Wall clock time and date at job start Mon Mar 30 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47428 * 89.99441 * 3 2 1 5 5 H 1.48504 * 109.47194 * 209.99811 * 3 2 1 6 6 H 1.48508 * 109.47353 * 329.99548 * 3 2 1 7 7 C 1.37873 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00376 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99894 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.52578 * 305.54717 * 9 7 2 11 11 C 1.53123 * 109.52364 * 65.67289 * 9 7 2 12 12 C 1.53038 * 109.27706 * 62.24725 * 11 9 7 13 13 N 1.46849 * 109.52307 * 59.18192 * 12 11 9 14 14 C 1.46848 * 111.19879 * 298.25838 * 13 12 11 15 15 C 1.53040 * 109.52211 * 61.73952 * 14 13 12 16 16 H 1.08995 * 109.50119 * 60.76402 * 15 14 13 17 17 C 1.50700 * 109.49943 * 180.87914 * 15 14 13 18 18 C 1.38242 * 119.98717 * 35.71138 * 17 15 14 19 19 C 1.38216 * 120.01198 * 179.72660 * 18 17 15 20 20 C 1.38357 * 119.98656 * 0.54320 * 19 18 17 21 21 Cl 1.73598 * 120.01235 * 179.75378 * 20 19 18 22 22 C 1.38352 * 119.97103 * 359.72659 * 20 19 18 23 23 C 1.38216 * 119.99123 * 0.02562 * 22 20 19 24 24 H 0.97001 * 119.99805 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.50671 * 182.18835 * 11 9 7 26 26 H 1.09004 * 109.50082 * 302.27086 * 11 9 7 27 27 H 1.09001 * 109.46120 * 179.19653 * 12 11 9 28 28 H 1.09000 * 109.46396 * 299.17712 * 12 11 9 29 29 H 1.00901 * 110.99854 * 174.15443 * 13 12 11 30 30 H 1.09004 * 109.46230 * 181.75460 * 14 13 12 31 31 H 1.08996 * 109.46277 * 301.73525 * 14 13 12 32 32 H 1.08003 * 119.99357 * 359.97438 * 18 17 15 33 33 H 1.07995 * 120.00972 * 180.26920 * 19 18 17 34 34 H 1.08005 * 120.00307 * 180.02562 * 22 20 19 35 35 H 1.07995 * 119.99638 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6527 -0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8761 -0.5970 -0.8347 11 6 4.0227 -0.5992 1.3162 12 6 3.5571 -1.4751 2.4816 13 7 4.0730 -2.8389 2.3072 14 6 3.5577 -3.4479 1.0744 15 6 4.0233 -2.6309 -0.1330 16 1 5.1125 -2.6272 -0.1716 17 6 3.4763 -3.2439 -1.3964 18 6 2.2171 -3.8143 -1.3986 19 6 1.7126 -4.3717 -2.5585 20 6 2.4728 -4.3687 -3.7145 21 17 1.8425 -5.0743 -5.1700 22 6 3.7353 -3.8027 -3.7102 23 6 4.2366 -3.2411 -2.5510 24 1 -0.4850 0.8401 -0.0004 25 1 5.1120 -0.5635 1.3004 26 1 3.6272 0.4093 1.4375 27 1 3.9315 -1.0622 3.4184 28 1 2.4676 -1.4993 2.5051 29 1 3.8597 -3.4116 3.1101 30 1 3.9325 -4.4679 0.9890 31 1 2.4682 -3.4626 1.1044 32 1 1.6257 -3.8208 -0.4949 33 1 0.7271 -4.8133 -2.5613 34 1 4.3289 -3.7998 -4.6124 35 1 5.2219 -2.7989 -2.5476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260177711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:13 Heat of formation + Delta-G solvation = -2.103958 kcal Electronic energy + Delta-G solvation = -18321.191936 eV Core-core repulsion = 15536.584570 eV Total energy + Delta-G solvation = -2784.607366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92574 -39.01153 -37.29662 -34.81912 -33.68448 -32.46699 -31.89969 -29.49900 -27.19540 -24.61596 -24.11355 -23.18543 -22.15441 -20.21787 -18.42364 -17.98269 -17.21210 -16.39899 -16.29698 -15.82029 -15.43230 -15.26282 -14.78177 -14.37093 -14.33140 -14.15211 -13.99197 -13.71790 -13.52622 -12.83730 -12.55655 -12.37534 -12.26588 -12.22818 -11.91154 -11.68118 -11.55108 -11.13867 -10.94849 -10.81710 -10.59623 -9.82211 -9.30084 -9.22418 -8.18463 -6.16567 0.34382 0.49802 1.22905 1.30497 1.37289 1.44137 2.38439 2.81852 3.17997 3.41533 3.90963 4.04127 4.08396 4.20908 4.37241 4.42377 4.50472 4.56277 4.63226 4.74853 4.79094 4.92906 5.03198 5.13497 5.17566 5.22355 5.27579 5.34153 5.39147 5.47156 5.56286 5.75936 5.90434 6.00371 6.19774 6.43685 6.68992 6.88999 7.46163 8.96340 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.007051 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.620081 B = 3970.139399 C = 4670.008903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.015 3.985 3 Si 0.923 3.077 4 H -0.270 1.270 5 H -0.250 1.250 6 H -0.308 1.308 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.012 3.988 10 H 0.019 0.981 11 C -0.116 4.116 12 C 0.072 3.928 13 N -0.681 5.681 14 C 0.075 3.925 15 C -0.027 4.027 16 H 0.084 0.916 17 C -0.052 4.052 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.052 4.052 21 Cl -0.077 7.077 22 C -0.113 4.113 23 C -0.114 4.114 24 H 0.258 0.742 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.348 0.652 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.443 -8.204 -2.560 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.181 4.181 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.174 1.174 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.080 0.920 9 C -0.007 4.007 10 H 0.037 0.963 11 C -0.154 4.154 12 C -0.057 4.057 13 N -0.312 5.312 14 C -0.055 4.055 15 C -0.046 4.046 16 H 0.102 0.898 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.142 4.142 20 C -0.079 4.079 21 Cl -0.049 7.049 22 C -0.132 4.132 23 C -0.132 4.132 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.166 0.834 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.835 -7.955 -2.971 12.994 hybrid contribution -1.550 0.983 0.132 1.840 sum 8.285 -6.972 -2.839 11.194 Atomic orbital electron populations 1.70027 1.07810 1.27101 1.54257 1.25638 0.95069 1.01940 0.95473 0.86198 0.79597 0.80670 0.78380 1.19593 1.17382 1.23595 1.21409 0.90587 0.93337 1.46946 0.91989 1.19245 0.94783 0.93050 0.93578 0.96270 1.21802 0.99471 0.97263 0.96823 1.21671 0.96731 0.89565 0.97732 1.60316 1.62474 1.03269 1.05118 1.21855 0.96891 0.97000 0.89713 1.20018 0.99157 0.94663 0.90763 0.89776 1.19990 0.94067 0.95140 0.96061 1.21098 0.95416 0.96727 0.97904 1.21116 1.00140 1.01143 0.91813 1.20931 0.96001 1.03104 0.87852 1.98326 1.87210 1.82881 1.36436 1.21171 0.94031 0.98395 0.99564 1.21214 1.00966 0.99603 0.91441 0.93304 0.91635 0.94630 0.90532 0.96590 0.83404 0.90171 0.96014 0.86405 0.85111 0.83086 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.63 13.96 21.45 0.30 -57.33 16 2 C 0.01 0.82 5.46 84.65 0.46 1.28 16 3 Si 0.92 43.97 24.69 68.60 1.69 45.66 16 4 H -0.27 -12.32 6.87 99.48 0.68 -11.64 16 5 H -0.25 -11.14 6.39 99.48 0.64 -10.51 16 6 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 7 C -0.48 -24.86 6.48 25.60 0.17 -24.70 16 8 H 0.06 3.41 4.39 -2.91 -0.01 3.40 16 9 C 0.01 0.53 1.74 -11.46 -0.02 0.51 16 10 H 0.02 0.86 6.81 -2.39 -0.02 0.85 16 11 C -0.12 -4.52 5.19 30.65 0.16 -4.36 16 12 C 0.07 2.59 6.34 86.33 0.55 3.14 16 13 N -0.68 -21.10 6.85 -513.99 -3.52 -24.61 16 14 C 0.07 2.47 5.10 86.33 0.44 2.91 16 15 C -0.03 -0.96 2.36 -11.49 -0.03 -0.99 16 16 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 17 C -0.05 -1.81 4.60 -19.86 -0.09 -1.90 16 18 C -0.09 -3.44 7.67 22.27 0.17 -3.27 16 19 C -0.12 -4.17 9.83 22.29 0.22 -3.95 16 20 C -0.05 -1.61 6.32 22.33 0.14 -1.47 16 21 Cl -0.08 -2.09 28.96 -2.72 -0.08 -2.16 16 22 C -0.11 -3.20 9.83 22.29 0.22 -2.98 16 23 C -0.11 -3.42 9.68 22.27 0.22 -3.21 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.49 4.03 -2.39 -0.01 1.48 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.02 0.67 7.31 -2.39 -0.02 0.66 16 29 H 0.35 8.99 8.90 -89.69 -0.80 8.20 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.02 0.84 5.29 -2.39 -0.01 0.82 16 32 H 0.12 4.70 5.05 -2.91 -0.01 4.69 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -60.23 282.14 1.22 -59.01 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.23 Total: 18.43 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 2.60 Total: -38.99 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.22 Total: -81.94 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.66 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.16 kcal Total: -60.23 1.22 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.903 kcal (2) G-P(sol) polarization free energy of solvation -60.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds