Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37965 * 119.79902 * 2 1 4 4 Cl 1.73603 * 120.03707 * 359.95112 * 3 2 1 5 5 C 1.38381 * 119.92445 * 179.97438 * 3 2 1 6 6 C 1.38075 * 119.87830 * 0.14008 * 5 3 2 7 7 C 1.38583 * 120.50319 * 0.04280 * 6 5 3 8 8 C 1.38429 * 119.88152 * 359.69200 * 7 6 5 9 9 N 1.39401 * 122.94598 * 180.46408 * 8 7 6 10 10 C 1.46905 * 111.00316 * 105.27244 * 9 8 7 11 11 C 1.46428 * 113.12845 * 339.72559 * 9 8 7 12 12 C 1.53380 * 108.65138 * 53.41122 * 11 9 8 13 13 H 1.08999 * 109.77004 * 51.42395 * 12 11 9 14 14 C 1.50702 * 109.76592 * 172.14806 * 12 11 9 15 15 H 1.08002 * 120.00299 * 359.27386 * 14 12 11 16 16 C 1.37884 * 119.99942 * 178.98945 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.50833 * 118.10015 * 179.36863 * 7 6 5 23 23 H 1.08995 * 109.46876 * 269.98054 * 1 2 3 24 24 H 1.09008 * 109.46642 * 29.97192 * 1 2 3 25 25 H 1.08991 * 109.47283 * 149.97203 * 1 2 3 26 26 H 1.08007 * 120.06282 * 180.16294 * 5 3 2 27 27 H 1.07996 * 119.74865 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.46861 * 293.28209 * 10 9 8 29 29 H 1.09006 * 109.46773 * 53.27359 * 10 9 8 30 30 H 1.08997 * 109.47446 * 173.27345 * 10 9 8 31 31 H 1.09000 * 109.60588 * 293.66388 * 11 9 8 32 32 H 1.08997 * 109.74810 * 173.24146 * 11 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 34 34 H 1.09009 * 109.48893 * 44.63216 * 22 7 6 35 35 H 1.08999 * 109.40641 * 284.74206 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1972 0.0000 4 17 1.3204 2.6982 -0.0013 5 6 3.5765 1.2003 0.0005 6 6 4.2669 0.0045 -0.0019 7 6 3.5847 -1.2017 -0.0057 8 6 2.2004 -1.2111 -0.0007 9 7 1.4503 -2.3861 0.0054 10 6 0.8672 -2.6317 1.3312 11 6 2.2038 -3.5519 -0.4606 12 6 3.4982 -3.6576 0.3554 13 1 3.2671 -3.6194 1.4199 14 6 4.2000 -4.9515 0.0325 15 1 3.7634 -5.6407 -0.6752 16 6 5.4025 -5.2529 0.6362 17 7 5.9341 -4.4137 1.4979 18 14 6.2761 -6.8533 0.2301 19 1 7.1910 -6.6398 -0.9200 20 1 7.0595 -7.3024 1.4090 21 1 5.2726 -7.8898 -0.1214 22 6 4.3930 -2.4751 -0.0228 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3633 -0.8896 -0.5142 26 1 4.1155 2.1362 0.0032 27 1 5.3469 0.0093 -0.0010 28 1 1.6637 -2.8411 2.0452 29 1 0.3131 -1.7500 1.6534 30 1 0.1923 -3.4859 1.2787 31 1 2.4459 -3.4327 -1.5167 32 1 1.6089 -4.4546 -0.3214 33 1 6.7799 -4.6259 1.9229 34 1 5.2114 -2.3959 0.6928 35 1 4.7994 -2.6326 -1.0219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = -0.047465 kcal Electronic energy + Delta-G solvation = -18242.753575 eV Core-core repulsion = 15458.235386 eV Total energy + Delta-G solvation = -2784.518189 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.61155 -38.43381 -37.03005 -35.98619 -34.14279 -31.90329 -31.25373 -28.50909 -27.19012 -26.89880 -24.73050 -23.37936 -21.82808 -20.31128 -18.62220 -17.80823 -17.00492 -16.62555 -16.32597 -15.54816 -15.30246 -15.09922 -14.69425 -14.42210 -14.18976 -14.04439 -13.48669 -13.41215 -13.28109 -12.95267 -12.79319 -12.70932 -12.57462 -12.32598 -12.09025 -12.03583 -11.69747 -11.67781 -11.50379 -10.88280 -10.54803 -10.06116 -9.34975 -8.78636 -8.13097 -6.27163 0.25302 0.34332 1.17485 1.41066 1.42745 1.52109 2.41190 2.60930 3.04986 3.15329 3.89706 4.01935 4.06675 4.22039 4.33717 4.44769 4.54102 4.63839 4.69203 4.73677 4.81225 4.86354 4.88662 5.00303 5.03762 5.10408 5.30417 5.33845 5.46095 5.53175 5.60823 5.69985 5.80096 5.93102 6.06574 6.31685 6.46747 6.83527 7.41747 8.92193 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.005507 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.471258 B = 5083.342656 C = 5650.983742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.087 4.087 3 C -0.040 4.040 4 Cl -0.060 7.060 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.117 4.117 8 C 0.103 3.897 9 N -0.496 5.496 10 C 0.029 3.971 11 C 0.070 3.930 12 C 0.021 3.979 13 H 0.002 0.998 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.059 4.059 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.014 0.986 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 10.343 -2.024 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.067 4.067 4 Cl -0.032 7.032 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.119 4.119 8 C 0.006 3.994 9 N -0.211 5.211 10 C -0.117 4.117 11 C -0.057 4.057 12 C 0.001 3.999 13 H 0.020 0.980 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.097 4.097 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.170 0.830 27 H 0.150 0.850 28 H 0.032 0.968 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.082 10.503 -2.222 14.062 hybrid contribution 1.673 -0.994 0.463 2.000 sum -7.409 9.510 -1.759 12.183 Atomic orbital electron populations 1.20796 0.88569 1.03775 1.02932 1.19786 0.97939 0.89500 1.01737 1.20558 0.92296 0.86631 1.07256 1.98319 1.76560 1.31256 1.97018 1.21076 0.92029 0.98955 1.01852 1.21098 1.00431 0.91044 1.00522 1.20752 0.94076 0.96929 1.00175 1.18430 0.89795 0.90883 1.00247 1.58820 1.34271 1.01942 1.26069 1.22511 0.98624 1.03374 0.87147 1.22189 0.93766 0.91097 0.98601 1.19144 0.92780 0.93651 0.94331 0.97961 1.21414 1.06033 1.04306 1.25323 0.92294 1.25721 0.98023 0.99809 0.94652 1.70036 1.19189 1.37417 1.29021 0.85612 0.78628 0.80201 0.77573 1.20212 1.21172 1.19076 1.20469 0.98402 0.90893 0.99934 0.90276 0.90578 0.90229 0.83018 0.85019 0.96776 0.89461 0.89416 0.91959 0.90309 0.92998 0.91310 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 8.10 71.24 0.58 -2.01 16 2 C -0.09 -2.71 5.72 -19.61 -0.11 -2.82 16 3 C -0.04 -1.17 6.30 22.24 0.14 -1.03 16 4 Cl -0.06 -1.43 27.26 -2.72 -0.07 -1.51 16 5 C -0.12 -3.52 9.83 22.27 0.22 -3.31 16 6 C -0.11 -3.89 9.63 22.31 0.21 -3.68 16 7 C -0.12 -4.71 5.74 -19.69 -0.11 -4.83 16 8 C 0.10 3.82 5.11 38.30 0.20 4.02 16 9 N -0.50 -17.76 3.75 -720.64 -2.70 -20.46 16 10 C 0.03 0.91 8.98 127.69 1.15 2.06 16 11 C 0.07 2.88 5.06 86.52 0.44 3.32 16 12 C 0.02 1.01 2.15 -11.40 -0.02 0.98 16 13 H 0.00 0.13 6.43 -2.39 -0.02 0.11 16 14 C -0.53 -28.36 8.54 25.60 0.22 -28.14 16 15 H 0.06 3.06 7.75 -2.91 -0.02 3.03 16 16 C 0.02 0.92 5.31 84.66 0.45 1.37 16 17 N -0.92 -51.96 11.56 21.45 0.25 -51.72 16 18 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.06 -2.82 4.71 29.90 0.14 -2.68 16 23 H 0.08 1.75 7.22 -2.39 -0.02 1.73 16 24 H 0.08 1.69 6.87 -2.38 -0.02 1.67 16 25 H 0.08 2.03 7.27 -2.39 -0.02 2.01 16 26 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.01 0.51 6.50 -2.39 -0.02 0.50 16 29 H 0.09 2.35 5.79 -2.38 -0.01 2.33 16 30 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 31 H 0.06 2.58 8.11 -2.39 -0.02 2.56 16 32 H 0.08 3.06 8.02 -2.39 -0.02 3.04 16 33 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 34 H 0.07 3.64 6.60 -2.38 -0.02 3.63 16 35 H 0.04 2.17 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -57.67 289.80 4.08 -53.59 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.09 Total: 12.25 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.49 Total: -36.74 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.46 Total: -72.18 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.51 kcal Total: -57.67 4.08 -53.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -57.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds