Wall clock time and date at job start Mon Mar 30 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47245 * 264.84661 * 3 2 1 5 5 H 1.48499 * 109.46992 * 24.84946 * 3 2 1 6 6 H 1.48503 * 109.47251 * 144.84634 * 3 2 1 7 7 C 1.37886 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99672 * 6.60841 * 7 2 1 9 9 C 1.50700 * 119.99735 * 186.60118 * 7 2 1 10 10 H 1.08998 * 109.53902 * 335.06928 * 9 7 2 11 11 C 1.53119 * 109.50412 * 214.96301 * 9 7 2 12 12 C 1.53121 * 109.15993 * 297.71772 * 11 9 7 13 13 C 1.53032 * 109.27966 * 302.34465 * 12 11 9 14 14 H 1.09000 * 109.46345 * 299.16400 * 13 12 11 15 15 C 1.50709 * 109.46412 * 179.19272 * 13 12 11 16 16 C 1.38232 * 120.00720 * 264.67505 * 15 13 12 17 17 C 1.38223 * 120.01079 * 179.74715 * 16 15 13 18 18 C 1.38260 * 120.02502 * 0.54721 * 17 16 15 19 19 C 1.38194 * 120.01618 * 359.70150 * 18 17 16 20 20 C 1.38335 * 120.00172 * 84.94452 * 15 13 12 21 21 Cl 1.73593 * 120.01417 * 0.02562 * 20 15 13 22 22 N 1.46850 * 109.52291 * 59.18379 * 13 12 11 23 23 C 1.46850 * 111.19352 * 298.25395 * 22 13 12 24 24 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.52060 * 57.62058 * 11 9 7 26 26 H 1.08997 * 109.52349 * 177.75096 * 11 9 7 27 27 H 1.09002 * 109.50115 * 62.28862 * 12 11 9 28 28 H 1.08999 * 109.50384 * 182.39948 * 12 11 9 29 29 H 1.08000 * 119.99439 * 359.97438 * 16 15 13 30 30 H 1.07994 * 119.98619 * 180.25233 * 17 16 15 31 31 H 1.08004 * 119.99381 * 179.72766 * 18 17 16 32 32 H 1.07999 * 120.00925 * 180.02562 * 19 18 17 33 33 H 1.00901 * 110.99802 * 174.16435 * 22 13 12 34 34 H 1.08998 * 109.45813 * 181.76403 * 23 22 13 35 35 H 1.08998 * 109.46278 * 301.73840 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6056 1.9835 -1.3944 5 1 1.3964 2.6816 0.5884 6 1 3.4880 1.4740 0.8061 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1086 9 6 3.5040 -1.1985 0.1495 10 1 3.9072 -0.2445 -0.1904 11 6 4.0985 -2.3329 -0.6897 12 6 3.5736 -3.6730 -0.1669 13 6 3.9372 -3.8155 1.3127 14 1 5.0213 -3.7935 1.4241 15 6 3.4053 -5.1246 1.8367 16 6 2.1823 -5.1661 2.4798 17 6 1.6920 -6.3676 2.9558 18 6 2.4293 -7.5266 2.7990 19 6 3.6544 -7.4855 2.1608 20 6 4.1433 -6.2840 1.6791 21 17 5.6826 -6.2313 0.8784 22 7 3.3447 -2.7074 2.0726 23 6 3.8696 -1.4128 1.6201 24 1 -0.4850 0.8401 0.0004 25 1 3.8041 -2.2079 -1.7317 26 1 5.1856 -2.3115 -0.6131 27 1 2.4901 -3.7087 -0.2806 28 1 4.0264 -4.4870 -0.7330 29 1 1.6083 -4.2602 2.6071 30 1 0.7346 -6.4002 3.4545 31 1 2.0477 -8.4643 3.1751 32 1 4.2301 -8.3910 2.0381 33 1 3.4901 -2.8301 3.0636 34 1 3.4358 -0.6145 2.2223 35 1 4.9540 -1.4021 1.7298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260547421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:49 Heat of formation + Delta-G solvation = 13.422334 kcal Electronic energy + Delta-G solvation = -18096.656063 eV Core-core repulsion = 15312.721968 eV Total energy + Delta-G solvation = -2783.934095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60204 -37.57225 -36.30540 -33.20837 -31.55327 -31.17015 -30.49963 -28.75212 -24.94108 -23.43117 -22.46738 -22.12965 -20.53265 -18.52731 -17.10072 -16.48285 -15.81526 -15.41257 -14.77554 -14.10935 -13.72172 -13.63400 -13.53827 -13.13704 -12.80038 -12.51373 -12.20196 -12.10342 -12.04191 -11.44545 -11.28684 -11.27252 -10.87444 -10.78097 -10.41542 -10.23372 -9.68987 -9.56808 -9.21609 -8.92940 -8.71343 -8.49484 -8.35050 -7.56140 -5.92562 -3.86548 1.28520 1.43713 2.26690 3.33758 3.42330 3.42967 3.78500 4.51887 4.65170 4.89592 5.06970 5.17898 5.35617 5.42644 5.56455 5.70178 5.75087 5.87651 6.00411 6.13413 6.18729 6.28063 6.32543 6.41557 6.50751 6.60611 6.67014 6.71230 6.86026 6.99899 7.03341 7.16741 7.39357 7.79639 7.94790 8.13155 8.72225 9.18182 9.71242 11.21253 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.006064 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.696676 B = 4616.577356 C = 5209.328412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.871 3.129 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.475 4.475 8 H 0.079 0.921 9 C 0.009 3.991 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.095 4.095 13 C 0.131 3.869 14 H 0.041 0.959 15 C -0.063 4.063 16 C -0.081 4.081 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.035 4.035 21 Cl -0.077 7.077 22 N -0.659 5.659 23 C 0.073 3.927 24 H 0.259 0.741 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.152 0.848 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.324 0.676 34 H 0.064 0.936 35 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -12.794 5.418 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.513 4.513 8 H 0.097 0.903 9 C -0.011 4.011 10 H 0.051 0.949 11 C -0.141 4.141 12 C -0.132 4.132 13 C 0.021 3.979 14 H 0.059 0.941 15 C -0.064 4.064 16 C -0.099 4.099 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.138 4.138 20 C -0.062 4.062 21 Cl -0.048 7.048 22 N -0.289 5.289 23 C -0.056 4.056 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 7.629 -12.611 4.935 15.544 hybrid contribution 1.417 0.900 0.352 1.715 sum 9.046 -11.711 5.287 15.714 Atomic orbital electron populations 1.69910 1.06124 1.26363 1.52077 1.25053 0.94630 0.98480 0.95382 0.86979 0.80029 0.84596 0.78412 1.20575 1.21934 1.19500 1.20860 0.88672 0.94359 1.47380 0.90292 1.19286 0.97981 0.93802 0.89999 0.94906 1.21540 0.96798 0.95698 1.00094 1.21472 1.03018 0.96900 0.91857 1.20349 0.95178 0.86937 0.95404 0.94138 1.19942 0.94695 0.94100 0.97673 1.21336 0.94432 0.99032 0.95121 1.21330 0.99959 0.92638 0.99869 1.21043 0.94338 0.98647 0.99704 1.20914 0.96899 0.96200 0.99750 1.20825 0.88772 0.95175 1.01468 1.98345 1.29019 1.98697 1.78715 1.60104 1.61608 1.01274 1.05896 1.22190 0.93095 0.89842 1.00484 0.93081 0.92321 0.95072 0.89953 0.93448 0.83069 0.85615 0.85699 0.85533 0.85892 0.91712 0.98510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 3 Si 0.87 21.41 27.04 -169.99 -4.60 16.81 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.27 -6.31 6.75 56.52 0.38 -5.93 16 7 C -0.47 -12.82 8.15 -34.44 -0.28 -13.10 16 8 H 0.08 2.34 6.47 -52.49 -0.34 2.00 16 9 C 0.01 0.20 2.29 -91.69 -0.21 -0.01 16 10 H 0.03 0.77 5.22 -51.93 -0.27 0.50 16 11 C -0.10 -2.09 5.50 -26.61 -0.15 -2.24 16 12 C -0.09 -1.80 5.10 -26.65 -0.14 -1.94 16 13 C 0.13 2.28 2.15 -68.87 -0.15 2.13 16 14 H 0.04 0.71 7.12 -51.93 -0.37 0.34 16 15 C -0.06 -0.99 4.98 -104.58 -0.52 -1.51 16 16 C -0.08 -1.22 9.21 -39.59 -0.36 -1.59 16 17 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 18 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 19 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 20 C -0.04 -0.51 6.31 -39.49 -0.25 -0.75 16 21 Cl -0.08 -1.05 27.16 -51.86 -1.41 -2.45 16 22 N -0.66 -12.36 4.91 -107.98 -0.53 -12.89 16 23 C 0.07 1.50 5.98 -3.83 -0.02 1.48 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.79 6.48 -51.93 -0.34 1.45 16 28 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 29 H 0.15 2.50 7.25 -52.49 -0.38 2.12 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.32 5.35 8.63 -39.29 -0.34 5.01 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -29.32 293.22 -9.26 -38.58 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.56 Total: 3.55 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.36 Total: -21.29 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.24 Total: -39.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.60 Total: 16.81 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.41 Total: -2.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.32 -9.26 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.003 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds