Wall clock time and date at job start Mon Mar 30 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 111.05171 * 2 1 4 4 O 1.43963 * 111.19990 * 124.39531 * 2 1 3 5 5 C 1.35837 * 115.22185 * 147.02375 * 4 2 1 6 6 C 1.39946 * 116.68419 * 337.64953 * 5 4 2 7 7 C 1.37740 * 122.06100 * 181.15094 * 6 5 4 8 8 C 1.38468 * 119.88148 * 359.29499 * 7 6 5 9 9 C 1.38219 * 119.15616 * 359.97438 * 8 7 6 10 10 C 1.37734 * 120.96614 * 0.35850 * 9 8 7 11 11 C 1.50700 * 119.49361 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47470 * 220.02036 * 11 10 9 13 13 N 1.46899 * 109.46802 * 340.01905 * 11 10 9 14 14 C 1.50697 * 109.47547 * 100.01784 * 11 10 9 15 15 H 1.08006 * 120.00016 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00368 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99614 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00113 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47199 * 60.00096 * 18 16 14 20 20 H 1.48507 * 109.47111 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47208 * 300.00103 * 18 16 14 22 22 S 1.77805 * 105.47445 * 1.75113 * 6 5 4 23 23 H 1.09002 * 109.47153 * 59.29866 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.30057 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.30039 * 1 2 3 26 26 H 1.08998 * 109.47252 * 60.70240 * 3 2 1 27 27 H 1.09005 * 109.47131 * 180.70506 * 3 2 1 28 28 H 1.09000 * 109.47064 * 300.69736 * 3 2 1 29 29 H 1.08001 * 120.05614 * 179.26588 * 7 6 5 30 30 H 1.08001 * 120.41860 * 179.97438 * 8 7 6 31 31 H 1.08000 * 119.51949 * 180.34070 * 9 8 7 32 32 H 1.00905 * 111.00061 * 60.00679 * 13 11 10 33 33 H 1.00905 * 111.00180 * 183.95070 * 13 11 10 34 34 H 0.97005 * 119.99418 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0796 1.4278 0.0000 4 8 2.0506 -0.7582 1.1075 5 6 3.2210 -1.4044 0.8674 6 6 3.5283 -1.6712 -0.4716 7 6 4.6745 -2.3408 -0.8393 8 6 5.5705 -2.7587 0.1303 9 6 5.2967 -2.4940 1.4590 10 6 4.1473 -1.8305 1.8273 11 6 3.8823 -1.5589 3.2857 12 1 2.8248 -1.7155 3.4982 13 7 4.6875 -2.4719 4.1079 14 6 4.2535 -0.1341 3.6069 15 1 4.6421 0.5105 2.8323 16 6 4.0962 0.3470 4.8895 17 7 3.6226 -0.4378 5.8326 18 14 4.5557 2.1133 5.2874 19 1 3.7418 3.0359 4.4558 20 1 4.2947 2.3809 6.7246 21 1 5.9965 2.3271 4.9983 22 16 2.1945 -0.9679 -1.4137 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 0.5029 0.8962 25 1 -0.3634 -1.0276 -0.0125 26 1 1.7408 1.9476 0.8962 27 1 3.1691 1.3978 -0.0126 28 1 1.7205 1.9554 -0.8837 29 1 4.8738 -2.5399 -1.8819 30 1 6.4716 -3.2847 -0.1482 31 1 5.9942 -2.8124 2.2197 32 1 5.6725 -2.3460 3.9292 33 1 4.4800 -2.3538 5.0883 34 1 3.5122 -0.0994 6.7350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260424465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:56 Heat of formation + Delta-G solvation = -20.135246 kcal Electronic energy + Delta-G solvation = -18290.513734 eV Core-core repulsion = 15507.168180 eV Total energy + Delta-G solvation = -2783.345554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.40369 -38.97269 -36.57640 -34.25410 -33.62432 -31.00195 -30.66825 -28.57441 -28.00204 -25.21655 -24.11357 -22.59244 -21.60243 -19.38564 -18.62761 -17.59537 -17.07640 -16.93462 -16.64465 -16.27017 -15.71811 -15.39670 -14.79352 -14.47263 -14.03425 -13.95199 -13.80034 -13.44939 -13.40113 -13.12760 -13.10904 -12.92877 -12.81776 -12.60620 -12.28654 -12.05113 -11.97331 -11.38338 -11.23264 -10.78753 -10.58918 -9.39316 -9.14251 -8.47701 -8.12834 -6.37919 0.07634 0.37838 0.44003 0.87967 1.35254 1.35579 1.44185 1.99011 2.33919 2.78698 3.03980 3.53121 3.58777 3.67343 4.19937 4.28244 4.35545 4.45073 4.50274 4.52883 4.61922 4.65945 4.72427 4.90266 4.94907 5.06421 5.15008 5.32993 5.52210 5.61786 5.71569 5.82101 6.02470 6.26695 6.62234 6.87990 7.09276 7.36683 8.81929 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.008344 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.144193 B = 3354.945945 C = 4264.402657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.145 3.855 3 C -0.153 4.153 4 O -0.311 6.311 5 C 0.073 3.927 6 C -0.160 4.160 7 C -0.075 4.075 8 C -0.120 4.120 9 C -0.089 4.089 10 C -0.068 4.068 11 C 0.254 3.746 12 H 0.002 0.998 13 N -0.840 5.840 14 C -0.546 4.546 15 H 0.039 0.961 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.279 1.279 21 H -0.270 1.270 22 S -0.180 6.180 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.156 0.844 30 H 0.172 0.828 31 H 0.141 0.859 32 H 0.321 0.679 33 H 0.346 0.654 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 0.630 -12.939 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.001 4.001 3 C -0.212 4.212 4 O -0.226 6.226 5 C 0.023 3.977 6 C -0.273 4.273 7 C -0.098 4.098 8 C -0.139 4.139 9 C -0.109 4.109 10 C -0.071 4.071 11 C 0.144 3.856 12 H 0.020 0.980 13 N -0.370 5.370 14 C -0.586 4.586 15 H 0.058 0.942 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.195 1.195 22 S 0.061 5.939 23 H 0.134 0.866 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.132 0.868 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.159 0.841 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.909 -0.037 -14.230 14.358 hybrid contribution 0.829 1.880 2.193 3.005 sum -1.080 1.843 -12.037 12.225 Atomic orbital electron populations 1.21927 0.86538 1.04784 1.05495 1.25738 0.99904 0.93362 0.81064 1.22391 1.01168 0.92687 1.04981 1.86376 1.34404 1.61968 1.39860 1.19847 0.86906 0.97457 0.93518 1.22501 1.01563 1.10294 0.92893 1.20408 0.90640 0.97488 1.01244 1.21469 1.00540 1.00835 0.91083 1.20955 0.95531 0.96804 0.97605 1.19958 0.92722 0.98803 0.95587 1.17533 0.92636 0.89716 0.85737 0.97995 1.59528 1.08791 1.56016 1.12664 1.21789 1.43807 0.98174 0.94785 0.94233 1.25703 0.94333 1.01506 0.96123 1.69838 1.45731 1.37427 1.02525 0.85654 0.78849 0.80256 0.77147 1.20106 1.20459 1.19550 1.86000 1.31256 1.56803 1.19868 0.86643 0.89248 0.90885 0.90288 0.93473 0.86820 0.82671 0.81070 0.84096 0.86783 0.83892 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.17 71.98 0.66 -2.52 16 2 C 0.15 4.76 1.50 30.59 0.05 4.81 16 3 C -0.15 -4.51 9.14 71.98 0.66 -3.85 16 4 O -0.31 -13.69 9.88 -91.72 -0.91 -14.60 16 5 C 0.07 3.22 6.63 23.12 0.15 3.37 16 6 C -0.16 -5.94 6.62 22.57 0.15 -5.79 16 7 C -0.07 -2.31 10.04 22.21 0.22 -2.08 16 8 C -0.12 -3.55 10.11 22.32 0.23 -3.33 16 9 C -0.09 -3.36 9.18 22.15 0.20 -3.16 16 10 C -0.07 -3.13 5.06 -19.55 -0.10 -3.23 16 11 C 0.25 13.46 2.78 43.42 0.12 13.58 16 12 H 0.00 0.13 8.10 -2.39 -0.02 0.11 16 13 N -0.84 -40.88 8.64 -174.96 -1.51 -42.39 16 14 C -0.55 -30.35 8.70 25.60 0.22 -30.13 16 15 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 16 C 0.02 1.28 5.38 84.65 0.46 1.74 16 17 N -0.92 -51.58 11.54 21.45 0.25 -51.33 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 S -0.18 -5.76 22.37 -56.49 -1.26 -7.03 16 23 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.14 4.99 6.13 -2.91 -0.02 4.97 16 32 H 0.32 14.31 7.23 -89.69 -0.65 13.66 16 33 H 0.35 18.12 7.08 -89.69 -0.63 17.49 16 34 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -65.03 297.16 1.45 -63.57 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -0.16 Total: 37.03 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.02 Total: -30.59 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -1.26 Total: -93.72 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.91 Total: -14.60 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -1.26 Total: -7.03 kcal Total: -65.03 1.45 -63.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260424465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.438 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds