.014 3 Si 1.076 2.924 4 H -0.299 1.299 5 H -0.241 1.241 6 H -0.272 1.272 7 C -0.583 4.583 8 H 0.018 0.982 9 C -0.027 4.027 10 H 0.024 0.976 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.131 3.869 14 H 0.100 0.900 15 C -0.066 4.066 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.048 4.048 19 Cl -0.072 7.072 20 C -0.106 4.106 21 C -0.100 4.100 22 N -0.674 5.674 23 C 0.056 3.944 24 H 0.252 0.748 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.335 0.665 34 H 0.056 0.944 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -11.120 -10.294 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.212 4.212 3 Si 0.900 3.100 4 H -0.226 1.226 5 H -0.165 1.165 6 H -0.197 1.197 7 C -0.620 4.620 8 H 0.036 0.964 9 C -0.048 4.048 10 H 0.042 0.958 11 C -0.134 4.134 12 C -0.166 4.166 13 C 0.021 3.979 14 H 0.118 0.882 15 C -0.067 4.067 16 C -0.127 4.127 17 C -0.135 4.135 18 C -0.074 4.074 19 Cl -0.043 7.043 20 C -0.125 4.125 21 C -0.118 4.118 22 N -0.303 5.303 23 C -0.074 4.074 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.447 -9.446 -10.896 16.712 hybrid contribution -1.194 -1.892 1.313 2.594 sum 7.254 -11.338 -9.582 16.522 Atomic orbital electron populations 1.70973 1.08486 1.29479 1.48631 1.26961 0.95946 1.05833 0.92510 0.83672 0.74932 0.72361 0.79059 1.22565 1.16541 1.19738 1.22025 0.96327 0.94415 1.49273 0.96357 1.19752 0.95239 0.94870 0.94898 0.95771 1.21379 0.98518 0.95421 0.98123 1.22032 0.99877 0.98802 0.95891 1.20477 0.98575 0.87355 0.91514 0.88237 1.20049 0.93622 0.96153 0.96866 1.20948 0.94665 0.98636 0.98498 1.21106 1.00860 0.94624 0.96899 1.20995 0.93337 0.95063 0.98038 1.98350 1.77050 1.62492 1.66411 1.21271 0.91657 1.00334 0.99227 1.21219 1.01334 0.93730 0.95537 1.61032 1.08099 1.05026 1.56123 1.22326 0.97412 0.95375 0.92244 0.93951 0.91314 0.94219 0.91188 0.94714 0.87288 0.84643 0.82487 0.82445 0.84608 0.92586 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.69 21.45 0.29 -56.78 16 2 C -0.01 -0.77 5.33 84.65 0.45 -0.32 16 3 Si 1.08 48.59 26.36 68.60 1.81 50.40 16 4 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.24 -9.59 5.62 99.48 0.56 -9.03 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.58 -30.79 7.20 25.60 0.18 -30.60 16 8 H 0.02 1.08 6.91 -2.91 -0.02 1.06 16 9 C -0.03 -1.17 2.18 -11.49 -0.03 -1.20 16 10 H 0.02 1.05 6.80 -2.39 -0.02 1.03 16 11 C -0.10 -3.56 5.47 30.67 0.17 -3.39 16 12 C -0.13 -4.40 5.07 30.64 0.16 -4.25 16 13 C 0.13 4.16 2.66 44.19 0.12 4.28 16 14 H 0.10 2.77 8.00 -2.38 -0.02 2.75 16 15 C -0.07 -1.94 4.95 -19.86 -0.10 -2.04 16 16 C -0.11 -3.44 9.28 22.27 0.21 -3.23 16 17 C -0.12 -3.22 9.83 22.29 0.22 -3.00 16 18 C -0.05 -1.17 6.32 22.32 0.14 -1.03 16 19 Cl -0.07 -1.56 28.96 -2.72 -0.08 -1.64 16 20 C -0.11 -2.28 9.83 22.29 0.22 -2.06 16 21 C -0.10 -2.28 9.67 22.26 0.22 -2.06 16 22 N -0.67 -25.69 6.31 -495.59 -3.13 -28.81 16 23 C 0.06 2.21 5.75 86.33 0.50 2.71 16 24 H 0.25 15.53 8.73 -92.71 -0.81 14.73 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.03 1.45 6.72 -2.39 -0.02 1.43 16 29 H 0.11 3.95 6.63 -2.91 -0.02 3.93 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.16 2.65 8.04 -2.91 -0.02 2.63 16 33 H 0.34 14.68 6.12 -89.70 -0.55 14.13 16 34 H 0.06 2.37 4.82 -2.39 -0.01 2.36 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -60.02 290.15 1.71 -58.30 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.37 Total: 24.73 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 2.45 Total: -46.19 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -2.83 Total: -85.59 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.81 Total: 50.40 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -60.02 1.71 -58.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.660 kcal (2) G-P(sol) polarization free energy of solvation -60.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds