Wall clock time and date at job start Mon Mar 30 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48504 * 109.46761 * 269.99752 * 3 2 1 5 5 H 1.48497 * 109.47105 * 29.99735 * 3 2 1 6 6 H 1.48495 * 109.46988 * 150.00080 * 3 2 1 7 7 C 1.37882 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47215 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47044 * 55.00172 * 10 9 7 12 12 N 1.46903 * 109.47017 * 295.00422 * 10 9 7 13 13 C 1.50697 * 109.47230 * 175.00498 * 10 9 7 14 14 C 1.38122 * 119.88531 * 100.00380 * 13 10 9 15 15 C 1.38335 * 119.92030 * 180.02562 * 14 13 10 16 16 Cl 1.73599 * 120.04584 * 180.02562 * 15 14 13 17 17 C 1.38259 * 119.90565 * 359.97438 * 15 14 13 18 18 C 1.38434 * 120.20740 * 0.02562 * 17 15 14 19 19 C 1.38266 * 119.86169 * 359.97438 * 18 17 15 20 20 C 1.51377 * 109.74466 * 179.97438 * 19 18 17 21 21 C 1.54341 * 105.17533 * 342.80990 * 20 19 18 22 22 C 1.51370 * 130.38382 * 179.97438 * 18 17 15 23 23 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47003 * 60.00454 * 9 7 2 25 25 H 1.08997 * 109.47681 * 300.00275 * 9 7 2 26 26 H 1.00907 * 110.99338 * 176.04500 * 12 10 9 27 27 H 1.00900 * 111.00193 * 299.99394 * 12 10 9 28 28 H 1.07998 * 120.04264 * 0.26919 * 14 13 10 29 29 H 1.08001 * 119.89621 * 179.97438 * 17 15 14 30 30 H 1.08999 * 110.30372 * 223.88074 * 20 19 18 31 31 H 1.09008 * 110.37951 * 101.77610 * 20 19 18 32 32 H 1.09001 * 110.81818 * 268.12949 * 21 20 19 33 33 H 1.08997 * 110.98561 * 144.66171 * 21 20 19 34 34 H 1.09000 * 110.30094 * 316.12037 * 22 18 17 35 35 H 1.08995 * 110.30365 * 78.27153 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 1 2.9301 -3.5548 0.8427 12 7 3.0075 -3.6543 -1.2544 13 6 1.4961 -4.9636 0.1263 14 6 1.2549 -5.7294 -0.9976 15 6 0.5667 -6.9240 -0.8838 16 17 0.2623 -7.8894 -2.2941 17 6 0.1225 -7.3485 0.3548 18 6 0.3639 -6.5815 1.4816 19 6 1.0518 -5.3875 1.3674 20 6 1.1851 -4.7417 2.7300 21 6 0.1334 -5.4441 3.6146 22 6 -0.0112 -6.8194 2.9287 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.7153 -4.3736 -1.2521 27 1 2.3947 -3.7526 -2.0499 28 1 1.6066 -5.3979 -1.9634 29 1 -0.4151 -8.2810 0.4433 30 1 0.9729 -3.6745 2.6651 31 1 2.1858 -4.9041 3.1307 32 1 -0.8116 -4.9012 3.5981 33 1 0.4956 -5.5572 4.6364 34 1 -1.0406 -7.1706 2.9997 35 1 0.6678 -7.5417 3.3816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:16 Heat of formation + Delta-G solvation = -17.118938 kcal Electronic energy + Delta-G solvation = -17717.210869 eV Core-core repulsion = 14931.952405 eV Total energy + Delta-G solvation = -2785.258464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38132 -37.86074 -37.65338 -35.80750 -34.50109 -31.70194 -30.48200 -29.69177 -28.09144 -26.29843 -23.85723 -22.41720 -21.90197 -20.58639 -18.54048 -17.56543 -17.14568 -16.74498 -16.25998 -16.18648 -15.96118 -15.14019 -14.42754 -14.39671 -14.31277 -14.11513 -13.69997 -13.20928 -13.01525 -12.82361 -12.67317 -12.55009 -12.38922 -12.29240 -12.06721 -12.00297 -11.80006 -11.69624 -11.29989 -11.19786 -10.51633 -9.66930 -9.47119 -9.35174 -8.12110 -6.18594 0.15553 0.26913 1.07965 1.42424 1.43698 1.54576 2.45653 2.56649 3.21017 3.44877 3.60501 3.82017 3.91333 4.07215 4.18528 4.23730 4.31142 4.43239 4.54704 4.69227 4.82289 4.87566 4.94310 5.00213 5.10755 5.15761 5.22182 5.30909 5.38960 5.48690 5.58701 5.68243 5.82838 5.86456 6.27811 6.46283 6.75532 6.95328 7.48058 8.99639 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.005828 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.577854 B = 4803.371827 C = 5751.110474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.149 3.851 11 H 0.075 0.925 12 N -0.830 5.830 13 C -0.095 4.095 14 C -0.128 4.128 15 C -0.037 4.037 16 Cl -0.066 7.066 17 C -0.111 4.111 18 C -0.089 4.089 19 C -0.100 4.100 20 C -0.090 4.090 21 C -0.114 4.114 22 C -0.072 4.072 23 H 0.259 0.741 24 H -0.017 1.017 25 H -0.002 1.002 26 H 0.342 0.658 27 H 0.338 0.662 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -17.093 4.250 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.013 3.987 10 C 0.037 3.963 11 H 0.093 0.907 12 N -0.360 5.360 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.063 4.063 16 Cl -0.038 7.038 17 C -0.130 4.130 18 C -0.090 4.090 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.152 4.152 22 C -0.109 4.109 23 H 0.068 0.932 24 H 0.001 0.999 25 H 0.016 0.984 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.109 -16.312 4.325 16.912 hybrid contribution -0.280 0.191 -0.768 0.839 sum 0.830 -16.121 3.557 16.530 Atomic orbital electron populations 1.70103 1.07631 1.27300 1.52984 1.25886 0.95627 1.02954 0.95558 0.85518 0.78712 0.79061 0.78129 1.20401 1.21083 1.18863 1.21478 0.93417 0.91332 1.48166 0.92129 1.18873 0.93050 0.92188 0.94543 1.20306 0.93685 0.89554 0.92730 0.90694 1.58692 1.18281 1.55468 1.03549 1.20714 0.99263 0.97232 0.92543 1.20805 1.00980 0.93984 0.98972 1.20724 1.02798 0.94066 0.88748 1.98344 1.94776 1.70609 1.40030 1.20616 1.01576 1.01359 0.89445 1.20924 0.97358 0.94006 0.96679 1.20803 0.97953 0.96361 0.94944 1.21161 1.01212 0.99601 0.90752 1.22322 0.98443 0.94888 0.99520 1.21116 1.03273 0.98354 0.88110 0.93180 0.99907 0.98363 0.84516 0.84817 0.84993 0.83099 0.92467 0.89056 0.91620 0.87838 0.88950 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 3 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.51 -28.79 8.84 25.60 0.23 -28.56 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.05 2.66 4.60 29.84 0.14 2.80 16 10 C 0.15 6.10 2.70 44.17 0.12 6.22 16 11 H 0.08 3.12 8.00 -2.39 -0.02 3.10 16 12 N -0.83 -30.71 8.42 -171.80 -1.45 -32.16 16 13 C -0.09 -3.39 5.08 -19.84 -0.10 -3.49 16 14 C -0.13 -4.15 9.03 22.27 0.20 -3.95 16 15 C -0.04 -1.06 6.32 22.30 0.14 -0.92 16 16 Cl -0.07 -1.66 28.96 -2.72 -0.08 -1.74 16 17 C -0.11 -2.89 9.82 22.32 0.22 -2.67 16 18 C -0.09 -2.39 6.14 -19.60 -0.12 -2.51 16 19 C -0.10 -3.23 6.00 -19.59 -0.12 -3.35 16 20 C -0.09 -2.63 6.32 30.52 0.19 -2.44 16 21 C -0.11 -2.47 7.08 31.51 0.22 -2.24 16 22 C -0.07 -1.39 6.77 30.52 0.21 -1.18 16 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 25 H 0.00 -0.10 7.11 -2.39 -0.02 -0.12 16 26 H 0.34 10.41 9.06 -89.69 -0.81 9.60 16 27 H 0.34 12.19 7.28 -89.69 -0.65 11.54 16 28 H 0.13 4.05 6.23 -2.91 -0.02 4.04 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.06 2.04 7.11 -2.39 -0.02 2.02 16 31 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.78 303.41 2.23 -63.55 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.35 Total: 22.44 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 1.79 Total: -42.06 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.16 Total: -89.63 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -65.78 2.23 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.432 kcal (2) G-P(sol) polarization free energy of solvation -65.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds