Wall clock time and date at job start Mon Mar 30 2020 07:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37861 * 119.77220 * 2 1 4 4 C 1.38254 * 119.96578 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.87073 * 0.13934 * 4 3 2 6 6 Cl 1.73605 * 119.76932 * 180.02562 * 5 4 3 7 7 C 1.38682 * 120.46071 * 0.02562 * 5 4 3 8 8 C 1.38398 * 119.85842 * 359.72186 * 7 5 4 9 9 N 1.39406 * 122.94876 * 180.48337 * 8 7 5 10 10 C 1.46897 * 110.99955 * 105.34822 * 9 8 7 11 11 C 1.46422 * 113.13812 * 339.79464 * 9 8 7 12 12 C 1.53383 * 108.67258 * 53.34865 * 11 9 8 13 13 H 1.08992 * 109.76954 * 51.43447 * 12 11 9 14 14 C 1.50697 * 109.76552 * 172.16808 * 12 11 9 15 15 H 1.08002 * 120.00599 * 359.26622 * 14 12 11 16 16 C 1.37880 * 119.99675 * 179.26155 * 14 12 11 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 12 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.50834 * 118.11214 * 179.42758 * 7 5 4 23 23 H 1.09003 * 109.46594 * 269.97561 * 1 2 3 24 24 H 1.08998 * 109.47401 * 29.97691 * 1 2 3 25 25 H 1.09005 * 109.47045 * 149.98279 * 1 2 3 26 26 H 1.07994 * 120.02211 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.06343 * 180.12196 * 4 3 2 28 28 H 1.09008 * 109.47055 * 293.25955 * 10 9 8 29 29 H 1.08999 * 109.47459 * 53.25813 * 10 9 8 30 30 H 1.08996 * 109.47479 * 173.25767 * 10 9 8 31 31 H 1.09006 * 109.60183 * 293.59450 * 11 9 8 32 32 H 1.08997 * 109.73626 * 173.18846 * 11 9 8 33 33 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 34 34 H 1.09001 * 109.49335 * 44.56257 * 22 7 5 35 35 H 1.08998 * 109.40267 * 284.66387 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1916 1.1966 0.0000 4 6 3.5741 1.2013 -0.0005 5 6 4.2666 0.0051 -0.0040 6 17 6.0026 0.0140 -0.0040 7 6 3.5842 -1.2023 -0.0075 8 6 2.2003 -1.2115 -0.0016 9 7 1.4499 -2.3864 0.0052 10 6 0.8662 -2.6305 1.3309 11 6 2.2032 -3.5529 -0.4593 12 6 3.4982 -3.6577 0.3560 13 1 3.2678 -3.6182 1.4206 14 6 4.1998 -4.9520 0.0341 15 1 3.7627 -5.6420 -0.6725 16 6 5.3998 -5.2552 0.6416 17 7 6.0120 -6.3849 0.3611 18 14 6.1556 -4.0620 1.8641 19 1 7.0435 -3.1131 1.1453 20 1 5.0768 -3.3069 2.5506 21 1 6.9474 -4.8171 2.8680 22 6 4.3926 -2.4755 -0.0244 23 1 -0.3632 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6483 2.1300 -0.0004 27 1 4.1120 2.1378 0.0015 28 1 1.6623 -2.8397 2.0456 29 1 0.3123 -1.7484 1.6521 30 1 0.1909 -3.4845 1.2790 31 1 2.4447 -3.4353 -1.5157 32 1 1.6083 -4.4553 -0.3184 33 1 6.8560 -6.5983 0.7887 34 1 5.2119 -2.3958 0.6901 35 1 4.7978 -2.6339 -1.0238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:45 Heat of formation + Delta-G solvation = 3.893321 kcal Electronic energy + Delta-G solvation = -18537.580778 eV Core-core repulsion = 15753.233474 eV Total energy + Delta-G solvation = -2784.347304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74621 -38.38367 -37.46616 -35.87119 -34.31860 -32.17665 -31.63929 -28.52516 -27.31675 -26.90534 -24.92252 -23.32123 -21.82815 -20.40982 -19.12983 -17.92309 -17.25684 -16.60902 -16.36985 -15.63895 -15.56805 -15.19928 -14.94543 -14.60790 -14.40847 -14.13037 -13.85825 -13.45272 -13.40643 -13.11716 -12.84153 -12.57404 -12.42546 -12.38193 -12.23310 -12.06188 -11.90864 -11.71581 -11.48122 -11.14062 -10.79934 -10.13984 -9.44435 -8.85711 -8.38658 -6.41771 0.17538 0.30495 1.17221 1.21796 1.24804 1.32351 2.21724 2.56241 2.93718 2.96060 3.75951 3.89864 3.97758 4.11811 4.21833 4.36412 4.44851 4.47869 4.57322 4.63653 4.72511 4.75915 4.83936 4.90522 4.93803 5.01955 5.18398 5.27318 5.30153 5.38293 5.45107 5.53360 5.57031 5.78299 6.00342 6.23065 6.38258 6.65399 7.23925 8.77544 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.009576 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.296095 B = 2923.126214 C = 4062.099032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.086 4.086 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.048 4.048 6 Cl -0.089 7.089 7 C -0.125 4.125 8 C 0.104 3.896 9 N -0.492 5.492 10 C 0.024 3.976 11 C 0.079 3.921 12 C -0.012 4.012 13 H 0.025 0.975 14 C -0.512 4.512 15 H 0.047 0.953 16 C 0.026 3.974 17 N -0.940 5.940 18 Si 0.928 3.072 19 H -0.267 1.267 20 H -0.258 1.258 21 H -0.292 1.292 22 C -0.080 4.080 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.172 0.828 27 H 0.154 0.846 28 H 0.016 0.984 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 17.731 1.400 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.139 4.139 5 C -0.076 4.076 6 Cl -0.060 7.060 7 C -0.129 4.129 8 C 0.007 3.993 9 N -0.207 5.207 10 C -0.121 4.121 11 C -0.048 4.048 12 C -0.032 4.032 13 H 0.043 0.957 14 C -0.551 4.551 15 H 0.065 0.935 16 C -0.172 4.172 17 N -0.580 5.580 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.183 1.183 21 H -0.219 1.219 22 C -0.117 4.117 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.189 0.811 27 H 0.172 0.828 28 H 0.034 0.966 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.767 17.624 1.119 20.683 hybrid contribution 2.159 -0.525 0.846 2.378 sum -8.608 17.099 1.965 19.244 Atomic orbital electron populations 1.20804 0.88218 1.03970 1.03046 1.20277 0.98229 0.90542 0.99725 1.21198 0.92581 0.98564 0.99040 1.21209 0.95089 0.96035 1.01522 1.21020 0.83665 0.95183 1.07687 1.98339 1.11810 1.98889 1.97007 1.20167 0.94469 0.94468 1.03765 1.18566 0.88677 0.92107 0.99938 1.58914 1.33686 1.01730 1.26406 1.22599 0.98813 1.03952 0.86761 1.22013 0.92691 0.91684 0.98454 1.19634 0.94765 0.92617 0.96182 0.95695 1.21165 1.05632 1.03152 1.25109 0.93499 1.25651 0.97413 0.96243 0.97885 1.70004 1.17864 1.25078 1.45098 0.86142 0.79288 0.79227 0.79788 1.19241 1.18317 1.21929 1.20921 0.97668 0.92245 1.00902 0.90038 0.89561 0.90975 0.81073 0.82817 0.96562 0.88612 0.89331 0.91772 0.89899 0.92419 0.92971 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 8.49 71.24 0.60 -1.23 16 2 C -0.09 -2.12 5.72 -19.63 -0.11 -2.24 16 3 C -0.10 -2.01 9.67 22.18 0.21 -1.79 16 4 C -0.12 -2.99 9.82 22.27 0.22 -2.77 16 5 C -0.05 -1.62 6.31 22.37 0.14 -1.48 16 6 Cl -0.09 -3.08 27.37 -2.72 -0.07 -3.15 16 7 C -0.13 -4.75 5.75 -19.68 -0.11 -4.87 16 8 C 0.10 3.44 5.12 38.30 0.20 3.63 16 9 N -0.49 -16.08 3.75 -720.66 -2.70 -18.78 16 10 C 0.02 0.66 8.97 127.69 1.15 1.81 16 11 C 0.08 3.12 5.06 86.52 0.44 3.56 16 12 C -0.01 -0.56 1.72 -11.40 -0.02 -0.58 16 13 H 0.03 1.22 5.51 -2.39 -0.01 1.21 16 14 C -0.51 -29.11 9.12 25.60 0.23 -28.88 16 15 H 0.05 2.89 8.00 -2.91 -0.02 2.86 16 16 C 0.03 1.55 5.45 84.65 0.46 2.02 16 17 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 18 Si 0.93 46.70 24.32 68.60 1.67 48.37 16 19 H -0.27 -13.10 7.00 99.48 0.70 -12.40 16 20 H -0.26 -12.50 6.51 99.48 0.65 -11.86 16 21 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 22 C -0.08 -3.62 3.68 29.91 0.11 -3.51 16 23 H 0.08 1.20 7.21 -2.39 -0.02 1.18 16 24 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 25 H 0.07 1.45 7.27 -2.38 -0.02 1.44 16 26 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 27 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.02 0.52 6.51 -2.38 -0.02 0.50 16 29 H 0.10 2.09 5.78 -2.39 -0.01 2.08 16 30 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 31 H 0.06 2.63 8.11 -2.38 -0.02 2.61 16 32 H 0.08 3.18 8.02 -2.39 -0.02 3.16 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.05 2.47 3.13 -2.39 -0.01 2.46 16 35 H 0.06 2.92 8.08 -2.39 -0.02 2.91 16 Total: -1.00 -66.62 283.11 3.74 -62.88 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.03 Total: 5.68 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.52 Total: -36.33 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -2.40 Total: -77.45 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.67 Total: 48.37 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.07 Total: -3.15 kcal Total: -66.62 3.74 -62.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.776 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds