Wall clock time and date at job start Mon Mar 30 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47245 * 264.84661 * 3 2 1 5 5 H 1.48499 * 109.46992 * 24.84946 * 3 2 1 6 6 H 1.48503 * 109.47251 * 144.84634 * 3 2 1 7 7 C 1.37886 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99672 * 6.60841 * 7 2 1 9 9 C 1.50700 * 119.99735 * 186.60118 * 7 2 1 10 10 H 1.08998 * 109.53902 * 335.06928 * 9 7 2 11 11 C 1.53119 * 109.50412 * 214.96301 * 9 7 2 12 12 C 1.53121 * 109.15993 * 297.71772 * 11 9 7 13 13 C 1.53032 * 109.27966 * 302.34465 * 12 11 9 14 14 H 1.09000 * 109.46345 * 299.16400 * 13 12 11 15 15 C 1.50709 * 109.46412 * 179.19272 * 13 12 11 16 16 C 1.38232 * 120.00720 * 264.67505 * 15 13 12 17 17 C 1.38223 * 120.01079 * 179.74715 * 16 15 13 18 18 C 1.38260 * 120.02502 * 0.54721 * 17 16 15 19 19 C 1.38194 * 120.01618 * 359.70150 * 18 17 16 20 20 C 1.38335 * 120.00172 * 84.94452 * 15 13 12 21 21 Cl 1.73593 * 120.01417 * 0.02562 * 20 15 13 22 22 N 1.46850 * 109.52291 * 59.18379 * 13 12 11 23 23 C 1.46850 * 111.19352 * 298.25395 * 22 13 12 24 24 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.52060 * 57.62058 * 11 9 7 26 26 H 1.08997 * 109.52349 * 177.75096 * 11 9 7 27 27 H 1.09002 * 109.50115 * 62.28862 * 12 11 9 28 28 H 1.08999 * 109.50384 * 182.39948 * 12 11 9 29 29 H 1.08000 * 119.99439 * 359.97438 * 16 15 13 30 30 H 1.07994 * 119.98619 * 180.25233 * 17 16 15 31 31 H 1.08004 * 119.99381 * 179.72766 * 18 17 16 32 32 H 1.07999 * 120.00925 * 180.02562 * 19 18 17 33 33 H 1.00901 * 110.99802 * 174.16435 * 22 13 12 34 34 H 1.08998 * 109.45813 * 181.76403 * 23 22 13 35 35 H 1.08998 * 109.46278 * 301.73840 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6056 1.9835 -1.3944 5 1 1.3964 2.6816 0.5884 6 1 3.4880 1.4740 0.8061 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1086 9 6 3.5040 -1.1985 0.1495 10 1 3.9072 -0.2445 -0.1904 11 6 4.0985 -2.3329 -0.6897 12 6 3.5736 -3.6730 -0.1669 13 6 3.9372 -3.8155 1.3127 14 1 5.0213 -3.7935 1.4241 15 6 3.4053 -5.1246 1.8367 16 6 2.1823 -5.1661 2.4798 17 6 1.6920 -6.3676 2.9558 18 6 2.4293 -7.5266 2.7990 19 6 3.6544 -7.4855 2.1608 20 6 4.1433 -6.2840 1.6791 21 17 5.6826 -6.2313 0.8784 22 7 3.3447 -2.7074 2.0726 23 6 3.8696 -1.4128 1.6201 24 1 -0.4850 0.8401 0.0004 25 1 3.8041 -2.2079 -1.7317 26 1 5.1856 -2.3115 -0.6131 27 1 2.4901 -3.7087 -0.2806 28 1 4.0264 -4.4870 -0.7330 29 1 1.6083 -4.2602 2.6071 30 1 0.7346 -6.4002 3.4545 31 1 2.0477 -8.4643 3.1751 32 1 4.2301 -8.3910 2.0381 33 1 3.4901 -2.8301 3.0636 34 1 3.4358 -0.6145 2.2223 35 1 4.9540 -1.4021 1.7298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260547421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:48 Heat of formation + Delta-G solvation = -3.643238 kcal Electronic energy + Delta-G solvation = -18097.396082 eV Core-core repulsion = 15312.721968 eV Total energy + Delta-G solvation = -2784.674114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80277 -39.00699 -37.35399 -34.97590 -33.31494 -32.68747 -31.55516 -30.20752 -26.80269 -24.88286 -23.91289 -23.31921 -21.84726 -20.34451 -18.49306 -18.18443 -17.18456 -16.57915 -16.07023 -15.97397 -15.14975 -14.87113 -14.65691 -14.56174 -14.53903 -14.21715 -13.88056 -13.67572 -13.40702 -12.82324 -12.67789 -12.41847 -12.33725 -12.23581 -11.97915 -11.67741 -11.59484 -11.23010 -10.98129 -10.85748 -10.48575 -9.77458 -9.56241 -9.04639 -8.11497 -6.08721 0.24716 0.40059 1.20998 1.39027 1.40024 1.49391 2.44832 2.74536 3.20274 3.33595 3.75465 4.03559 4.16236 4.21801 4.27652 4.36035 4.46733 4.52642 4.61459 4.75630 4.76415 4.80393 4.90497 5.01755 5.11257 5.21474 5.29006 5.34276 5.44745 5.53489 5.58465 5.69090 5.86654 5.96501 6.32451 6.56054 6.73285 6.97310 7.51885 9.05705 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.006064 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.696676 B = 4616.577356 C = 5209.328412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C 0.002 3.998 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.462 4.462 8 H 0.038 0.962 9 C 0.002 3.998 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.088 4.088 13 C 0.140 3.860 14 H 0.048 0.952 15 C -0.083 4.083 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.045 4.045 21 Cl -0.074 7.074 22 N -0.673 5.673 23 C 0.077 3.923 24 H 0.258 0.742 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.338 0.662 34 H 0.052 0.948 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 -14.227 6.263 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.193 4.193 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.500 4.500 8 H 0.056 0.944 9 C -0.017 4.017 10 H 0.051 0.949 11 C -0.141 4.141 12 C -0.126 4.126 13 C 0.030 3.970 14 H 0.066 0.934 15 C -0.084 4.084 16 C -0.119 4.119 17 C -0.138 4.138 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.072 4.072 21 Cl -0.045 7.045 22 N -0.305 5.305 23 C -0.052 4.052 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 9.743 -14.059 5.789 18.058 hybrid contribution 0.727 1.184 0.092 1.392 sum 10.470 -12.875 5.881 17.606 Atomic orbital electron populations 1.70078 1.08084 1.27122 1.54720 1.25859 0.95321 1.02391 0.95713 0.85930 0.79337 0.79741 0.78891 1.19928 1.22359 1.17073 1.21026 0.90978 0.92600 1.45422 0.94377 1.19331 0.95068 0.94993 0.92357 0.94858 1.21505 0.98282 0.95199 0.99101 1.21362 1.00584 0.96906 0.93762 1.20217 0.95398 0.87454 0.93936 0.93422 1.19795 0.95476 0.93846 0.99270 1.21219 0.94558 0.99393 0.96720 1.21583 1.00853 0.92099 0.99255 1.21462 0.93490 0.99486 0.98069 1.21290 0.97269 0.96277 0.98584 1.20941 0.88924 0.95399 1.01925 1.98342 1.28756 1.98704 1.78716 1.59994 1.62316 1.01146 1.07050 1.21983 0.94518 0.90483 0.98255 0.93332 0.93187 0.92320 0.93672 0.91832 0.85625 0.83645 0.81992 0.82937 0.84387 0.92970 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.00 0.10 5.47 84.66 0.46 0.56 16 3 Si 0.94 44.49 27.04 68.60 1.85 46.35 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.74 6.75 99.48 0.67 -10.06 16 7 C -0.46 -25.73 8.15 25.60 0.21 -25.52 16 8 H 0.04 2.40 6.47 -2.91 -0.02 2.38 16 9 C 0.00 0.08 2.29 -11.49 -0.03 0.05 16 10 H 0.03 1.50 5.22 -2.39 -0.01 1.49 16 11 C -0.10 -4.09 5.50 30.67 0.17 -3.92 16 12 C -0.09 -3.37 5.10 30.65 0.16 -3.21 16 13 C 0.14 4.77 2.15 44.19 0.10 4.87 16 14 H 0.05 1.57 7.12 -2.39 -0.02 1.55 16 15 C -0.08 -2.54 4.98 -19.84 -0.10 -2.64 16 16 C -0.10 -3.03 9.21 22.26 0.21 -2.83 16 17 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 18 C -0.11 -2.05 10.05 22.26 0.22 -1.83 16 19 C -0.12 -2.44 9.83 22.29 0.22 -2.23 16 20 C -0.04 -1.19 6.31 22.33 0.14 -1.05 16 21 Cl -0.07 -1.86 27.16 -2.72 -0.07 -1.93 16 22 N -0.67 -25.26 4.91 -495.54 -2.43 -27.69 16 23 C 0.08 3.09 5.98 86.33 0.52 3.61 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 2.05 6.48 -2.39 -0.02 2.03 16 28 H 0.06 2.18 7.90 -2.39 -0.02 2.16 16 29 H 0.13 4.38 7.25 -2.91 -0.02 4.36 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.34 11.07 8.63 -89.69 -0.77 10.29 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.27 293.22 2.43 -62.84 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.29 Total: 17.35 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 2.49 Total: -36.70 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.13 Total: -87.90 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.85 Total: 46.35 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.07 Total: -1.93 kcal Total: -65.27 2.43 -62.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.192 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds