Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48494 * 109.47612 * 270.00232 * 3 2 1 5 5 H 1.48507 * 109.46995 * 30.00469 * 3 2 1 6 6 H 1.48500 * 109.47010 * 149.99712 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47341 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46915 * 55.00142 * 10 9 7 12 12 N 1.46900 * 109.47189 * 295.00045 * 10 9 7 13 13 C 1.50708 * 109.47076 * 174.99919 * 10 9 7 14 14 C 1.38258 * 119.99170 * 259.99721 * 13 10 9 15 15 C 1.38220 * 120.02363 * 180.02562 * 14 13 10 16 16 C 1.38241 * 120.01345 * 359.96180 * 15 14 13 17 17 C 1.50699 * 120.00374 * 180.02562 * 16 15 14 18 18 C 1.53000 * 117.50321 * 60.00118 * 17 16 15 19 19 C 1.52997 * 117.50247 * 351.37218 * 17 16 15 20 20 C 1.38329 * 119.98479 * 0.29391 * 16 15 14 21 21 Cl 1.73604 * 120.01083 * 179.70289 * 20 16 15 22 22 C 1.38188 * 119.98954 * 80.02417 * 13 10 9 23 23 H 0.97001 * 120.00006 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47127 * 60.00018 * 9 7 2 25 25 H 1.09002 * 109.46959 * 300.00456 * 9 7 2 26 26 H 1.00895 * 111.00214 * 299.99931 * 12 10 9 27 27 H 1.00903 * 110.99576 * 63.95588 * 12 10 9 28 28 H 1.08001 * 119.98834 * 0.02789 * 14 13 10 29 29 H 1.07999 * 119.99754 * 179.97438 * 15 14 13 30 30 H 1.09002 * 115.55636 * 205.68517 * 17 16 15 31 31 H 1.08990 * 117.49990 * 145.01584 * 18 17 16 32 32 H 1.09004 * 117.49237 * 359.97438 * 18 17 16 33 33 H 1.08999 * 117.49685 * 0.02562 * 19 17 16 34 34 H 1.08999 * 117.52022 * 214.97066 * 19 17 16 35 35 H 1.08005 * 120.01291 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 7 3.0086 -3.6538 -1.2557 13 6 1.4961 -4.9636 0.1233 14 6 1.4104 -5.5979 1.3488 15 6 0.7238 -6.7920 1.4631 16 6 0.1215 -7.3524 0.3521 17 6 -0.6277 -8.6540 0.4770 18 6 -1.8200 -8.6939 1.4350 19 6 -0.5179 -9.4078 1.8038 20 6 0.2113 -6.7208 -0.8754 21 17 -0.5382 -7.4279 -2.2725 22 6 0.8951 -5.5231 -0.9882 23 1 -0.4850 0.8401 0.0004 24 1 0.6243 -2.5567 -0.8903 25 1 0.6249 -2.5570 0.8897 26 1 2.3964 -3.7516 -2.0518 27 1 3.5703 -2.8190 -1.3319 28 1 1.8803 -5.1602 2.2172 29 1 0.6575 -7.2873 2.4205 30 1 -0.6947 -9.2473 -0.4349 31 1 -2.6713 -9.3134 1.1534 32 1 -2.0622 -7.7786 1.9752 33 1 0.0958 -8.9621 2.5866 34 1 -0.5129 -10.4971 1.7653 35 1 0.9628 -5.0280 -1.9456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = 9.466331 kcal Electronic energy + Delta-G solvation = -17252.567920 eV Core-core repulsion = 14468.462280 eV Total energy + Delta-G solvation = -2784.105640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90102 -38.40870 -37.50644 -36.38612 -34.46226 -31.76575 -31.08107 -29.91205 -26.66900 -24.63502 -23.73650 -23.02620 -22.14485 -20.82069 -18.82651 -17.81694 -17.28811 -16.62128 -16.20002 -15.95826 -15.69251 -15.04280 -14.77334 -14.52094 -14.33463 -14.26328 -13.96602 -13.29409 -12.93041 -12.77371 -12.50048 -12.47245 -12.37705 -12.26645 -12.08913 -11.85739 -11.65632 -11.48304 -11.24118 -11.16059 -10.62330 -9.75813 -9.59130 -9.17898 -8.22575 -6.35081 0.21077 0.33175 1.17120 1.40061 1.40488 1.51484 2.37937 2.56845 3.10814 3.11650 3.54548 3.76100 3.83152 4.02773 4.10263 4.18200 4.23524 4.36871 4.50480 4.53438 4.76825 4.82616 4.86760 4.98473 5.00464 5.13792 5.26815 5.29136 5.37196 5.43386 5.48848 5.71672 5.74258 5.87195 6.13835 6.35756 6.67945 6.81423 7.35309 8.88505 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.004453 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.006528 B = 6287.088359 C = 6548.823545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.011 3.989 10 C 0.139 3.861 11 H 0.078 0.922 12 N -0.829 5.829 13 C -0.065 4.065 14 C -0.116 4.116 15 C -0.106 4.106 16 C -0.057 4.057 17 C -0.136 4.136 18 C -0.165 4.165 19 C -0.159 4.159 20 C -0.040 4.040 21 Cl -0.070 7.070 22 C -0.107 4.107 23 H 0.262 0.738 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.332 0.668 27 H 0.346 0.654 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 -17.541 1.966 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.086 0.914 9 C -0.027 4.027 10 C 0.028 3.972 11 H 0.096 0.904 12 N -0.357 5.357 13 C -0.066 4.066 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.057 4.057 17 C -0.154 4.154 18 C -0.202 4.202 19 C -0.196 4.196 20 C -0.066 4.066 21 Cl -0.041 7.041 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.144 0.856 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.175 0.825 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.075 -18.156 2.121 18.280 hybrid contribution -0.583 2.176 -0.633 2.340 sum -0.658 -15.980 1.489 16.062 Atomic orbital electron populations 1.70115 1.07936 1.27725 1.51404 1.25939 0.95600 1.03293 0.94644 0.85460 0.78717 0.78545 0.78393 1.19912 1.21260 1.18499 1.21558 0.93557 0.91609 1.50746 0.91435 1.19663 0.94559 0.93507 0.94987 1.20282 0.93449 0.89789 0.93703 0.90365 1.59274 1.27530 1.45547 1.03392 1.20013 0.97150 0.95842 0.93587 1.21318 0.99531 0.95477 0.97134 1.21186 0.97073 0.95262 0.98898 1.19169 0.98928 0.96356 0.91293 1.21017 1.02682 0.95037 0.96701 1.23087 0.92350 1.03068 1.01716 1.23192 0.99868 1.00172 0.96325 1.20752 1.01234 0.95885 0.88748 1.98320 1.81054 1.83539 1.41154 1.20794 0.97869 0.94522 0.99471 0.92879 0.99216 0.99305 0.85557 0.84030 0.84361 0.82463 0.86627 0.87050 0.89176 0.87623 0.86588 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.54 -28.90 8.55 25.60 0.22 -28.68 16 8 H 0.07 3.42 7.15 -2.91 -0.02 3.40 16 9 C 0.01 0.59 4.60 29.85 0.14 0.72 16 10 C 0.14 5.65 2.99 44.17 0.13 5.78 16 11 H 0.08 3.16 8.00 -2.39 -0.02 3.14 16 12 N -0.83 -30.71 9.02 -171.80 -1.55 -32.26 16 13 C -0.07 -2.37 4.96 -19.87 -0.10 -2.47 16 14 C -0.12 -3.62 9.67 22.27 0.22 -3.40 16 15 C -0.11 -2.79 9.30 22.27 0.21 -2.59 16 16 C -0.06 -1.54 5.61 -19.84 -0.11 -1.65 16 17 C -0.14 -2.89 5.56 -11.54 -0.06 -2.96 16 18 C -0.17 -2.93 10.16 30.60 0.31 -2.62 16 19 C -0.16 -2.46 9.86 30.60 0.30 -2.16 16 20 C -0.04 -1.23 6.31 22.32 0.14 -1.09 16 21 Cl -0.07 -1.92 27.41 -2.72 -0.07 -1.99 16 22 C -0.11 -3.76 9.08 22.29 0.20 -3.56 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.33 12.05 7.35 -89.70 -0.66 11.39 16 27 H 0.35 12.88 7.90 -89.69 -0.71 12.17 16 28 H 0.14 3.88 8.04 -2.91 -0.02 3.85 16 29 H 0.16 3.07 6.02 -2.91 -0.02 3.06 16 30 H 0.12 2.43 7.15 -2.39 -0.02 2.41 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.11 1.50 6.18 -2.39 -0.01 1.48 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 4.32 6.66 -2.91 -0.02 4.30 16 Total: -1.00 -62.11 306.15 2.49 -59.62 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.25 Total: 29.13 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 2.05 Total: -44.02 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -1.26 Total: -87.89 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.07 Total: -1.99 kcal Total: -62.11 2.49 -59.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.083 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds