Wall clock time and date at job start Mon Mar 30 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 111.05171 * 2 1 4 4 O 1.43963 * 111.19990 * 124.39531 * 2 1 3 5 5 C 1.35837 * 115.22185 * 147.02375 * 4 2 1 6 6 C 1.39946 * 116.68419 * 337.64953 * 5 4 2 7 7 C 1.37740 * 122.06100 * 181.15094 * 6 5 4 8 8 C 1.38468 * 119.88148 * 359.29499 * 7 6 5 9 9 C 1.38219 * 119.15616 * 359.97438 * 8 7 6 10 10 C 1.37734 * 120.96614 * 0.35850 * 9 8 7 11 11 C 1.50700 * 119.49361 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47470 * 220.02036 * 11 10 9 13 13 N 1.46899 * 109.46802 * 340.01905 * 11 10 9 14 14 C 1.50697 * 109.47547 * 100.01784 * 11 10 9 15 15 H 1.08006 * 120.00016 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00368 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99614 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00113 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47199 * 60.00096 * 18 16 14 20 20 H 1.48507 * 109.47111 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47208 * 300.00103 * 18 16 14 22 22 S 1.77805 * 105.47445 * 1.75113 * 6 5 4 23 23 H 1.09002 * 109.47153 * 59.29866 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.30057 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.30039 * 1 2 3 26 26 H 1.08998 * 109.47252 * 60.70240 * 3 2 1 27 27 H 1.09005 * 109.47131 * 180.70506 * 3 2 1 28 28 H 1.09000 * 109.47064 * 300.69736 * 3 2 1 29 29 H 1.08001 * 120.05614 * 179.26588 * 7 6 5 30 30 H 1.08001 * 120.41860 * 179.97438 * 8 7 6 31 31 H 1.08000 * 119.51949 * 180.34070 * 9 8 7 32 32 H 1.00905 * 111.00061 * 60.00679 * 13 11 10 33 33 H 1.00905 * 111.00180 * 183.95070 * 13 11 10 34 34 H 0.97005 * 119.99418 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0796 1.4278 0.0000 4 8 2.0506 -0.7582 1.1075 5 6 3.2210 -1.4044 0.8674 6 6 3.5283 -1.6712 -0.4716 7 6 4.6745 -2.3408 -0.8393 8 6 5.5705 -2.7587 0.1303 9 6 5.2967 -2.4940 1.4590 10 6 4.1473 -1.8305 1.8273 11 6 3.8823 -1.5589 3.2857 12 1 2.8248 -1.7155 3.4982 13 7 4.6875 -2.4719 4.1079 14 6 4.2535 -0.1341 3.6069 15 1 4.6421 0.5105 2.8323 16 6 4.0962 0.3470 4.8895 17 7 3.6226 -0.4378 5.8326 18 14 4.5557 2.1133 5.2874 19 1 3.7418 3.0359 4.4558 20 1 4.2947 2.3809 6.7246 21 1 5.9965 2.3271 4.9983 22 16 2.1945 -0.9679 -1.4137 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 0.5029 0.8962 25 1 -0.3634 -1.0276 -0.0125 26 1 1.7408 1.9476 0.8962 27 1 3.1691 1.3978 -0.0126 28 1 1.7205 1.9554 -0.8837 29 1 4.8738 -2.5399 -1.8819 30 1 6.4716 -3.2847 -0.1482 31 1 5.9942 -2.8124 2.2197 32 1 5.6725 -2.3460 3.9292 33 1 4.4800 -2.3538 5.0883 34 1 3.5122 -0.0994 6.7350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260424465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:56 Heat of formation + Delta-G solvation = -2.050817 kcal Electronic energy + Delta-G solvation = -18289.729535 eV Core-core repulsion = 15507.168180 eV Total energy + Delta-G solvation = -2782.561355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94695 -37.51388 -34.72531 -33.00666 -31.68362 -29.51277 -29.05752 -27.45106 -26.02660 -23.60425 -22.62447 -21.11651 -20.05824 -17.93449 -16.57381 -16.12001 -15.61639 -15.54617 -15.00831 -14.64870 -14.13470 -13.92999 -13.17407 -12.96105 -12.53271 -12.43056 -12.35247 -12.19870 -12.08335 -11.75794 -11.67295 -11.17851 -11.04822 -10.97670 -10.71037 -10.42255 -10.13914 -9.93083 -9.57413 -9.21947 -8.67077 -7.78200 -7.24864 -7.10659 -6.09821 -4.25293 1.43192 1.77305 1.89984 2.26603 3.21624 3.27059 3.29671 3.32316 4.19482 4.35864 4.72099 4.79544 5.05058 5.14565 5.44839 5.51227 5.59843 5.65865 5.73936 5.74561 5.95321 6.02570 6.03170 6.22843 6.37950 6.45752 6.70749 6.86443 7.02470 7.23478 7.56526 7.72385 7.78860 8.05972 8.64712 8.89199 9.07368 9.44806 10.88483 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.008344 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.144193 B = 3354.945945 C = 4264.402657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.160 3.840 3 C -0.157 4.157 4 O -0.276 6.276 5 C 0.098 3.902 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.136 4.136 9 C -0.082 4.082 10 C -0.029 4.029 11 C 0.245 3.755 12 H 0.053 0.947 13 N -0.851 5.851 14 C -0.535 4.535 15 H 0.052 0.948 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 S -0.206 6.206 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.311 0.689 33 H 0.357 0.643 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 0.175 -10.870 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 C -0.217 4.217 4 O -0.190 6.190 5 C 0.048 3.952 6 C -0.255 4.255 7 C -0.105 4.105 8 C -0.156 4.156 9 C -0.101 4.101 10 C -0.032 4.032 11 C 0.135 3.865 12 H 0.071 0.929 13 N -0.381 5.381 14 C -0.575 4.575 15 H 0.070 0.930 16 C -0.135 4.135 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.035 5.965 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.174 0.826 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.667 -0.488 -12.143 12.442 hybrid contribution 1.087 2.058 1.620 2.835 sum -1.580 1.570 -10.524 10.757 Atomic orbital electron populations 1.21833 0.89101 1.04442 1.03705 1.25209 0.97970 0.93272 0.82212 1.22389 1.02710 0.93103 1.03475 1.86427 1.34160 1.61190 1.37228 1.19663 0.86611 0.96545 0.92400 1.22107 1.00129 1.09967 0.93308 1.19869 0.91891 0.99437 0.99325 1.21024 0.99485 1.02309 0.92791 1.20773 0.96526 0.97129 0.95713 1.20028 0.90333 0.95684 0.97151 1.17882 0.95352 0.90121 0.83188 0.92906 1.59590 1.08246 1.56594 1.13700 1.21645 1.43674 0.97270 0.94877 0.92973 1.24981 0.94433 0.97802 0.96288 1.69730 1.45247 1.35941 1.02314 0.86597 0.78993 0.84819 0.77257 1.20204 1.21143 1.20235 1.86266 1.32381 1.57118 1.20761 0.90012 0.89614 0.90435 0.89861 0.91135 0.90395 0.86193 0.85595 0.84651 0.87928 0.82617 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.17 37.16 0.34 -1.36 16 2 C 0.16 2.66 1.50 -26.73 -0.04 2.62 16 3 C -0.16 -2.37 9.14 37.16 0.34 -2.03 16 4 O -0.28 -5.86 9.88 -19.23 -0.19 -6.05 16 5 C 0.10 2.12 6.63 -38.27 -0.25 1.87 16 6 C -0.14 -2.72 6.62 -39.12 -0.26 -2.98 16 7 C -0.08 -1.39 10.04 -39.68 -0.40 -1.78 16 8 C -0.14 -2.22 10.11 -39.50 -0.40 -2.62 16 9 C -0.08 -1.57 9.18 -39.77 -0.37 -1.93 16 10 C -0.03 -0.65 5.06 -104.13 -0.53 -1.18 16 11 C 0.24 6.17 2.78 -70.02 -0.19 5.98 16 12 H 0.05 1.52 8.10 -51.93 -0.42 1.10 16 13 N -0.85 -20.00 8.64 -6.65 -0.06 -20.06 16 14 C -0.53 -14.36 8.70 -34.44 -0.30 -14.66 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.07 1.80 5.38 -17.82 -0.10 1.71 16 17 N -0.89 -24.50 11.54 55.43 0.64 -23.86 16 18 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 S -0.21 -3.46 22.37 -107.50 -2.40 -5.87 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 2.44 6.13 -52.49 -0.32 2.12 16 32 H 0.31 6.79 7.23 -39.29 -0.28 6.51 16 33 H 0.36 9.01 7.08 -39.29 -0.28 8.73 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 297.16 15.07 4.48 4.48 Total: -1.00 -28.84 297.16 -8.94 -37.78 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.23 Total: 14.10 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.15 Total: -16.38 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.58 Total: -43.92 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.19 Total: -6.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.40 Total: -5.87 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.84 -8.94 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds