Wall clock time and date at job start Mon Mar 30 2020 06:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48494 * 109.47612 * 270.00232 * 3 2 1 5 5 H 1.48507 * 109.46995 * 30.00469 * 3 2 1 6 6 H 1.48500 * 109.47010 * 149.99712 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47341 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46915 * 55.00142 * 10 9 7 12 12 N 1.46900 * 109.47189 * 295.00045 * 10 9 7 13 13 C 1.50708 * 109.47076 * 174.99919 * 10 9 7 14 14 C 1.38258 * 119.99170 * 259.99721 * 13 10 9 15 15 C 1.38220 * 120.02363 * 180.02562 * 14 13 10 16 16 C 1.38241 * 120.01345 * 359.96180 * 15 14 13 17 17 C 1.50699 * 120.00374 * 180.02562 * 16 15 14 18 18 C 1.53000 * 117.50321 * 60.00118 * 17 16 15 19 19 C 1.52997 * 117.50247 * 351.37218 * 17 16 15 20 20 C 1.38329 * 119.98479 * 0.29391 * 16 15 14 21 21 Cl 1.73604 * 120.01083 * 179.70289 * 20 16 15 22 22 C 1.38188 * 119.98954 * 80.02417 * 13 10 9 23 23 H 0.97001 * 120.00006 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47127 * 60.00018 * 9 7 2 25 25 H 1.09002 * 109.46959 * 300.00456 * 9 7 2 26 26 H 1.00895 * 111.00214 * 299.99931 * 12 10 9 27 27 H 1.00903 * 110.99576 * 63.95588 * 12 10 9 28 28 H 1.08001 * 119.98834 * 0.02789 * 14 13 10 29 29 H 1.07999 * 119.99754 * 179.97438 * 15 14 13 30 30 H 1.09002 * 115.55636 * 205.68517 * 17 16 15 31 31 H 1.08990 * 117.49990 * 145.01584 * 18 17 16 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 17 16 33 33 H 1.08999 * 117.49685 * 0.02562 * 19 17 16 34 34 H 1.08999 * 117.52022 * 214.97066 * 19 17 16 35 35 H 1.08005 * 120.01291 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 7 3.0086 -3.6538 -1.2557 13 6 1.4961 -4.9636 0.1233 14 6 1.4104 -5.5979 1.3488 15 6 0.7238 -6.7920 1.4631 16 6 0.1215 -7.3524 0.3521 17 6 -0.6277 -8.6540 0.4770 18 6 -1.8200 -8.6939 1.4350 19 6 -0.5179 -9.4078 1.8038 20 6 0.2113 -6.7208 -0.8754 21 17 -0.5382 -7.4279 -2.2725 22 6 0.8951 -5.5231 -0.9882 23 1 -0.4850 0.8401 0.0004 24 1 0.6243 -2.5567 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.3964 -3.7516 -2.0518 27 1 3.5703 -2.8190 -1.3319 28 1 1.8803 -5.1602 2.2172 29 1 0.6575 -7.2873 2.4205 30 1 -0.6947 -9.2473 -0.4349 31 1 -2.6713 -9.3134 1.1534 32 1 -2.0622 -7.7786 1.9752 33 1 0.0958 -8.9621 2.5866 34 1 -0.5129 -10.4971 1.7653 35 1 0.9628 -5.0280 -1.9456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:50 Heat of formation + Delta-G solvation = 24.971314 kcal Electronic energy + Delta-G solvation = -17251.895573 eV Core-core repulsion = 14468.462280 eV Total energy + Delta-G solvation = -2783.433294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71955 -37.26294 -36.34957 -34.92474 -32.48981 -30.54258 -29.81774 -28.01283 -25.09885 -23.13395 -22.61934 -22.09068 -20.77733 -19.51472 -17.07410 -16.57189 -15.86061 -15.00622 -14.67361 -14.65070 -14.60893 -13.65931 -13.55320 -13.22990 -12.95054 -12.53818 -12.16511 -11.78984 -11.67690 -11.38267 -11.31240 -11.19698 -10.92679 -10.83193 -10.60690 -10.46716 -10.38338 -10.26973 -9.91020 -9.22396 -8.53595 -8.50988 -8.23550 -7.69892 -6.11419 -4.16572 1.43688 1.55664 2.35917 3.24714 3.31990 3.34414 3.65675 4.08174 4.36063 4.51308 4.78535 4.93601 4.99711 5.16567 5.24603 5.26922 5.47825 5.53482 5.63337 5.73609 5.79493 5.90362 6.01106 6.04527 6.10470 6.34752 6.49985 6.62315 6.65125 6.95599 7.09518 7.41242 7.53302 7.81679 7.98511 8.16347 8.27903 8.89985 9.48993 10.99118 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.004453 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.006528 B = 6287.088359 C = 6548.823545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.125 3.875 11 H 0.080 0.920 12 N -0.840 5.840 13 C -0.037 4.037 14 C -0.110 4.110 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.114 4.114 18 C -0.168 4.168 19 C -0.178 4.178 20 C -0.026 4.026 21 Cl -0.081 7.081 22 C -0.095 4.095 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.020 0.980 26 H 0.329 0.671 27 H 0.348 0.652 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -16.209 1.142 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.038 4.038 10 C 0.013 3.987 11 H 0.098 0.902 12 N -0.369 5.369 13 C -0.038 4.038 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.063 4.063 17 C -0.132 4.132 18 C -0.205 4.205 19 C -0.214 4.214 20 C -0.052 4.052 21 Cl -0.052 7.052 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.141 0.859 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.700 -16.806 1.306 16.872 hybrid contribution -0.331 1.867 -0.365 1.931 sum -1.032 -14.939 0.940 15.004 Atomic orbital electron populations 1.69971 1.06122 1.26821 1.49918 1.25014 0.94817 0.99329 0.94975 0.86580 0.79852 0.83342 0.78161 1.20614 1.21196 1.19776 1.21136 0.92902 0.90737 1.51791 0.92446 1.19805 0.94384 0.91613 0.97980 1.20579 0.94620 0.90274 0.93201 0.90237 1.59272 1.27943 1.45935 1.03713 1.20138 0.95510 0.95963 0.92199 1.21096 0.99355 0.94798 0.97623 1.20865 0.98318 0.96064 0.97616 1.18787 0.99983 0.95654 0.91919 1.20986 1.01199 0.95750 0.95253 1.23013 0.91793 1.02892 1.02792 1.23057 1.00948 0.99132 0.98287 1.20628 1.01015 0.96059 0.87542 1.98325 1.81345 1.83875 1.41693 1.20796 0.97057 0.93638 0.99870 0.92846 0.96362 0.96140 0.85931 0.83858 0.85504 0.85576 0.86749 0.88584 0.88453 0.88332 0.88593 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.01 8.55 -34.44 -0.29 -14.30 16 8 H 0.06 1.46 7.15 -52.48 -0.38 1.09 16 9 C 0.00 0.01 4.60 -27.89 -0.13 -0.11 16 10 C 0.12 2.47 2.99 -68.86 -0.21 2.27 16 11 H 0.08 1.59 8.00 -51.93 -0.42 1.18 16 12 N -0.84 -15.40 9.02 -5.65 -0.05 -15.45 16 13 C -0.04 -0.67 4.96 -104.63 -0.52 -1.19 16 14 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 15 C -0.11 -1.55 9.30 -39.59 -0.37 -1.92 16 16 C -0.06 -0.90 5.61 -104.59 -0.59 -1.49 16 17 C -0.11 -1.34 5.56 -91.77 -0.51 -1.85 16 18 C -0.17 -1.72 10.16 -26.73 -0.27 -1.99 16 19 C -0.18 -1.69 9.86 -26.73 -0.26 -1.95 16 20 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 21 Cl -0.08 -1.14 27.41 -51.86 -1.42 -2.56 16 22 C -0.09 -1.63 9.08 -39.55 -0.36 -1.98 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.33 5.82 7.35 -39.29 -0.29 5.53 16 27 H 0.35 6.47 7.90 -39.29 -0.31 6.16 16 28 H 0.13 1.83 8.04 -52.49 -0.42 1.41 16 29 H 0.13 1.44 6.02 -52.49 -0.32 1.12 16 30 H 0.11 1.32 7.15 -51.93 -0.37 0.95 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.90 6.18 -51.93 -0.32 0.58 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.13 2.20 6.66 -52.48 -0.35 1.85 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -28.62 306.15 -9.80 -38.42 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.42 Total: 10.10 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -4.24 Total: -25.73 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.69 Total: -40.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.42 Total: -2.56 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.62 -9.80 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.389 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds