Wall clock time and date at job start Mon Mar 30 2020 07:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37861 * 119.77220 * 2 1 4 4 C 1.38254 * 119.96578 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.87073 * 0.13934 * 4 3 2 6 6 Cl 1.73605 * 119.76932 * 180.02562 * 5 4 3 7 7 C 1.38682 * 120.46071 * 0.02562 * 5 4 3 8 8 C 1.38398 * 119.85842 * 359.72186 * 7 5 4 9 9 N 1.39406 * 122.94876 * 180.48337 * 8 7 5 10 10 C 1.46897 * 110.99955 * 105.34822 * 9 8 7 11 11 C 1.46422 * 113.13812 * 339.79464 * 9 8 7 12 12 C 1.53383 * 108.67258 * 53.34865 * 11 9 8 13 13 H 1.08992 * 109.76954 * 51.43447 * 12 11 9 14 14 C 1.50697 * 109.76552 * 172.16808 * 12 11 9 15 15 H 1.08002 * 120.00599 * 359.26622 * 14 12 11 16 16 C 1.37880 * 119.99675 * 179.26155 * 14 12 11 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.50834 * 118.11214 * 179.42758 * 7 5 4 23 23 H 1.09003 * 109.46594 * 269.97561 * 1 2 3 24 24 H 1.08998 * 109.47401 * 29.97691 * 1 2 3 25 25 H 1.09005 * 109.47045 * 149.98279 * 1 2 3 26 26 H 1.07994 * 120.02211 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.06343 * 180.12196 * 4 3 2 28 28 H 1.09008 * 109.47055 * 293.25955 * 10 9 8 29 29 H 1.08999 * 109.47459 * 53.25813 * 10 9 8 30 30 H 1.08996 * 109.47479 * 173.25767 * 10 9 8 31 31 H 1.09006 * 109.60183 * 293.59450 * 11 9 8 32 32 H 1.08997 * 109.73626 * 173.18846 * 11 9 8 33 33 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.49335 * 44.56257 * 22 7 5 35 35 H 1.08998 * 109.40267 * 284.66387 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1966 0.0000 4 6 3.5741 1.2013 -0.0005 5 6 4.2666 0.0051 -0.0040 6 17 6.0026 0.0140 -0.0040 7 6 3.5842 -1.2023 -0.0075 8 6 2.2003 -1.2115 -0.0016 9 7 1.4499 -2.3864 0.0052 10 6 0.8662 -2.6305 1.3309 11 6 2.2032 -3.5529 -0.4593 12 6 3.4982 -3.6577 0.3560 13 1 3.2678 -3.6182 1.4206 14 6 4.1998 -4.9520 0.0341 15 1 3.7627 -5.6420 -0.6725 16 6 5.3998 -5.2552 0.6416 17 7 6.0120 -6.3849 0.3611 18 14 6.1556 -4.0620 1.8641 19 1 7.0435 -3.1131 1.1453 20 1 5.0768 -3.3069 2.5506 21 1 6.9474 -4.8171 2.8680 22 6 4.3926 -2.4755 -0.0244 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6483 2.1300 -0.0004 27 1 4.1120 2.1378 0.0015 28 1 1.6623 -2.8397 2.0456 29 1 0.3123 -1.7484 1.6521 30 1 0.1909 -3.4845 1.2790 31 1 2.4447 -3.4353 -1.5157 32 1 1.6083 -4.4553 -0.3184 33 1 6.8560 -6.5983 0.7887 34 1 5.2119 -2.3958 0.6901 35 1 4.7978 -2.6339 -1.0238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:46 Heat of formation + Delta-G solvation = 21.209101 kcal Electronic energy + Delta-G solvation = -18536.829910 eV Core-core repulsion = 15753.233474 eV Total energy + Delta-G solvation = -2783.596435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41012 -37.03850 -36.13374 -34.28764 -32.48528 -30.76185 -30.18590 -27.30576 -25.95537 -25.16189 -23.54226 -21.71527 -20.58938 -18.85123 -17.14298 -16.57370 -15.79187 -15.19814 -14.63063 -14.30170 -13.95546 -13.89065 -13.50382 -13.13327 -12.93595 -12.59275 -12.53267 -12.29417 -12.02193 -11.59180 -11.44819 -11.15405 -10.98783 -10.84502 -10.69874 -10.47820 -10.33994 -10.10327 -9.68632 -9.15380 -8.72858 -8.61553 -8.18105 -7.52603 -6.15337 -4.16081 1.38086 1.53522 2.46097 3.25138 3.34156 3.35199 3.75918 4.27762 4.34789 4.96713 5.08320 5.10816 5.26228 5.40526 5.49210 5.62566 5.71909 5.75818 5.85726 5.91321 5.92812 5.99358 6.08185 6.21927 6.30501 6.42420 6.47442 6.52312 6.66136 6.77040 6.89678 6.95745 7.28331 7.32977 7.65507 7.76543 8.41621 8.87579 9.46830 10.97362 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.009576 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.296095 B = 2923.126214 C = 4062.099032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.091 4.091 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.032 4.032 6 Cl -0.077 7.077 7 C -0.092 4.092 8 C 0.126 3.874 9 N -0.502 5.502 10 C 0.025 3.975 11 C 0.069 3.931 12 C -0.014 4.014 13 H 0.032 0.968 14 C -0.513 4.513 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.896 5.896 18 Si 0.873 3.127 19 H -0.271 1.271 20 H -0.267 1.267 21 H -0.294 1.294 22 C -0.090 4.090 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.265 0.735 34 H 0.068 0.932 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 14.167 0.688 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.147 4.147 5 C -0.059 4.059 6 Cl -0.048 7.048 7 C -0.096 4.096 8 C 0.028 3.972 9 N -0.218 5.218 10 C -0.120 4.120 11 C -0.058 4.058 12 C -0.034 4.034 13 H 0.050 0.950 14 C -0.551 4.551 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.221 1.221 22 C -0.126 4.126 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.560 14.039 0.407 16.448 hybrid contribution 1.582 0.532 1.128 2.014 sum -6.978 14.571 1.534 16.229 Atomic orbital electron populations 1.20733 0.90816 1.03007 1.01683 1.19884 0.96407 0.91478 1.01501 1.20671 0.93106 0.97317 1.01931 1.20824 0.94251 0.96273 1.03335 1.20843 0.84084 0.94560 1.06426 1.98349 1.10743 1.98868 1.96880 1.20348 0.93634 0.95373 1.00199 1.18289 0.89129 0.90903 0.98851 1.58831 1.34752 1.02872 1.25310 1.22477 0.99261 1.01873 0.88403 1.22258 0.93934 0.90041 0.99529 1.19737 0.93187 0.94333 0.96150 0.94967 1.20855 1.05754 1.01892 1.26645 0.90374 1.24960 0.96731 0.94886 0.96017 1.69882 1.17072 1.23123 1.43252 0.87044 0.79866 0.81092 0.81769 1.19709 1.19224 1.22113 1.21267 0.97953 0.90681 1.02742 0.91823 0.92273 0.90065 0.85546 0.85564 0.94251 0.91486 0.90795 0.90791 0.90122 0.92520 0.91439 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 8.49 36.01 0.31 -0.90 16 2 C -0.09 -1.32 5.72 -104.26 -0.60 -1.92 16 3 C -0.11 -1.48 9.67 -39.71 -0.38 -1.86 16 4 C -0.13 -1.85 9.82 -39.58 -0.39 -2.24 16 5 C -0.03 -0.56 6.31 -39.42 -0.25 -0.81 16 6 Cl -0.08 -1.36 27.37 -51.86 -1.42 -2.78 16 7 C -0.09 -1.78 5.75 -104.33 -0.60 -2.38 16 8 C 0.13 2.20 5.12 -83.85 -0.43 1.77 16 9 N -0.50 -8.57 3.75 -179.14 -0.67 -9.24 16 10 C 0.03 0.38 8.97 60.06 0.54 0.92 16 11 C 0.07 1.34 5.06 -3.89 -0.02 1.32 16 12 C -0.01 -0.32 1.72 -91.55 -0.16 -0.48 16 13 H 0.03 0.77 5.51 -51.93 -0.29 0.49 16 14 C -0.51 -13.97 9.12 -34.44 -0.31 -14.28 16 15 H 0.08 2.27 8.00 -52.49 -0.42 1.85 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 17 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 18 Si 0.87 21.98 24.32 -169.99 -4.13 17.85 16 19 H -0.27 -6.70 7.00 56.52 0.40 -6.30 16 20 H -0.27 -6.56 6.51 56.52 0.37 -6.19 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 C -0.09 -1.98 3.68 -27.80 -0.10 -2.09 16 23 H 0.06 0.65 7.21 -51.93 -0.37 0.28 16 24 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 25 H 0.08 0.99 7.27 -51.93 -0.38 0.61 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.04 0.66 6.51 -51.92 -0.34 0.32 16 29 H 0.07 0.86 5.78 -51.93 -0.30 0.56 16 30 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.07 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.08 1.52 8.02 -51.93 -0.42 1.11 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.58 3.13 -51.93 -0.16 1.42 16 35 H 0.08 1.92 8.08 -51.93 -0.42 1.50 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -29.41 283.11 -8.05 -37.46 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.38 Total: -0.44 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.49 Total: -20.86 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.10 Total: -35.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.13 Total: 17.85 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.42 Total: -2.78 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.41 -8.05 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.671 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds