Wall clock time and date at job start Mon Mar 30 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48504 * 109.46761 * 269.99752 * 3 2 1 5 5 H 1.48497 * 109.47105 * 29.99735 * 3 2 1 6 6 H 1.48495 * 109.46988 * 150.00080 * 3 2 1 7 7 C 1.37882 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47215 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47044 * 55.00172 * 10 9 7 12 12 N 1.46903 * 109.47017 * 295.00422 * 10 9 7 13 13 C 1.50697 * 109.47230 * 175.00498 * 10 9 7 14 14 C 1.38122 * 119.88531 * 100.00380 * 13 10 9 15 15 C 1.38335 * 119.92030 * 180.02562 * 14 13 10 16 16 Cl 1.73599 * 120.04584 * 180.02562 * 15 14 13 17 17 C 1.38259 * 119.90565 * 359.97438 * 15 14 13 18 18 C 1.38434 * 120.20740 * 0.02562 * 17 15 14 19 19 C 1.38266 * 119.86169 * 359.97438 * 18 17 15 20 20 C 1.51377 * 109.74466 * 179.97438 * 19 18 17 21 21 C 1.54341 * 105.17533 * 342.80990 * 20 19 18 22 22 C 1.51370 * 130.38382 * 179.97438 * 18 17 15 23 23 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47003 * 60.00454 * 9 7 2 25 25 H 1.08997 * 109.47681 * 300.00275 * 9 7 2 26 26 H 1.00907 * 110.99338 * 176.04500 * 12 10 9 27 27 H 1.00900 * 111.00193 * 299.99394 * 12 10 9 28 28 H 1.07998 * 120.04264 * 0.26919 * 14 13 10 29 29 H 1.08001 * 119.89621 * 179.97438 * 17 15 14 30 30 H 1.08999 * 110.30372 * 223.88074 * 20 19 18 31 31 H 1.09008 * 110.37951 * 101.77610 * 20 19 18 32 32 H 1.09001 * 110.81818 * 268.12949 * 21 20 19 33 33 H 1.08997 * 110.98561 * 144.66171 * 21 20 19 34 34 H 1.09000 * 110.30094 * 316.12037 * 22 18 17 35 35 H 1.08995 * 110.30365 * 78.27153 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 1 2.9301 -3.5548 0.8427 12 7 3.0075 -3.6543 -1.2544 13 6 1.4961 -4.9636 0.1263 14 6 1.2549 -5.7294 -0.9976 15 6 0.5667 -6.9240 -0.8838 16 17 0.2623 -7.8894 -2.2941 17 6 0.1225 -7.3485 0.3548 18 6 0.3639 -6.5815 1.4816 19 6 1.0518 -5.3875 1.3674 20 6 1.1851 -4.7417 2.7300 21 6 0.1334 -5.4441 3.6146 22 6 -0.0112 -6.8194 2.9287 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.7153 -4.3736 -1.2521 27 1 2.3947 -3.7526 -2.0499 28 1 1.6066 -5.3979 -1.9634 29 1 -0.4151 -8.2810 0.4433 30 1 0.9729 -3.6745 2.6651 31 1 2.1858 -4.9041 3.1307 32 1 -0.8116 -4.9012 3.5981 33 1 0.4956 -5.5572 4.6364 34 1 -1.0406 -7.1706 2.9997 35 1 0.6678 -7.5417 3.3816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:16 Heat of formation + Delta-G solvation = -0.013270 kcal Electronic energy + Delta-G solvation = -17716.469111 eV Core-core repulsion = 14931.952405 eV Total energy + Delta-G solvation = -2784.516706 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19654 -36.75247 -36.23934 -34.50436 -32.46491 -30.44586 -28.98602 -28.11513 -26.99716 -24.50238 -22.34232 -21.13196 -20.71307 -19.21270 -16.72353 -16.05074 -15.89667 -15.26903 -15.03891 -14.75054 -14.31377 -13.69286 -13.24024 -13.20030 -12.80901 -12.66011 -12.18618 -11.92721 -11.50051 -11.34872 -11.26494 -11.17657 -10.97064 -10.87146 -10.72714 -10.51964 -10.39749 -10.24943 -9.60751 -9.09235 -8.41146 -8.30564 -8.12944 -7.99867 -5.92379 -3.91454 1.35176 1.47807 2.22246 3.38092 3.43993 3.47885 3.76571 4.51488 4.54912 4.68052 5.03966 5.10749 5.19263 5.28134 5.33797 5.44060 5.49537 5.66846 5.69037 5.83030 5.86621 5.97360 6.15824 6.22571 6.27394 6.29767 6.42537 6.49460 6.72436 6.89057 7.02478 7.51842 7.68940 7.95377 8.07419 8.13845 8.50751 9.14691 9.70671 11.19223 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.005828 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.577854 B = 4803.371827 C = 5751.110474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.133 3.867 11 H 0.082 0.918 12 N -0.823 5.823 13 C -0.072 4.072 14 C -0.120 4.120 15 C -0.030 4.030 16 Cl -0.082 7.082 17 C -0.115 4.115 18 C -0.089 4.089 19 C -0.079 4.079 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.078 4.078 23 H 0.258 0.742 24 H 0.015 0.985 25 H 0.022 0.978 26 H 0.323 0.677 27 H 0.335 0.665 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -15.582 3.490 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.002 3.998 10 C 0.021 3.979 11 H 0.100 0.900 12 N -0.351 5.351 13 C -0.075 4.075 14 C -0.139 4.139 15 C -0.056 4.056 16 Cl -0.053 7.053 17 C -0.134 4.134 18 C -0.090 4.090 19 C -0.079 4.079 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.115 4.115 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.134 0.866 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.669 -14.782 3.567 15.221 hybrid contribution -0.126 -0.213 -0.500 0.558 sum 0.542 -14.995 3.066 15.315 Atomic orbital electron populations 1.69969 1.06005 1.26387 1.51850 1.25016 0.94790 0.99158 0.95877 0.86586 0.79752 0.83578 0.77989 1.20855 1.21574 1.19957 1.21144 0.93364 0.89982 1.48810 0.91941 1.19113 0.92778 0.90502 0.97401 1.20825 0.94809 0.89994 0.92297 0.89984 1.58801 1.17873 1.54298 1.04103 1.20944 0.97675 0.97733 0.91123 1.20753 1.00481 0.93356 0.99301 1.20612 1.03094 0.94269 0.87647 1.98341 1.94925 1.71265 1.40789 1.20265 1.02463 1.00633 0.90043 1.20503 0.98612 0.95061 0.94813 1.20491 0.97517 0.95099 0.94833 1.21115 0.99387 1.01467 0.90448 1.22300 0.99831 0.95016 0.98566 1.21030 1.01576 0.98353 0.90517 0.93228 0.96624 0.95958 0.86586 0.85076 0.85225 0.85805 0.88999 0.90294 0.90744 0.90641 0.90844 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -13.70 8.84 -34.44 -0.30 -14.00 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.04 0.98 4.60 -27.89 -0.13 0.85 16 10 C 0.13 2.62 2.70 -68.86 -0.19 2.43 16 11 H 0.08 1.65 8.00 -51.93 -0.42 1.23 16 12 N -0.82 -15.00 8.42 -5.65 -0.05 -15.04 16 13 C -0.07 -1.26 5.08 -104.58 -0.53 -1.79 16 14 C -0.12 -1.94 9.03 -39.59 -0.36 -2.30 16 15 C -0.03 -0.45 6.32 -39.54 -0.25 -0.70 16 16 Cl -0.08 -1.09 28.96 -51.86 -1.50 -2.59 16 17 C -0.12 -1.63 9.82 -39.50 -0.39 -2.02 16 18 C -0.09 -1.29 6.14 -104.21 -0.64 -1.93 16 19 C -0.08 -1.28 6.00 -104.19 -0.63 -1.90 16 20 C -0.09 -1.27 6.32 -26.85 -0.17 -1.44 16 21 C -0.12 -1.40 7.08 -25.32 -0.18 -1.58 16 22 C -0.08 -0.88 6.77 -26.84 -0.18 -1.06 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 26 H 0.32 4.95 9.06 -39.29 -0.36 4.59 16 27 H 0.34 5.92 7.28 -39.29 -0.29 5.63 16 28 H 0.13 1.97 6.23 -52.49 -0.33 1.65 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.09 1.54 7.11 -51.93 -0.37 1.17 16 31 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -30.00 303.41 -9.92 -39.92 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.62 Total: 6.58 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.04 Total: -24.06 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.69 Total: -41.29 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.00 -9.92 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.909 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds