Wall clock time and date at job start Mon Mar 30 2020 06:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46220 * 60.00140 * 9 7 2 11 11 C 1.38232 * 120.00331 * 239.71717 * 10 9 7 12 12 C 1.38227 * 120.01251 * 179.74797 * 11 10 9 13 13 C 1.38263 * 120.02234 * 0.55202 * 12 11 10 14 14 C 1.38194 * 120.01244 * 359.70616 * 13 12 11 15 15 C 1.38326 * 120.00668 * 59.99740 * 10 9 7 16 16 Cl 1.73603 * 120.01586 * 0.02562 * 15 10 9 17 17 C 1.53038 * 109.45988 * 179.97438 * 9 7 2 18 18 C 1.53127 * 109.27751 * 60.83807 * 17 9 7 19 19 C 1.53118 * 109.16142 * 57.65652 * 18 17 9 20 20 C 1.53038 * 109.27305 * 302.34310 * 19 18 17 21 21 N 1.46825 * 109.51859 * 59.18466 * 20 19 18 22 22 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 23 23 H 1.08002 * 119.99738 * 0.02562 * 11 10 9 24 24 H 1.07998 * 119.98576 * 180.25886 * 12 11 10 25 25 H 1.08000 * 119.98805 * 179.72478 * 13 12 11 26 26 H 1.08003 * 120.00279 * 180.02562 * 14 13 12 27 27 H 1.08996 * 109.50608 * 180.77339 * 17 9 7 28 28 H 1.08997 * 109.50845 * 300.89871 * 17 9 7 29 29 H 1.09006 * 109.52030 * 177.56087 * 18 17 9 30 30 H 1.08994 * 109.51951 * 297.68130 * 18 17 9 31 31 H 1.08996 * 109.50420 * 62.27992 * 19 18 17 32 32 H 1.08994 * 109.50297 * 182.40892 * 19 18 17 33 33 H 1.09004 * 109.46270 * 179.19569 * 20 19 18 34 34 H 1.08992 * 109.46597 * 299.17510 * 20 19 18 35 35 H 1.00905 * 110.98295 * 174.15417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 0.3851 -2.5726 -1.2437 11 6 -0.9852 -2.7052 -1.1183 12 6 -1.7800 -2.7673 -2.2475 13 6 -1.2040 -2.7083 -3.5030 14 6 0.1663 -2.5812 -3.6296 15 6 0.9619 -2.5131 -2.4996 16 17 2.6834 -2.3546 -2.6579 17 6 2.2455 -3.6622 -0.0185 18 6 3.1094 -3.5953 1.2441 19 6 2.2018 -3.6350 2.4767 20 6 1.2085 -2.4727 2.4103 21 7 0.4060 -2.5825 1.1857 22 1 -0.4850 0.8401 0.0040 23 1 -1.4353 -2.7557 -0.1378 24 1 -2.8509 -2.8667 -2.1489 25 1 -1.8251 -2.7614 -4.3849 26 1 0.6160 -2.5347 -4.6105 27 1 1.7013 -4.6064 -0.0373 28 1 2.8830 -3.5914 -0.8997 29 1 3.7900 -4.4464 1.2652 30 1 3.6841 -2.6692 1.2434 31 1 1.6568 -4.5787 2.4970 32 1 2.8080 -3.5446 3.3779 33 1 0.5514 -2.5064 3.2794 34 1 1.7537 -1.5289 2.4037 35 1 -0.3202 -1.8821 1.1655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:58 Heat of formation + Delta-G solvation = 4.258932 kcal Electronic energy + Delta-G solvation = -19083.828228 eV Core-core repulsion = 16299.496779 eV Total energy + Delta-G solvation = -2784.331450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61245 -38.59130 -36.94559 -34.65954 -32.79043 -32.34652 -31.16374 -29.65548 -27.10312 -24.49938 -23.91559 -22.67750 -21.68870 -20.29683 -18.12056 -17.91452 -16.77616 -16.32868 -15.97372 -15.70525 -15.04321 -14.65655 -14.63039 -14.33800 -13.96704 -13.67138 -13.47177 -13.27244 -13.11564 -12.83703 -12.46866 -12.43787 -12.09283 -11.96785 -11.74081 -11.57923 -11.54196 -11.12459 -10.84007 -10.49230 -10.39276 -9.40317 -9.10369 -8.82509 -7.89271 -6.08357 0.64959 0.84495 1.36348 1.40167 1.44044 1.67435 2.44646 3.13466 3.27431 3.91755 4.24697 4.30431 4.31805 4.40006 4.46897 4.55847 4.78419 4.87941 4.90275 5.04283 5.09763 5.14262 5.20801 5.33285 5.41735 5.44397 5.47983 5.55804 5.67631 5.71429 5.84314 5.93087 6.03005 6.28726 6.34763 6.80376 7.03278 7.20248 7.58225 8.98044 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.011751 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.075498 B = 2382.121411 C = 2814.801291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.040 3.960 3 Si 0.920 3.080 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.044 0.956 9 C 0.262 3.738 10 C -0.012 4.012 11 C -0.094 4.094 12 C -0.130 4.130 13 C -0.135 4.135 14 C -0.134 4.134 15 C -0.050 4.050 16 Cl -0.080 7.080 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.102 4.102 20 C 0.069 3.931 21 N -0.685 5.685 22 H 0.258 0.742 23 H 0.119 0.881 24 H 0.139 0.861 25 H 0.150 0.850 26 H 0.136 0.864 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -6.015 -2.354 6.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.161 4.161 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.172 3.828 10 C -0.014 4.014 11 C -0.113 4.113 12 C -0.148 4.148 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.076 4.076 16 Cl -0.051 7.051 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.140 4.140 20 C -0.061 4.061 21 N -0.318 5.318 22 H 0.068 0.932 23 H 0.137 0.863 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.153 0.847 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.662 -6.560 -2.347 6.998 hybrid contribution 0.878 2.450 0.005 2.603 sum 0.216 -4.109 -2.342 4.735 Atomic orbital electron populations 1.69779 1.05810 1.26585 1.51352 1.25279 0.95348 1.00300 0.95164 0.86211 0.78927 0.81961 0.78087 1.21598 1.20531 1.20896 1.21511 0.92519 0.91054 1.49414 0.93806 1.17388 0.88218 0.92036 0.85159 1.20045 0.94651 0.92546 0.94109 1.20950 0.92759 0.98652 0.98898 1.21417 1.00426 1.00447 0.92540 1.21146 0.93690 1.02315 0.98167 1.21114 0.94322 1.02770 0.97080 1.20837 0.84277 1.07389 0.95145 1.98254 1.13144 1.96161 1.97515 1.21774 0.97536 0.96650 0.98654 1.21416 0.97469 1.00447 0.95006 1.21468 0.96870 0.98268 0.97417 1.21599 0.95239 0.96704 0.92525 1.60998 1.14869 1.54131 1.01764 0.93235 0.86283 0.84358 0.83232 0.84655 0.94394 0.91457 0.91941 0.93500 0.92067 0.91361 0.92587 0.97042 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.27 10.25 21.45 0.22 -46.05 16 2 C 0.04 2.04 5.23 84.66 0.44 2.48 16 3 Si 0.92 42.93 29.54 68.60 2.03 44.95 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.51 -25.08 3.98 25.60 0.10 -24.98 16 8 H 0.04 2.28 6.76 -2.91 -0.02 2.26 16 9 C 0.26 11.84 0.39 2.06 0.00 11.84 16 10 C -0.01 -0.53 3.68 -19.84 -0.07 -0.60 16 11 C -0.09 -3.91 8.63 22.27 0.19 -3.72 16 12 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 13 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 14 C -0.13 -4.84 9.83 22.29 0.22 -4.63 16 15 C -0.05 -2.09 6.03 22.32 0.13 -1.96 16 16 Cl -0.08 -3.25 23.80 -2.72 -0.06 -3.31 16 17 C -0.11 -4.47 4.59 30.65 0.14 -4.33 16 18 C -0.11 -3.93 5.75 30.68 0.18 -3.76 16 19 C -0.10 -3.57 6.09 30.65 0.19 -3.39 16 20 C 0.07 2.82 6.30 86.33 0.54 3.37 16 21 N -0.68 -30.23 5.32 -477.80 -2.54 -32.77 16 22 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 23 H 0.12 5.06 6.37 -2.91 -0.02 5.04 16 24 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 25 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 26 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 2.79 4.96 -2.39 -0.01 2.78 16 29 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.90 6.74 -2.39 -0.02 1.88 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.01 0.52 6.98 -2.39 -0.02 0.51 16 35 H 0.35 16.47 5.58 -89.69 -0.50 15.97 16 Total: -1.00 -53.62 281.40 2.75 -50.87 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.60 Total: 24.47 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 2.51 Total: -38.16 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.32 Total: -78.82 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.06 Total: -3.31 kcal Total: -53.62 2.75 -50.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.131 kcal (2) G-P(sol) polarization free energy of solvation -53.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds