Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47577 * 270.00172 * 3 2 1 5 5 H 1.48502 * 109.47223 * 30.00586 * 3 2 1 6 6 H 1.48499 * 109.47005 * 150.00054 * 3 2 1 7 7 C 1.37881 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.38234 * 120.04436 * 84.72184 * 10 9 7 12 12 Cl 1.73599 * 119.98046 * 0.02562 * 11 10 9 13 13 C 1.38387 * 120.04965 * 180.02562 * 11 10 9 14 14 C 1.38291 * 120.13263 * 0.02562 * 13 11 10 15 15 C 1.38090 * 120.08933 * 359.97438 * 14 13 11 16 16 C 1.38872 * 120.04036 * 264.74296 * 10 9 7 17 17 N 1.39665 * 120.06607 * 0.02562 * 16 10 9 18 18 C 1.48533 * 110.99888 * 174.30559 * 17 16 10 19 19 C 1.54936 * 103.22914 * 159.71880 * 18 17 16 20 20 C 1.54593 * 102.92349 * 322.58281 * 19 18 17 21 21 C 1.47901 * 110.99997 * 291.69661 * 17 16 10 22 22 H 0.97007 * 120.00064 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47549 * 59.99752 * 9 7 2 24 24 H 1.09001 * 109.46670 * 299.99351 * 9 7 2 25 25 H 1.07990 * 119.93710 * 180.02562 * 13 11 10 26 26 H 1.07997 * 119.95385 * 179.70578 * 14 13 11 27 27 H 1.07994 * 120.02700 * 179.97438 * 15 14 13 28 28 H 1.08998 * 110.66650 * 278.15374 * 18 17 16 29 29 H 1.08997 * 110.67057 * 41.28000 * 18 17 16 30 30 H 1.09006 * 110.72115 * 204.22893 * 19 18 17 31 31 H 1.08999 * 110.72415 * 80.94304 * 19 18 17 32 32 H 1.08997 * 110.31134 * 263.04340 * 20 19 18 33 33 H 1.09002 * 110.31229 * 140.87112 * 20 19 18 34 34 H 1.08999 * 109.92165 * 333.51359 * 21 17 16 35 35 H 1.09001 * 109.91931 * 94.80950 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6447 -0.0015 11 6 2.7627 -4.0997 1.1903 12 17 2.3026 -3.3517 2.6877 13 6 3.6624 -5.1512 1.1906 14 6 4.0317 -5.7493 -0.0004 15 6 3.5032 -5.2992 -1.1941 16 6 2.5992 -4.2441 -1.1986 17 7 2.0639 -3.7863 -2.4046 18 6 2.6938 -4.4729 -3.5613 19 6 1.6666 -4.2611 -4.7016 20 6 0.3094 -4.3864 -3.9721 21 6 0.6193 -4.0909 -2.4928 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5564 -0.8919 24 1 0.6240 -2.5575 0.8881 25 1 4.0769 -5.5055 2.1227 26 1 4.7377 -6.5665 0.0028 27 1 3.7926 -5.7667 -2.1236 28 1 3.6476 -4.0084 -3.8115 29 1 2.8247 -5.5348 -3.3536 30 1 1.7689 -5.0359 -5.4616 31 1 1.7778 -3.2703 -5.1420 32 1 -0.0871 -5.3958 -4.0812 33 1 -0.3993 -3.6563 -4.3633 34 1 0.3858 -4.9637 -1.8830 35 1 0.0376 -3.2329 -2.1559 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260320523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = 13.132325 kcal Electronic energy + Delta-G solvation = -18185.220782 eV Core-core repulsion = 15401.274111 eV Total energy + Delta-G solvation = -2783.946671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37089 -38.77018 -37.05062 -35.43873 -33.57134 -32.83759 -29.93732 -29.56691 -28.50117 -25.24113 -24.14265 -22.30099 -21.61239 -21.23909 -18.51239 -18.13561 -17.10543 -16.73600 -16.50605 -16.14017 -15.73232 -14.93441 -14.61515 -14.33480 -14.00299 -13.89493 -13.52933 -13.29269 -13.01052 -12.94405 -12.70465 -12.46512 -12.35063 -12.22056 -12.00862 -11.91177 -11.72435 -11.45634 -11.36516 -11.14889 -10.45571 -10.22387 -9.41229 -8.71863 -8.09268 -6.15561 0.33366 0.51826 1.37685 1.38322 1.43351 1.48951 2.43675 2.75489 3.09266 3.22282 3.70678 3.82637 4.07036 4.08139 4.16206 4.26514 4.39462 4.55800 4.57960 4.68323 4.76244 4.89316 4.97429 4.99308 5.07582 5.11309 5.24596 5.32490 5.46045 5.47903 5.53340 5.78072 5.84371 5.92847 6.09104 6.30433 6.51026 6.91378 7.47310 8.99888 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.009557 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.731508 B = 2929.219741 C = 4334.079070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.488 4.488 8 H 0.037 0.963 9 C 0.059 3.941 10 C -0.081 4.081 11 C -0.039 4.039 12 Cl -0.083 7.083 13 C -0.139 4.139 14 C -0.096 4.096 15 C -0.168 4.168 16 C 0.092 3.908 17 N -0.485 5.485 18 C 0.026 3.974 19 C -0.115 4.115 20 C -0.123 4.123 21 C 0.041 3.959 22 H 0.260 0.740 23 H 0.032 0.968 24 H 0.000 1.000 25 H 0.147 0.853 26 H 0.168 0.832 27 H 0.160 0.840 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -14.121 -6.411 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.083 4.083 11 C -0.066 4.066 12 Cl -0.054 7.054 13 C -0.158 4.158 14 C -0.115 4.115 15 C -0.188 4.188 16 C -0.005 4.005 17 N -0.202 5.202 18 C -0.100 4.100 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.084 4.084 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.165 0.835 26 H 0.185 0.815 27 H 0.177 0.823 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.718 -13.346 -6.345 15.845 hybrid contribution -0.128 0.855 0.706 1.116 sum 5.590 -12.491 -5.639 14.801 Atomic orbital electron populations 1.70057 1.07148 1.27123 1.52722 1.25650 0.95612 1.02068 0.95576 0.85692 0.78728 0.79877 0.78254 1.20009 1.20716 1.19666 1.21014 0.91952 0.91080 1.48606 0.94455 1.18200 0.92791 0.89928 0.96793 1.20117 0.99952 0.96992 0.91286 1.20918 1.01203 0.97907 0.86574 1.98317 1.91832 1.82708 1.32560 1.21216 0.98071 0.95850 1.00671 1.21215 0.99675 1.00226 0.90350 1.21764 1.00575 0.95889 1.00616 1.18962 0.98363 0.93490 0.89709 1.61720 1.04305 1.53122 1.01012 1.23599 0.98959 0.98175 0.89300 1.22487 0.92769 1.03080 0.96966 1.22419 0.98666 1.02872 0.92178 1.22921 0.87639 0.99304 0.98577 0.93115 0.94994 0.98143 0.83520 0.81481 0.82297 0.89664 0.90488 0.87594 0.91583 0.89087 0.90985 0.93948 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.95 46.73 29.54 68.60 2.03 48.75 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 7 C -0.49 -28.77 9.09 25.60 0.23 -28.54 16 8 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 9 C 0.06 3.23 4.33 29.10 0.13 3.36 16 10 C -0.08 -3.67 4.98 -19.71 -0.10 -3.77 16 11 C -0.04 -1.59 6.31 22.30 0.14 -1.45 16 12 Cl -0.08 -3.50 27.40 -2.72 -0.07 -3.57 16 13 C -0.14 -4.36 9.83 22.32 0.22 -4.15 16 14 C -0.10 -2.52 10.04 22.25 0.22 -2.29 16 15 C -0.17 -4.88 8.93 22.40 0.20 -4.68 16 16 C 0.09 3.54 5.19 38.21 0.20 3.74 16 17 N -0.49 -17.87 4.87 -682.79 -3.32 -21.19 16 18 C 0.03 0.66 5.63 86.65 0.49 1.14 16 19 C -0.12 -2.51 7.06 31.80 0.22 -2.29 16 20 C -0.12 -3.07 6.93 31.47 0.22 -2.85 16 21 C 0.04 1.42 5.55 86.45 0.48 1.90 16 22 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 23 H 0.03 1.81 4.25 -2.39 -0.01 1.80 16 24 H 0.00 0.02 7.13 -2.39 -0.02 0.01 16 25 H 0.15 3.78 8.06 -2.92 -0.02 3.76 16 26 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.16 3.46 5.53 -2.91 -0.02 3.45 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.60 5.85 -2.39 -0.01 1.59 16 30 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.45 7.76 -2.39 -0.02 1.43 16 35 H 0.06 2.55 5.90 -2.39 -0.01 2.54 16 Total: -1.00 -69.87 295.02 3.12 -66.75 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.09 Total: 5.21 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.11 Total: -38.93 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -3.04 Total: -78.21 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 17 Polarization: -3.50 SS G_CDS: -0.07 Total: -3.57 kcal Total: -69.87 3.12 -66.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260320523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.885 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds