Wall clock time and date at job start Mon Mar 30 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00461 * 2 1 4 4 H 1.48504 * 109.47125 * 270.00342 * 3 2 1 5 5 H 1.48506 * 109.47112 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.47543 * 150.00173 * 3 2 1 7 7 C 1.37882 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99701 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00060 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.56959 * 54.16688 * 9 7 2 11 11 C 1.53115 * 109.49431 * 293.98722 * 9 7 2 12 12 C 1.53035 * 109.31014 * 297.70901 * 11 9 7 13 13 N 1.46848 * 109.52525 * 300.83941 * 12 11 9 14 14 C 1.46851 * 111.19310 * 61.74275 * 13 12 11 15 15 C 1.53040 * 109.52404 * 298.25632 * 14 13 12 16 16 H 1.09003 * 109.50176 * 299.20600 * 15 14 13 17 17 C 1.50695 * 109.50341 * 179.12391 * 15 14 13 18 18 C 1.38243 * 119.98806 * 144.35242 * 17 15 14 19 19 C 1.38217 * 120.01413 * 180.27687 * 18 17 15 20 20 C 1.38348 * 119.98511 * 359.46373 * 19 18 17 21 21 Cl 1.73605 * 120.01464 * 180.23460 * 20 19 18 22 22 C 1.38361 * 119.97576 * 0.55382 * 20 19 18 23 23 C 1.38217 * 119.98448 * 359.70130 * 22 20 19 24 24 H 0.96996 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 177.76853 * 11 9 7 26 26 H 1.09003 * 109.53792 * 57.69008 * 11 9 7 27 27 H 1.09005 * 109.46740 * 180.82443 * 12 11 9 28 28 H 1.09002 * 109.46564 * 60.85406 * 12 11 9 29 29 H 1.00895 * 110.99996 * 185.83509 * 13 12 11 30 30 H 1.09004 * 109.45948 * 178.24564 * 14 13 12 31 31 H 1.08994 * 109.45745 * 58.27316 * 14 13 12 32 32 H 1.07994 * 119.99349 * 359.97438 * 18 17 15 33 33 H 1.07995 * 120.00727 * 179.69914 * 19 18 17 34 34 H 1.07994 * 120.01094 * 179.67753 * 22 20 19 35 35 H 1.07993 * 119.99467 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8770 -0.5924 0.8321 11 6 4.0220 -0.6084 -1.3194 12 6 3.5573 -1.4923 -2.4790 13 7 4.0739 -2.8546 -2.2953 14 6 3.5584 -3.4556 -1.0586 15 6 4.0232 -2.6302 0.1435 16 1 5.1125 -2.6262 0.1829 17 6 3.4761 -3.2350 1.4108 18 6 4.2330 -3.2175 2.5675 19 6 3.7341 -3.7771 3.7287 20 6 2.4725 -4.3450 3.7360 21 17 1.8427 -5.0427 5.1956 22 6 1.7156 -4.3626 2.5779 23 6 2.2177 -3.8074 1.4160 24 1 -0.4849 0.8400 -0.0004 25 1 5.1113 -0.5719 -1.3034 26 1 3.6261 0.3990 -1.4483 27 1 3.9317 -1.0855 -3.4185 28 1 2.4679 -1.5172 -2.5028 29 1 3.8611 -3.4328 -3.0943 30 1 3.9337 -4.4748 -0.9662 31 1 2.4690 -3.4711 -1.0891 32 1 5.2162 -2.7708 2.5626 33 1 4.3274 -3.7677 4.6310 34 1 0.7329 -4.8104 2.5817 35 1 1.6272 -3.8214 0.5119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260177717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:15 Heat of formation + Delta-G solvation = 14.681400 kcal Electronic energy + Delta-G solvation = -18319.686428 eV Core-core repulsion = 15535.806931 eV Total energy + Delta-G solvation = -2783.879498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51477 -37.59236 -36.05921 -33.01909 -32.15081 -30.84474 -30.52209 -28.08585 -25.34266 -23.21026 -22.63688 -21.67519 -20.72033 -18.54073 -16.98364 -16.26018 -15.74884 -14.99834 -14.64776 -14.27653 -13.89156 -13.71518 -13.31130 -13.05488 -12.74331 -12.66464 -12.47241 -12.02304 -11.96789 -11.26968 -11.09511 -11.04571 -10.82413 -10.55627 -10.44657 -10.09557 -9.90674 -9.50723 -9.32183 -8.97955 -8.60639 -8.47613 -7.95199 -7.77376 -6.09462 -4.07213 1.66938 1.80257 2.47636 3.23980 3.36288 3.36840 4.15043 4.39379 4.78587 5.19923 5.22071 5.30033 5.48407 5.63309 5.78446 5.86801 5.92416 5.95588 6.08755 6.15100 6.27029 6.29961 6.44766 6.56723 6.60303 6.66171 6.76270 6.84857 6.94374 7.00100 7.15552 7.30870 7.33457 7.65653 7.76234 7.96819 8.47028 8.91907 9.53498 11.02587 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.007059 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.652037 B = 3965.710094 C = 4667.499244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.083 0.917 9 C 0.016 3.984 10 H 0.031 0.969 11 C -0.114 4.114 12 C 0.068 3.932 13 N -0.692 5.692 14 C 0.071 3.929 15 C -0.032 4.032 16 H 0.066 0.934 17 C -0.033 4.033 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.047 4.047 21 Cl -0.094 7.094 22 C -0.112 4.112 23 C -0.077 4.077 24 H 0.262 0.738 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.331 0.669 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.833 -7.676 2.172 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.101 0.899 9 C -0.003 4.003 10 H 0.049 0.951 11 C -0.152 4.152 12 C -0.061 4.061 13 N -0.321 5.321 14 C -0.058 4.058 15 C -0.051 4.051 16 H 0.084 0.916 17 C -0.034 4.034 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.073 4.073 21 Cl -0.065 7.065 22 C -0.131 4.131 23 C -0.095 4.095 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.193 -7.404 2.595 10.644 hybrid contribution -0.733 0.952 -0.058 1.203 sum 6.461 -6.451 2.537 9.476 Atomic orbital electron populations 1.69884 1.06165 1.26802 1.50949 1.24954 0.94582 0.98750 0.94600 0.86991 0.80348 0.84212 0.77986 1.20543 1.22357 1.18976 1.21114 0.88501 0.94530 1.50431 0.89946 1.19250 0.97327 0.90588 0.93090 0.95133 1.21827 0.98181 0.97888 0.97273 1.21777 0.98743 0.88417 0.97171 1.60323 1.63338 1.03956 1.04531 1.21905 0.98302 0.95896 0.89733 1.20079 0.98314 0.96799 0.89906 0.91605 1.19912 0.93845 0.94298 0.95347 1.20914 1.00212 1.00118 0.92003 1.20830 0.94272 0.99721 0.98757 1.20781 0.95709 1.03355 0.87449 1.98322 1.87333 1.83522 1.37335 1.20995 0.99612 1.00928 0.91577 1.21164 0.94913 0.95414 0.97959 0.92788 0.93943 0.93129 0.93023 0.93190 0.85291 0.92549 0.93517 0.85826 0.85888 0.85707 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.87 21.23 24.71 -169.99 -4.20 17.03 16 4 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.23 6.38 56.52 0.36 -5.87 16 7 C -0.51 -12.83 6.48 -34.44 -0.22 -13.05 16 8 H 0.08 2.18 4.41 -52.48 -0.23 1.95 16 9 C 0.02 0.36 1.74 -91.65 -0.16 0.20 16 10 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 11 C -0.11 -2.34 5.19 -26.65 -0.14 -2.48 16 12 C 0.07 1.27 6.34 -3.83 -0.02 1.25 16 13 N -0.69 -11.53 6.85 -113.81 -0.78 -12.31 16 14 C 0.07 1.22 5.10 -3.83 -0.02 1.20 16 15 C -0.03 -0.60 2.35 -91.69 -0.22 -0.81 16 16 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 17 C -0.03 -0.60 4.60 -104.62 -0.48 -1.08 16 18 C -0.11 -1.86 9.68 -39.59 -0.38 -2.25 16 19 C -0.12 -1.81 9.83 -39.55 -0.39 -2.20 16 20 C -0.05 -0.76 6.32 -39.50 -0.25 -1.01 16 21 Cl -0.09 -1.35 28.96 -51.86 -1.50 -2.85 16 22 C -0.11 -1.91 9.83 -39.54 -0.39 -2.30 16 23 C -0.08 -1.40 7.67 -39.59 -0.30 -1.70 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.11 4.09 -51.93 -0.21 0.89 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 1.06 7.31 -51.93 -0.38 0.68 16 29 H 0.33 4.69 8.90 -39.29 -0.35 4.34 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.89 5.29 -51.93 -0.27 0.61 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.14 2.58 5.05 -52.49 -0.27 2.31 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -27.83 282.21 -8.74 -36.57 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.21 Total: 5.18 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -3.07 Total: -22.35 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.01 Total: -37.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.20 Total: 17.03 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.85 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.83 -8.74 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.253 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds