Wall clock time and date at job start Mon Mar 30 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99367 * 2 1 4 4 H 1.48492 * 109.46953 * 240.00126 * 3 2 1 5 5 H 1.48505 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47117 * 119.99803 * 3 2 1 7 7 C 1.37870 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00212 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.57277 * 54.16151 * 9 7 2 11 11 C 1.53118 * 109.52282 * 294.00246 * 9 7 2 12 12 C 1.53039 * 109.27520 * 297.74985 * 11 9 7 13 13 N 1.46844 * 109.52218 * 300.81585 * 12 11 9 14 14 C 1.46852 * 111.19507 * 61.74825 * 13 12 11 15 15 C 1.53031 * 109.52103 * 298.25103 * 14 13 12 16 16 H 1.08999 * 109.50684 * 299.20025 * 15 14 13 17 17 C 1.50703 * 109.50418 * 179.12202 * 15 14 13 18 18 C 1.38270 * 119.98830 * 324.98249 * 17 15 14 19 19 C 1.38226 * 120.02130 * 179.97438 * 18 17 15 20 20 C 1.38230 * 120.01255 * 0.02797 * 19 18 17 21 21 C 1.38329 * 119.99228 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.01478 * 180.02562 * 21 20 19 23 23 C 1.38184 * 119.99517 * 145.30482 * 17 15 14 24 24 H 0.96993 * 120.00785 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50594 * 177.80939 * 11 9 7 26 26 H 1.09000 * 109.53539 * 57.70951 * 11 9 7 27 27 H 1.09000 * 109.45830 * 180.80542 * 12 11 9 28 28 H 1.09001 * 109.45831 * 60.83392 * 12 11 9 29 29 H 1.00898 * 111.00488 * 297.64619 * 13 12 11 30 30 H 1.09008 * 109.45795 * 178.23990 * 14 13 12 31 31 H 1.09001 * 109.46140 * 58.27145 * 14 13 12 32 32 H 1.07994 * 119.98995 * 0.02562 * 18 17 15 33 33 H 1.07997 * 119.99031 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.00494 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.00973 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2513 -2.4991 0.0005 10 1 0.5483 -2.5149 -0.8323 11 6 0.4866 -2.6485 1.3186 12 6 1.4832 -2.6867 2.4794 13 7 2.4055 -3.8148 2.2973 14 6 3.1850 -3.6691 1.0614 15 6 2.2393 -3.6603 -0.1417 16 1 1.6918 -4.6019 -0.1812 17 6 3.0378 -3.4891 -1.4082 18 6 4.1696 -2.6948 -1.4096 19 6 4.9029 -2.5378 -2.5708 20 6 4.5046 -3.1743 -3.7314 21 6 3.3724 -3.9691 -3.7306 22 17 2.8722 -4.7693 -5.1877 23 6 2.6351 -4.1206 -2.5695 24 1 -0.4851 0.8399 0.0004 25 1 -0.0890 -3.5740 1.3026 26 1 -0.1885 -1.8023 1.4463 27 1 0.9427 -2.8074 3.4182 28 1 2.0488 -1.7552 2.5031 29 1 1.9094 -4.6933 2.3106 30 1 3.8807 -4.5034 0.9703 31 1 3.7427 -2.7331 1.0919 32 1 4.4813 -2.1976 -0.5030 33 1 5.7870 -1.9176 -2.5712 34 1 5.0779 -3.0519 -4.6385 35 1 1.7484 -4.7371 -2.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:10 Heat of formation + Delta-G solvation = -7.844379 kcal Electronic energy + Delta-G solvation = -18343.109556 eV Core-core repulsion = 15558.253267 eV Total energy + Delta-G solvation = -2784.856289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94153 -39.02768 -37.31724 -34.81620 -33.72641 -31.76749 -31.55947 -29.59898 -27.08650 -24.48035 -24.24241 -23.10723 -22.03757 -20.65995 -18.26752 -17.52361 -16.98562 -16.36711 -16.27671 -16.17521 -15.29734 -14.90486 -14.69527 -14.62853 -14.36420 -13.94166 -13.68535 -13.09316 -12.98583 -12.68235 -12.62788 -12.49571 -12.31866 -12.19374 -11.92293 -11.87456 -11.69473 -11.54429 -10.92885 -10.68433 -10.45260 -9.69611 -9.44451 -8.99927 -8.03753 -6.10172 0.36296 0.47954 1.20356 1.42378 1.43664 1.48343 2.46503 2.82858 3.28852 3.58652 3.89834 4.00591 4.16357 4.31684 4.43217 4.47446 4.58765 4.61188 4.68646 4.76063 4.83185 4.96610 5.08369 5.13586 5.27745 5.34815 5.38192 5.51470 5.55435 5.67808 5.75961 5.86482 5.99324 6.01781 6.32346 6.43076 6.72067 6.98458 7.55517 9.03806 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.007525 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.049895 B = 3720.144832 C = 4414.896850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.071 0.929 9 C 0.059 3.941 10 H -0.016 1.016 11 C -0.137 4.137 12 C 0.079 3.921 13 N -0.679 5.679 14 C 0.079 3.921 15 C -0.074 4.074 16 H 0.060 0.940 17 C -0.038 4.038 18 C -0.106 4.106 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.043 4.043 22 Cl -0.078 7.078 23 C -0.130 4.130 24 H 0.254 0.746 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.339 0.661 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 -7.962 -3.241 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.041 3.959 10 H 0.002 0.998 11 C -0.176 4.176 12 C -0.051 4.051 13 N -0.306 5.306 14 C -0.051 4.051 15 C -0.094 4.094 16 H 0.079 0.921 17 C -0.039 4.039 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.146 4.146 21 C -0.069 4.069 22 Cl -0.049 7.049 23 C -0.149 4.149 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.633 -7.637 -2.939 11.894 hybrid contribution -1.130 0.979 -1.050 1.827 sum 7.503 -6.658 -3.988 10.795 Atomic orbital electron populations 1.70041 1.07191 1.26594 1.52610 1.25587 0.95278 1.01742 0.95841 0.85983 0.78632 0.80502 0.78866 1.19885 1.22209 1.19332 1.21459 0.93379 0.90524 1.47966 0.91136 1.18575 0.92259 0.92492 0.92591 0.99755 1.22060 0.98739 0.98804 0.98034 1.21722 0.92994 0.94197 0.96181 1.60799 1.28658 1.05163 1.36009 1.21982 0.94997 1.01987 0.86104 1.20928 0.96946 0.98455 0.93055 0.92138 1.19774 0.94575 0.94921 0.94612 1.21366 0.94723 0.96897 0.99423 1.21382 1.00604 0.99180 0.91718 1.21181 0.95980 0.97476 0.99922 1.20934 0.98061 1.00301 0.87604 1.98328 1.91253 1.79025 1.36326 1.20960 1.00063 1.02199 0.91671 0.93662 0.95355 0.92892 0.91543 0.92466 0.84385 0.90263 0.91268 0.85198 0.82911 0.83321 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.48 11.77 21.45 0.25 -52.23 16 2 C 0.01 0.70 5.32 84.65 0.45 1.15 16 3 Si 0.93 42.33 29.54 68.60 2.03 44.36 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.50 -24.48 5.90 25.60 0.15 -24.33 16 8 H 0.07 3.31 4.20 -2.91 -0.01 3.30 16 9 C 0.06 2.75 2.05 -11.46 -0.02 2.73 16 10 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.14 -6.02 5.44 30.65 0.17 -5.85 16 12 C 0.08 3.00 6.35 86.33 0.55 3.55 16 13 N -0.68 -22.29 6.87 -513.99 -3.53 -25.81 16 14 C 0.08 2.62 5.09 86.32 0.44 3.06 16 15 C -0.07 -2.73 2.34 -11.49 -0.03 -2.75 16 16 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 17 C -0.04 -1.35 4.59 -19.87 -0.09 -1.44 16 18 C -0.11 -3.53 7.67 22.27 0.17 -3.36 16 19 C -0.11 -3.14 10.05 22.26 0.22 -2.91 16 20 C -0.13 -3.53 9.83 22.29 0.22 -3.31 16 21 C -0.04 -1.31 6.32 22.33 0.14 -1.17 16 22 Cl -0.08 -2.14 28.96 -2.72 -0.08 -2.22 16 23 C -0.13 -4.45 9.47 22.29 0.21 -4.24 16 24 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 2.71 6.53 -2.39 -0.02 2.70 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.47 7.31 -2.39 -0.02 2.45 16 29 H 0.34 9.81 8.86 -89.70 -0.79 9.01 16 30 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.07 2.50 5.27 -2.39 -0.01 2.49 16 32 H 0.13 4.31 5.08 -2.91 -0.01 4.30 16 33 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -56.65 289.22 1.57 -55.08 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.32 Total: 19.70 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 2.58 Total: -38.88 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.28 Total: -78.05 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -56.65 1.57 -55.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.238 kcal (2) G-P(sol) polarization free energy of solvation -56.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds