Wall clock time and date at job start Mon Mar 30 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99367 * 2 1 4 4 H 1.48492 * 109.46953 * 240.00126 * 3 2 1 5 5 H 1.48505 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47117 * 119.99803 * 3 2 1 7 7 C 1.37870 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00212 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.57277 * 54.16151 * 9 7 2 11 11 C 1.53118 * 109.52282 * 294.00246 * 9 7 2 12 12 C 1.53039 * 109.27520 * 297.74985 * 11 9 7 13 13 N 1.46844 * 109.52218 * 300.81585 * 12 11 9 14 14 C 1.46852 * 111.19507 * 61.74825 * 13 12 11 15 15 C 1.53031 * 109.52103 * 298.25103 * 14 13 12 16 16 H 1.08999 * 109.50684 * 299.20025 * 15 14 13 17 17 C 1.50703 * 109.50418 * 179.12202 * 15 14 13 18 18 C 1.38270 * 119.98830 * 324.98249 * 17 15 14 19 19 C 1.38226 * 120.02130 * 179.97438 * 18 17 15 20 20 C 1.38230 * 120.01255 * 0.02797 * 19 18 17 21 21 C 1.38329 * 119.99228 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.01478 * 180.02562 * 21 20 19 23 23 C 1.38184 * 119.99517 * 145.30482 * 17 15 14 24 24 H 0.96993 * 120.00785 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50594 * 177.80939 * 11 9 7 26 26 H 1.09000 * 109.53539 * 57.70951 * 11 9 7 27 27 H 1.09000 * 109.45830 * 180.80542 * 12 11 9 28 28 H 1.09001 * 109.45831 * 60.83392 * 12 11 9 29 29 H 1.00898 * 111.00488 * 297.64619 * 13 12 11 30 30 H 1.09008 * 109.45795 * 178.23990 * 14 13 12 31 31 H 1.09001 * 109.46140 * 58.27145 * 14 13 12 32 32 H 1.07994 * 119.98995 * 0.02562 * 18 17 15 33 33 H 1.07997 * 119.99031 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.00494 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.00973 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2513 -2.4991 0.0005 10 1 0.5483 -2.5149 -0.8323 11 6 0.4866 -2.6485 1.3186 12 6 1.4832 -2.6867 2.4794 13 7 2.4055 -3.8148 2.2973 14 6 3.1850 -3.6691 1.0614 15 6 2.2393 -3.6603 -0.1417 16 1 1.6918 -4.6019 -0.1812 17 6 3.0378 -3.4891 -1.4082 18 6 4.1696 -2.6948 -1.4096 19 6 4.9029 -2.5378 -2.5708 20 6 4.5046 -3.1743 -3.7314 21 6 3.3724 -3.9691 -3.7306 22 17 2.8722 -4.7693 -5.1877 23 6 2.6351 -4.1206 -2.5695 24 1 -0.4851 0.8399 0.0004 25 1 -0.0890 -3.5740 1.3026 26 1 -0.1885 -1.8023 1.4463 27 1 0.9427 -2.8074 3.4182 28 1 2.0488 -1.7552 2.5031 29 1 1.9094 -4.6933 2.3106 30 1 3.8807 -4.5034 0.9703 31 1 3.7427 -2.7331 1.0919 32 1 4.4813 -2.1976 -0.5030 33 1 5.7870 -1.9176 -2.5712 34 1 5.0779 -3.0519 -4.6385 35 1 1.7484 -4.7371 -2.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260270618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:11 Heat of formation + Delta-G solvation = 6.248959 kcal Electronic energy + Delta-G solvation = -18342.498423 eV Core-core repulsion = 15558.253267 eV Total energy + Delta-G solvation = -2784.245156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52314 -37.58518 -36.08832 -32.98854 -32.25892 -30.41191 -29.88740 -28.17165 -25.20952 -23.05583 -22.73871 -21.67764 -20.54376 -19.01443 -16.78185 -15.87439 -15.37198 -14.99706 -14.89350 -14.43285 -13.80048 -13.38176 -13.23834 -13.17123 -12.94284 -12.45051 -11.96582 -11.52386 -11.44420 -11.20033 -11.05581 -10.90112 -10.77406 -10.70205 -10.56275 -10.24869 -10.02704 -9.84896 -9.33680 -8.87024 -8.49886 -8.36952 -8.09625 -7.47015 -6.04784 -4.08120 1.65794 1.76704 2.43838 3.27855 3.33179 3.35436 4.13464 4.39412 5.02055 5.17895 5.26437 5.29819 5.53159 5.66295 5.77133 5.83514 5.96569 6.10585 6.17223 6.30559 6.36474 6.42434 6.49724 6.61655 6.64017 6.81900 6.85650 7.06839 7.16060 7.23701 7.31695 7.52286 7.65544 7.85796 8.00135 8.10441 8.34727 8.92312 9.55581 11.03278 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.007525 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.049895 B = 3720.144832 C = 4414.896850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.060 3.940 10 H 0.030 0.970 11 C -0.141 4.141 12 C 0.067 3.933 13 N -0.688 5.688 14 C 0.073 3.927 15 C -0.083 4.083 16 H 0.054 0.946 17 C -0.017 4.017 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.034 4.034 22 Cl -0.092 7.092 23 C -0.116 4.116 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.325 0.675 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -7.273 -2.967 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.042 3.958 10 H 0.048 0.952 11 C -0.181 4.181 12 C -0.062 4.062 13 N -0.314 5.314 14 C -0.057 4.057 15 C -0.103 4.103 16 H 0.072 0.928 17 C -0.018 4.018 18 C -0.110 4.110 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.061 4.061 22 Cl -0.063 7.063 23 C -0.135 4.135 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.564 -6.928 -2.667 9.910 hybrid contribution -0.497 0.839 -1.050 1.433 sum 6.067 -6.090 -3.716 9.365 Atomic orbital electron populations 1.69890 1.05874 1.26543 1.50498 1.24908 0.94712 0.98821 0.95230 0.86812 0.79811 0.83775 0.78628 1.20279 1.21416 1.20229 1.21128 0.92892 0.89998 1.50355 0.92022 1.18674 0.92201 0.91152 0.93817 0.95182 1.22165 0.98676 0.99795 0.97419 1.21927 0.93582 0.94297 0.96434 1.60837 1.29287 1.05222 1.36086 1.22016 0.95157 1.01553 0.86959 1.21091 0.97447 1.00108 0.91645 0.92805 1.19764 0.93820 0.93568 0.94660 1.21266 0.94485 0.96670 0.98569 1.21034 1.00124 0.99497 0.92506 1.20823 0.96467 0.98663 0.98942 1.20777 0.97819 1.00096 0.87383 1.98325 1.91299 1.79293 1.37409 1.20865 0.99688 1.01762 0.91187 0.93009 0.96498 0.89388 0.93409 0.90089 0.85981 0.92827 0.89993 0.84985 0.85864 0.85990 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 11.77 55.43 0.65 -23.78 16 2 C 0.06 1.69 5.32 -17.82 -0.09 1.60 16 3 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -12.40 5.90 -34.44 -0.20 -12.61 16 8 H 0.06 1.46 4.20 -52.49 -0.22 1.24 16 9 C 0.06 1.37 2.05 -91.65 -0.19 1.18 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.14 -3.06 5.44 -26.65 -0.15 -3.21 16 12 C 0.07 1.30 6.35 -3.83 -0.02 1.27 16 13 N -0.69 -11.99 6.87 -113.81 -0.78 -12.77 16 14 C 0.07 1.28 5.09 -3.83 -0.02 1.26 16 15 C -0.08 -1.56 2.34 -91.69 -0.21 -1.77 16 16 H 0.05 0.97 8.05 -51.93 -0.42 0.55 16 17 C -0.02 -0.31 4.59 -104.63 -0.48 -0.79 16 18 C -0.09 -1.61 7.67 -39.57 -0.30 -1.91 16 19 C -0.11 -1.76 10.05 -39.59 -0.40 -2.16 16 20 C -0.13 -1.99 9.83 -39.55 -0.39 -2.38 16 21 C -0.03 -0.56 6.32 -39.50 -0.25 -0.81 16 22 Cl -0.09 -1.34 28.96 -51.86 -1.50 -2.84 16 23 C -0.12 -2.03 9.47 -39.55 -0.37 -2.40 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 2.18 6.53 -51.93 -0.34 1.84 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.76 7.31 -51.93 -0.38 1.38 16 29 H 0.32 5.13 8.86 -39.29 -0.35 4.78 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 31 H 0.08 1.55 5.27 -51.93 -0.27 1.27 16 32 H 0.13 2.29 5.08 -52.49 -0.27 2.03 16 33 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -26.17 289.22 -9.72 -35.89 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.34 Total: 6.39 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.08 Total: -22.74 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.13 Total: -36.56 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.17 -9.72 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.139 kcal (2) G-P(sol) polarization free energy of solvation -26.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds