Wall clock time and date at job start Mon Mar 30 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00461 * 2 1 4 4 H 1.48504 * 109.47125 * 270.00342 * 3 2 1 5 5 H 1.48506 * 109.47112 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.47543 * 150.00173 * 3 2 1 7 7 C 1.37882 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99701 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00060 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.56959 * 54.16688 * 9 7 2 11 11 C 1.53115 * 109.49431 * 293.98722 * 9 7 2 12 12 C 1.53035 * 109.31014 * 297.70901 * 11 9 7 13 13 N 1.46848 * 109.52525 * 300.83941 * 12 11 9 14 14 C 1.46851 * 111.19310 * 61.74275 * 13 12 11 15 15 C 1.53040 * 109.52404 * 298.25632 * 14 13 12 16 16 H 1.09003 * 109.50176 * 299.20600 * 15 14 13 17 17 C 1.50695 * 109.50341 * 179.12391 * 15 14 13 18 18 C 1.38243 * 119.98806 * 144.35242 * 17 15 14 19 19 C 1.38217 * 120.01413 * 180.27687 * 18 17 15 20 20 C 1.38348 * 119.98511 * 359.46373 * 19 18 17 21 21 Cl 1.73605 * 120.01464 * 180.23460 * 20 19 18 22 22 C 1.38361 * 119.97576 * 0.55382 * 20 19 18 23 23 C 1.38217 * 119.98448 * 359.70130 * 22 20 19 24 24 H 0.96996 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 177.76853 * 11 9 7 26 26 H 1.09003 * 109.53792 * 57.69008 * 11 9 7 27 27 H 1.09005 * 109.46740 * 180.82443 * 12 11 9 28 28 H 1.09002 * 109.46564 * 60.85406 * 12 11 9 29 29 H 1.00895 * 110.99996 * 185.83509 * 13 12 11 30 30 H 1.09004 * 109.45948 * 178.24564 * 14 13 12 31 31 H 1.08994 * 109.45745 * 58.27316 * 14 13 12 32 32 H 1.07994 * 119.99349 * 359.97438 * 18 17 15 33 33 H 1.07995 * 120.00727 * 179.69914 * 19 18 17 34 34 H 1.07994 * 120.01094 * 179.67753 * 22 20 19 35 35 H 1.07993 * 119.99467 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8770 -0.5924 0.8321 11 6 4.0220 -0.6084 -1.3194 12 6 3.5573 -1.4923 -2.4790 13 7 4.0739 -2.8546 -2.2953 14 6 3.5584 -3.4556 -1.0586 15 6 4.0232 -2.6302 0.1435 16 1 5.1125 -2.6262 0.1829 17 6 3.4761 -3.2350 1.4108 18 6 4.2330 -3.2175 2.5675 19 6 3.7341 -3.7771 3.7287 20 6 2.4725 -4.3450 3.7360 21 17 1.8427 -5.0427 5.1956 22 6 1.7156 -4.3626 2.5779 23 6 2.2177 -3.8074 1.4160 24 1 -0.4849 0.8400 -0.0004 25 1 5.1113 -0.5719 -1.3034 26 1 3.6261 0.3990 -1.4483 27 1 3.9317 -1.0855 -3.4185 28 1 2.4679 -1.5172 -2.5028 29 1 3.8611 -3.4328 -3.0943 30 1 3.9337 -4.4748 -0.9662 31 1 2.4690 -3.4711 -1.0891 32 1 5.2162 -2.7708 2.5626 33 1 4.3274 -3.7677 4.6310 34 1 0.7329 -4.8104 2.5817 35 1 1.6272 -3.8214 0.5119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260177717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:15 Heat of formation + Delta-G solvation = -2.319005 kcal Electronic energy + Delta-G solvation = -18320.423621 eV Core-core repulsion = 15535.806931 eV Total energy + Delta-G solvation = -2784.616691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92417 -39.00994 -37.29615 -34.81879 -33.68375 -32.46613 -31.89879 -29.49860 -27.19468 -24.61774 -24.11355 -23.18182 -22.15152 -20.21845 -18.42164 -17.98365 -17.21245 -16.39779 -16.29459 -15.81905 -15.43139 -15.26222 -14.77949 -14.37202 -14.33071 -14.15298 -13.99204 -13.71607 -13.52248 -12.83797 -12.55627 -12.37345 -12.26701 -12.22983 -11.91101 -11.68379 -11.55091 -11.13980 -10.94814 -10.81738 -10.59631 -9.82266 -9.29991 -9.22428 -8.18425 -6.16500 0.34395 0.49836 1.22855 1.30578 1.37335 1.44190 2.38527 2.81903 3.18048 3.41574 3.90971 4.04194 4.08453 4.20903 4.37271 4.42404 4.50596 4.56332 4.63226 4.74848 4.79152 4.92965 5.03343 5.13520 5.17536 5.22403 5.27668 5.34239 5.39177 5.47177 5.56376 5.75933 5.90461 6.00401 6.19780 6.43685 6.69000 6.89028 7.46195 8.96409 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.007059 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.652037 B = 3965.710094 C = 4667.499244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.015 3.985 3 Si 0.923 3.077 4 H -0.270 1.270 5 H -0.308 1.308 6 H -0.250 1.250 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.012 3.988 10 H 0.019 0.981 11 C -0.115 4.115 12 C 0.072 3.928 13 N -0.681 5.681 14 C 0.075 3.925 15 C -0.027 4.027 16 H 0.084 0.916 17 C -0.052 4.052 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.052 4.052 21 Cl -0.077 7.077 22 C -0.124 4.124 23 C -0.093 4.093 24 H 0.258 0.742 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.348 0.652 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.444 -8.182 2.605 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.181 4.181 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.236 1.236 6 H -0.174 1.174 7 C -0.523 4.523 8 H 0.080 0.920 9 C -0.007 4.007 10 H 0.038 0.962 11 C -0.153 4.153 12 C -0.057 4.057 13 N -0.312 5.312 14 C -0.055 4.055 15 C -0.046 4.046 16 H 0.102 0.898 17 C -0.053 4.053 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.079 4.079 21 Cl -0.049 7.049 22 C -0.142 4.142 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.166 0.834 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.836 -7.930 3.015 12.990 hybrid contribution -1.550 0.978 -0.134 1.838 sum 8.286 -6.952 2.881 11.193 Atomic orbital electron populations 1.70027 1.07813 1.27101 1.54259 1.25641 0.95068 1.01943 0.95473 0.86198 0.79616 0.80667 0.78393 1.19591 1.23575 1.17358 1.21405 0.90584 0.93320 1.46946 0.92022 1.19247 0.94778 0.93066 0.93568 0.96242 1.21797 0.99461 0.97257 0.96822 1.21671 0.96722 0.89562 0.97741 1.60320 1.62458 1.03312 1.05087 1.21855 0.96886 0.97027 0.89693 1.20019 0.99155 0.94698 0.90737 0.89784 1.19990 0.94073 0.95176 0.96028 1.21213 1.01005 0.99585 0.91413 1.21168 0.94025 0.98412 0.99569 1.20933 0.96034 1.03149 0.87757 1.98327 1.87221 1.83218 1.36093 1.21117 1.00191 1.01153 0.91768 1.21097 0.95395 0.96740 0.97894 0.93306 0.91653 0.94620 0.90528 0.96597 0.83408 0.90174 0.96018 0.83391 0.83089 0.85100 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 13.96 21.45 0.30 -57.34 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.92 43.95 24.71 68.60 1.70 45.65 16 4 H -0.27 -12.32 6.87 99.48 0.68 -11.64 16 5 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.25 -11.13 6.38 99.48 0.63 -10.49 16 7 C -0.48 -24.85 6.48 25.60 0.17 -24.68 16 8 H 0.06 3.39 4.41 -2.91 -0.01 3.38 16 9 C 0.01 0.53 1.74 -11.46 -0.02 0.51 16 10 H 0.02 0.87 6.79 -2.39 -0.02 0.86 16 11 C -0.12 -4.51 5.19 30.64 0.16 -4.35 16 12 C 0.07 2.59 6.34 86.32 0.55 3.14 16 13 N -0.68 -21.09 6.85 -513.98 -3.52 -24.61 16 14 C 0.07 2.47 5.10 86.33 0.44 2.91 16 15 C -0.03 -0.97 2.35 -11.49 -0.03 -0.99 16 16 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 17 C -0.05 -1.81 4.60 -19.86 -0.09 -1.91 16 18 C -0.11 -3.42 9.68 22.27 0.22 -3.21 16 19 C -0.11 -3.20 9.83 22.29 0.22 -2.98 16 20 C -0.05 -1.61 6.32 22.33 0.14 -1.47 16 21 Cl -0.08 -2.09 28.96 -2.72 -0.08 -2.17 16 22 C -0.12 -4.18 9.83 22.29 0.22 -3.96 16 23 C -0.09 -3.43 7.67 22.27 0.17 -3.26 16 24 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.04 1.49 4.09 -2.39 -0.01 1.48 16 27 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.02 0.67 7.31 -2.39 -0.02 0.65 16 29 H 0.35 8.99 8.90 -89.70 -0.80 8.19 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.02 0.83 5.29 -2.39 -0.01 0.82 16 32 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.12 4.70 5.05 -2.91 -0.01 4.68 16 Total: -1.00 -60.23 282.21 1.22 -59.01 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.23 Total: 18.43 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.60 Total: -38.97 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.22 Total: -81.95 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.70 Total: 45.65 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.17 kcal Total: -60.23 1.22 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.688 kcal (2) G-P(sol) polarization free energy of solvation -60.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds