Wall clock time and date at job start Mon Mar 30 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46220 * 60.00140 * 9 7 2 11 11 C 1.38232 * 120.00331 * 239.71717 * 10 9 7 12 12 C 1.38227 * 120.01251 * 179.74797 * 11 10 9 13 13 C 1.38263 * 120.02234 * 0.55202 * 12 11 10 14 14 C 1.38194 * 120.01244 * 359.70616 * 13 12 11 15 15 C 1.38326 * 120.00668 * 59.99740 * 10 9 7 16 16 Cl 1.73603 * 120.01586 * 0.02562 * 15 10 9 17 17 C 1.53038 * 109.45988 * 179.97438 * 9 7 2 18 18 C 1.53127 * 109.27751 * 60.83807 * 17 9 7 19 19 C 1.53118 * 109.16142 * 57.65652 * 18 17 9 20 20 C 1.53038 * 109.27305 * 302.34310 * 19 18 17 21 21 N 1.46825 * 109.51859 * 59.18466 * 20 19 18 22 22 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 23 23 H 1.08002 * 119.99738 * 0.02562 * 11 10 9 24 24 H 1.07998 * 119.98576 * 180.25886 * 12 11 10 25 25 H 1.08000 * 119.98805 * 179.72478 * 13 12 11 26 26 H 1.08003 * 120.00279 * 180.02562 * 14 13 12 27 27 H 1.08996 * 109.50608 * 180.77339 * 17 9 7 28 28 H 1.08997 * 109.50845 * 300.89871 * 17 9 7 29 29 H 1.09006 * 109.52030 * 177.56087 * 18 17 9 30 30 H 1.08994 * 109.51951 * 297.68130 * 18 17 9 31 31 H 1.08996 * 109.50420 * 62.27992 * 19 18 17 32 32 H 1.08994 * 109.50297 * 182.40892 * 19 18 17 33 33 H 1.09004 * 109.46270 * 179.19569 * 20 19 18 34 34 H 1.08992 * 109.46597 * 299.17510 * 20 19 18 35 35 H 1.00905 * 110.98295 * 174.15417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 0.3851 -2.5726 -1.2437 11 6 -0.9852 -2.7052 -1.1183 12 6 -1.7800 -2.7673 -2.2475 13 6 -1.2040 -2.7083 -3.5030 14 6 0.1663 -2.5812 -3.6296 15 6 0.9619 -2.5131 -2.4996 16 17 2.6834 -2.3546 -2.6579 17 6 2.2455 -3.6622 -0.0185 18 6 3.1094 -3.5953 1.2441 19 6 2.2018 -3.6350 2.4767 20 6 1.2085 -2.4727 2.4103 21 7 0.4060 -2.5825 1.1857 22 1 -0.4850 0.8401 0.0040 23 1 -1.4353 -2.7557 -0.1378 24 1 -2.8509 -2.8667 -2.1489 25 1 -1.8251 -2.7614 -4.3849 26 1 0.6160 -2.5347 -4.6105 27 1 1.7013 -4.6064 -0.0373 28 1 2.8830 -3.5914 -0.8997 29 1 3.7900 -4.4464 1.2652 30 1 3.6841 -2.6692 1.2434 31 1 1.6568 -4.5787 2.4970 32 1 2.8080 -3.5446 3.3779 33 1 0.5514 -2.5064 3.2794 34 1 1.7537 -1.5289 2.4037 35 1 -0.3202 -1.8821 1.1655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:58 Heat of formation + Delta-G solvation = 16.582289 kcal Electronic energy + Delta-G solvation = -19083.293848 eV Core-core repulsion = 16299.496779 eV Total energy + Delta-G solvation = -2783.797069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.01077 -37.01931 -35.36364 -32.89823 -31.09904 -30.69342 -29.63879 -28.08007 -25.23998 -22.87912 -22.34110 -21.12529 -20.13271 -18.55670 -16.54083 -16.15308 -15.06525 -14.61727 -14.36877 -14.13749 -13.43790 -12.99893 -12.94383 -12.77759 -12.38343 -12.09332 -11.85979 -11.65726 -11.36767 -10.96333 -10.78185 -10.62054 -10.55977 -10.34627 -10.17624 -9.99759 -9.86388 -9.41062 -9.13961 -8.85966 -8.56386 -7.86074 -7.52555 -7.02929 -6.00261 -4.14645 2.18711 2.35744 3.24658 3.27542 3.31931 3.36089 4.37052 4.70262 5.18253 5.52056 5.64009 5.78841 5.85384 5.89364 5.95564 6.08153 6.31610 6.41838 6.50567 6.56545 6.65621 6.69485 6.73744 6.88597 6.99544 7.02814 7.08578 7.15926 7.21886 7.29558 7.50469 7.62205 7.80729 7.84671 8.15087 8.60894 8.88430 9.02525 9.52010 10.93362 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.011751 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.075498 B = 2382.121411 C = 2814.801291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.265 3.735 10 C 0.015 3.985 11 C -0.076 4.076 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.129 4.129 15 C -0.026 4.026 16 Cl -0.076 7.076 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.109 4.109 20 C 0.072 3.928 21 N -0.687 5.687 22 H 0.264 0.736 23 H 0.128 0.872 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -5.192 -1.761 5.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.175 3.825 10 C 0.013 3.987 11 C -0.095 4.095 12 C -0.149 4.149 13 C -0.161 4.161 14 C -0.148 4.148 15 C -0.053 4.053 16 Cl -0.047 7.047 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.058 4.058 21 N -0.322 5.322 22 H 0.074 0.926 23 H 0.146 0.854 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.135 -5.729 -1.759 5.994 hybrid contribution 0.727 2.227 -0.147 2.347 sum 0.592 -3.502 -1.906 4.031 Atomic orbital electron populations 1.69693 1.05564 1.26955 1.50312 1.24908 0.94821 0.98857 0.94466 0.86746 0.79805 0.83474 0.78678 1.21450 1.20431 1.20147 1.21467 0.93322 0.89906 1.50667 0.92163 1.17371 0.87900 0.92577 0.84649 1.19969 0.93981 0.90839 0.93921 1.20890 0.92830 0.97523 0.98222 1.21059 0.99034 1.01835 0.92967 1.20692 0.93865 1.04478 0.97084 1.20748 0.93662 1.03621 0.96788 1.20569 0.84026 1.06171 0.94504 1.98268 1.12847 1.96064 1.97537 1.21791 0.97677 0.97377 0.97797 1.21428 0.97341 1.00313 0.95360 1.21507 0.97315 0.99070 0.96817 1.21516 0.94818 0.96986 0.92489 1.60943 1.15010 1.54923 1.01306 0.92624 0.85378 0.87293 0.87130 0.86849 0.94276 0.91178 0.94426 0.91708 0.92925 0.93731 0.94024 0.94200 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.75 10.25 55.43 0.57 -22.18 16 2 C 0.07 1.83 5.23 -17.82 -0.09 1.74 16 3 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -12.65 3.98 -34.44 -0.14 -12.79 16 8 H 0.06 1.54 6.76 -52.49 -0.35 1.19 16 9 C 0.26 5.98 0.39 -133.91 -0.05 5.93 16 10 C 0.01 0.33 3.68 -104.59 -0.39 -0.06 16 11 C -0.08 -1.61 8.63 -39.59 -0.34 -1.95 16 12 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 13 C -0.14 -2.55 10.05 -39.59 -0.40 -2.95 16 14 C -0.13 -2.48 9.83 -39.55 -0.39 -2.87 16 15 C -0.03 -0.56 6.03 -39.50 -0.24 -0.79 16 16 Cl -0.08 -1.57 23.80 -51.86 -1.23 -2.80 16 17 C -0.11 -2.27 4.59 -26.65 -0.12 -2.39 16 18 C -0.11 -2.05 5.75 -26.60 -0.15 -2.20 16 19 C -0.11 -2.00 6.09 -26.65 -0.16 -2.16 16 20 C 0.07 1.48 6.30 -3.85 -0.02 1.46 16 21 N -0.69 -15.18 5.32 -102.37 -0.54 -15.72 16 22 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 23 H 0.13 2.72 6.37 -52.49 -0.33 2.39 16 24 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 25 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.11 1.91 8.06 -52.48 -0.42 1.48 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.46 4.96 -51.93 -0.26 1.20 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.32 6.74 -51.93 -0.35 0.97 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.91 6.98 -51.93 -0.36 0.55 16 35 H 0.36 8.41 5.58 -39.29 -0.22 8.19 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -25.40 281.40 -9.28 -34.68 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.40 Total: 7.86 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.89 Total: -21.85 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.02 Total: -37.91 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.23 Total: -2.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.40 -9.28 -34.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.266 kcal (2) G-P(sol) polarization free energy of solvation -25.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds