Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37965 * 119.79902 * 2 1 4 4 Cl 1.73603 * 120.03707 * 359.95112 * 3 2 1 5 5 C 1.38381 * 119.92445 * 179.97438 * 3 2 1 6 6 C 1.38075 * 119.87830 * 0.14008 * 5 3 2 7 7 C 1.38583 * 120.50319 * 0.04280 * 6 5 3 8 8 C 1.38429 * 119.88152 * 359.69200 * 7 6 5 9 9 N 1.39401 * 122.94598 * 180.46408 * 8 7 6 10 10 C 1.46905 * 111.00316 * 105.27244 * 9 8 7 11 11 C 1.46428 * 113.12845 * 339.72559 * 9 8 7 12 12 C 1.53380 * 108.65138 * 53.41122 * 11 9 8 13 13 H 1.08999 * 109.77004 * 51.42395 * 12 11 9 14 14 C 1.50702 * 109.76592 * 172.14806 * 12 11 9 15 15 H 1.08002 * 120.00299 * 359.27386 * 14 12 11 16 16 C 1.37884 * 119.99942 * 178.98945 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.50833 * 118.10015 * 179.36863 * 7 6 5 23 23 H 1.08995 * 109.46876 * 269.98054 * 1 2 3 24 24 H 1.09008 * 109.46642 * 29.97192 * 1 2 3 25 25 H 1.08991 * 109.47283 * 149.97203 * 1 2 3 26 26 H 1.08007 * 120.06282 * 180.16294 * 5 3 2 27 27 H 1.07996 * 119.74865 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46861 * 293.28209 * 10 9 8 29 29 H 1.09006 * 109.46773 * 53.27359 * 10 9 8 30 30 H 1.08997 * 109.47446 * 173.27345 * 10 9 8 31 31 H 1.09000 * 109.60588 * 293.66388 * 11 9 8 32 32 H 1.08997 * 109.74810 * 173.24146 * 11 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 34 34 H 1.09009 * 109.48893 * 44.63216 * 22 7 6 35 35 H 1.08999 * 109.40641 * 284.74206 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1972 0.0000 4 17 1.3204 2.6982 -0.0013 5 6 3.5765 1.2003 0.0005 6 6 4.2669 0.0045 -0.0019 7 6 3.5847 -1.2017 -0.0057 8 6 2.2004 -1.2111 -0.0007 9 7 1.4503 -2.3861 0.0054 10 6 0.8672 -2.6317 1.3312 11 6 2.2038 -3.5519 -0.4606 12 6 3.4982 -3.6576 0.3554 13 1 3.2671 -3.6194 1.4199 14 6 4.2000 -4.9515 0.0325 15 1 3.7634 -5.6407 -0.6752 16 6 5.4025 -5.2529 0.6362 17 7 5.9341 -4.4137 1.4979 18 14 6.2761 -6.8533 0.2301 19 1 7.1910 -6.6398 -0.9200 20 1 7.0595 -7.3024 1.4090 21 1 5.2726 -7.8898 -0.1214 22 6 4.3930 -2.4751 -0.0228 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3633 -0.8896 -0.5142 26 1 4.1155 2.1362 0.0032 27 1 5.3469 0.0093 -0.0010 28 1 1.6637 -2.8411 2.0452 29 1 0.3131 -1.7500 1.6534 30 1 0.1923 -3.4859 1.2787 31 1 2.4459 -3.4327 -1.5167 32 1 1.6089 -4.4546 -0.3214 33 1 6.7799 -4.6259 1.9229 34 1 5.2114 -2.3959 0.6928 35 1 4.7994 -2.6326 -1.0219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = 12.449803 kcal Electronic energy + Delta-G solvation = -18242.211653 eV Core-core repulsion = 15458.235386 eV Total energy + Delta-G solvation = -2783.976267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16940 -37.06663 -35.74899 -34.32779 -32.45122 -30.41934 -29.65006 -27.18197 -25.69286 -25.11904 -23.23939 -21.74503 -20.45393 -18.70122 -16.75922 -16.40572 -15.48449 -14.99144 -14.72860 -14.16084 -13.78786 -13.56310 -13.31352 -12.81240 -12.74698 -12.48589 -12.21828 -11.94196 -11.89519 -11.61480 -11.09413 -11.03009 -10.92966 -10.87746 -10.58788 -10.53672 -10.27315 -10.06114 -9.76422 -8.99225 -8.65438 -8.48090 -7.95137 -7.31462 -6.11946 -4.18502 1.63156 1.68419 2.41472 3.23934 3.31501 3.34138 3.97882 4.33655 4.50567 5.16220 5.18284 5.29290 5.46759 5.57676 5.77595 5.84044 5.92345 5.95985 5.99873 6.08506 6.09875 6.25001 6.34789 6.50955 6.59120 6.65297 6.76662 6.81899 6.83930 7.09485 7.14551 7.56245 7.56889 7.65338 7.90453 7.94924 8.28597 8.84820 9.47396 10.95110 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.005507 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.471258 B = 5083.342656 C = 5650.983742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.040 4.040 4 Cl -0.088 7.088 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.087 4.087 8 C 0.120 3.880 9 N -0.504 5.504 10 C 0.027 3.973 11 C 0.059 3.941 12 C 0.021 3.979 13 H 0.033 0.967 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.074 4.074 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.100 0.900 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 9.122 -1.571 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.089 4.089 3 C -0.067 4.067 4 Cl -0.059 7.059 5 C -0.148 4.148 6 C -0.125 4.125 7 C -0.089 4.089 8 C 0.023 3.977 9 N -0.220 5.220 10 C -0.118 4.118 11 C -0.067 4.067 12 C 0.001 3.999 13 H 0.051 0.949 14 C -0.554 4.554 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.112 4.112 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.682 9.271 -1.763 12.168 hybrid contribution 1.287 -0.740 0.305 1.516 sum -6.394 8.531 -1.459 10.761 Atomic orbital electron populations 1.20758 0.90680 1.03172 1.01834 1.19545 0.96443 0.90166 1.02744 1.20392 0.91961 0.85635 1.08698 1.98306 1.77190 1.33212 1.97229 1.20814 0.91773 0.98685 1.03481 1.21001 0.99923 0.91043 1.00540 1.20904 0.93378 0.97530 0.97126 1.18261 0.90081 0.89901 0.99464 1.58736 1.35154 1.02846 1.25218 1.22441 0.99226 1.01494 0.88687 1.22414 0.95078 0.89711 0.99535 1.19231 0.90982 0.94033 0.95637 0.94927 1.21038 1.05621 1.03271 1.25486 0.92304 1.24975 0.97250 0.96829 0.94705 1.69894 1.18942 1.35865 1.28093 0.86578 0.79718 0.83744 0.77898 1.20618 1.21230 1.19841 1.20847 0.99061 0.89232 1.02023 0.91784 0.91897 0.90102 0.85837 0.85588 0.94017 0.91732 0.91250 0.91483 0.90985 0.92852 0.88185 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.10 36.01 0.29 -1.21 16 2 C -0.09 -1.44 5.72 -104.23 -0.60 -2.03 16 3 C -0.04 -0.64 6.30 -39.63 -0.25 -0.89 16 4 Cl -0.09 -1.20 27.26 -51.86 -1.41 -2.61 16 5 C -0.13 -2.02 9.83 -39.59 -0.39 -2.41 16 6 C -0.11 -1.85 9.63 -39.51 -0.38 -2.23 16 7 C -0.09 -1.72 5.74 -104.36 -0.60 -2.32 16 8 C 0.12 2.25 5.11 -83.86 -0.43 1.82 16 9 N -0.50 -9.16 3.75 -179.13 -0.67 -9.83 16 10 C 0.03 0.44 8.98 60.07 0.54 0.98 16 11 C 0.06 1.19 5.06 -3.88 -0.02 1.17 16 12 C 0.02 0.48 2.15 -91.55 -0.20 0.29 16 13 H 0.03 0.85 6.43 -51.93 -0.33 0.51 16 14 C -0.52 -13.35 8.54 -34.44 -0.29 -13.64 16 15 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -24.32 11.56 55.43 0.64 -23.68 16 18 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 22 C -0.07 -1.68 4.71 -27.80 -0.13 -1.81 16 23 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 24 H 0.06 0.81 6.87 -51.92 -0.36 0.46 16 25 H 0.08 1.15 7.27 -51.93 -0.38 0.77 16 26 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 27 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.04 0.76 6.50 -51.93 -0.34 0.43 16 29 H 0.06 0.93 5.79 -51.93 -0.30 0.63 16 30 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.07 1.40 8.02 -51.93 -0.42 0.98 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.10 2.49 6.60 -51.92 -0.34 2.15 16 35 H 0.06 1.43 8.08 -51.93 -0.42 1.01 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -26.45 289.80 -9.14 -35.59 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.49 Total: 1.42 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.55 Total: -20.68 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.03 Total: -33.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.41 Total: -2.61 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.45 -9.14 -35.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.037 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds