Wall clock time and date at job start Mon Mar 30 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99994 * 2 1 4 4 H 1.48503 * 109.46938 * 269.99450 * 3 2 1 5 5 H 1.48493 * 109.47551 * 29.99909 * 3 2 1 6 6 H 1.48504 * 109.47171 * 150.00015 * 3 2 1 7 7 C 1.37874 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47048 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.90578 * 53.90154 * 10 9 7 12 12 N 1.47899 * 110.08275 * 292.68781 * 10 9 7 13 13 C 1.48538 * 105.82096 * 265.88614 * 12 10 9 14 14 C 1.54933 * 103.22579 * 320.79703 * 13 12 10 15 15 C 1.53997 * 109.91378 * 174.99977 * 10 9 7 16 16 H 1.08998 * 110.30811 * 359.40946 * 15 10 9 17 17 C 1.50700 * 110.30674 * 237.24160 * 15 10 9 18 18 C 1.38237 * 120.00648 * 299.99854 * 17 15 10 19 19 C 1.38222 * 120.00982 * 179.97438 * 18 17 15 20 20 C 1.38258 * 120.02898 * 359.97438 * 19 18 17 21 21 C 1.38195 * 120.01392 * 0.02749 * 20 19 18 22 22 C 1.38330 * 120.00546 * 119.73116 * 17 15 10 23 23 Cl 1.73603 * 120.01315 * 359.97167 * 22 17 15 24 24 H 0.97002 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46871 * 59.99968 * 9 7 2 26 26 H 1.08994 * 109.46815 * 299.99622 * 9 7 2 27 27 H 1.00894 * 111.00299 * 26.39977 * 12 10 9 28 28 H 1.09007 * 110.66246 * 79.22764 * 13 12 10 29 29 H 1.08993 * 110.66671 * 202.18915 * 13 12 10 30 30 H 1.09007 * 110.72333 * 279.05054 * 14 13 12 31 31 H 1.09004 * 110.72411 * 155.77248 * 14 13 12 32 32 H 1.07997 * 119.99566 * 0.02562 * 18 17 15 33 33 H 1.08007 * 119.98117 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.99216 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.00577 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9453 -3.5518 0.8286 12 7 2.9824 -3.6999 -1.2810 13 6 2.2369 -4.6469 -2.1493 14 6 1.8199 -5.7726 -1.1698 15 6 1.4897 -4.9981 0.1267 16 1 0.4167 -4.8206 0.1986 17 6 1.9764 -5.7624 1.3309 18 6 3.3046 -6.1342 1.4233 19 6 3.7511 -6.8348 2.5280 20 6 2.8700 -7.1636 3.5414 21 6 1.5419 -6.7924 3.4502 22 6 1.0952 -6.0871 2.3466 23 17 -0.5713 -5.6138 2.2349 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 3.0264 -2.7832 -1.7001 28 1 1.3583 -4.1652 -2.5783 29 1 2.8826 -5.0374 -2.9358 30 1 2.6447 -6.4661 -1.0055 31 1 0.9398 -6.2990 -1.5394 32 1 3.9936 -5.8766 0.6326 33 1 4.7891 -7.1247 2.5999 34 1 3.2196 -7.7106 4.4045 35 1 0.8537 -7.0496 4.2416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:47 Heat of formation + Delta-G solvation = 3.964514 kcal Electronic energy + Delta-G solvation = -17885.003846 eV Core-core repulsion = 15100.659629 eV Total energy + Delta-G solvation = -2784.344217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74029 -37.66489 -36.18137 -33.06658 -32.00432 -30.57177 -30.08328 -28.20246 -26.04796 -23.17356 -22.71922 -21.68051 -20.25963 -19.13050 -17.10239 -16.22496 -15.74027 -15.40312 -14.89232 -14.54471 -14.39239 -13.62990 -13.44807 -12.99758 -12.51312 -12.14153 -12.07486 -11.71527 -11.48103 -11.39099 -11.29464 -11.26346 -10.98082 -10.91947 -10.58988 -10.50620 -10.25965 -9.87144 -9.63959 -9.13917 -8.69490 -8.40891 -8.35409 -7.63555 -6.02461 -4.05731 1.31483 1.41708 2.39537 3.30784 3.37597 3.41426 3.76549 4.43926 4.82550 4.90140 5.01495 5.09608 5.31165 5.35249 5.35674 5.45443 5.54451 5.69863 5.83978 5.96673 6.02465 6.16225 6.23685 6.30621 6.34674 6.47420 6.53207 6.65112 6.77594 6.88962 6.96432 7.38650 7.66495 7.79925 7.97459 8.19039 8.37694 9.01839 9.59152 11.08414 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.006100 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.437851 B = 4588.763205 C = 4909.743266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.088 3.912 11 H 0.074 0.926 12 N -0.669 5.669 13 C 0.037 3.963 14 C -0.112 4.112 15 C -0.073 4.073 16 H 0.093 0.907 17 C -0.046 4.046 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.035 4.035 23 Cl -0.066 7.066 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.022 0.978 27 H 0.350 0.650 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -14.951 2.995 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.034 4.034 10 C -0.021 4.021 11 H 0.092 0.908 12 N -0.300 5.300 13 C -0.093 4.093 14 C -0.150 4.150 15 C -0.092 4.092 16 H 0.111 0.889 17 C -0.047 4.047 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.140 4.140 21 C -0.133 4.133 22 C -0.061 4.061 23 Cl -0.037 7.037 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.168 0.832 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.967 -15.229 3.194 16.058 hybrid contribution -0.666 1.614 -0.107 1.749 sum 3.301 -13.615 3.087 14.345 Atomic orbital electron populations 1.69972 1.06097 1.26620 1.50478 1.25014 0.94786 0.99253 0.95180 0.86606 0.79914 0.83489 0.78087 1.20672 1.21313 1.19807 1.21201 0.93115 0.90750 1.50924 0.92271 1.19689 0.94230 0.91894 0.97622 1.22424 0.94834 0.92525 0.92359 0.90841 1.63310 1.48166 1.14466 1.04038 1.22938 0.96676 0.93948 0.95726 1.22567 1.00589 0.97392 0.94439 1.21404 1.01657 0.95091 0.91017 0.88929 1.19818 0.92967 0.96707 0.95217 1.21104 0.94713 0.97297 0.98511 1.21209 0.99723 0.98663 0.94048 1.21008 0.92759 1.00993 0.99210 1.20973 0.96475 0.98913 0.96937 1.20912 0.86134 1.01991 0.97104 1.98368 1.16562 1.90871 1.97915 0.93011 0.96756 0.95943 0.83170 0.94267 0.91132 0.91141 0.91778 0.84538 0.85779 0.85660 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.39 8.21 -34.44 -0.28 -14.67 16 8 H 0.06 1.60 7.70 -52.49 -0.40 1.20 16 9 C 0.00 0.09 4.29 -27.88 -0.12 -0.03 16 10 C 0.09 1.82 2.79 -66.64 -0.19 1.63 16 11 H 0.07 1.62 7.35 -51.93 -0.38 1.23 16 12 N -0.67 -12.69 7.39 -103.13 -0.76 -13.45 16 13 C 0.04 0.60 7.54 -1.90 -0.01 0.59 16 14 C -0.11 -1.70 6.49 -24.87 -0.16 -1.86 16 15 C -0.07 -1.28 2.73 -90.41 -0.25 -1.53 16 16 H 0.09 1.77 5.79 -51.93 -0.30 1.47 16 17 C -0.05 -0.74 4.72 -104.59 -0.49 -1.24 16 18 C -0.10 -1.40 8.18 -39.59 -0.32 -1.73 16 19 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 20 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 21 C -0.11 -1.49 9.83 -39.55 -0.39 -1.88 16 22 C -0.03 -0.54 6.31 -39.50 -0.25 -0.79 16 23 Cl -0.07 -1.06 27.04 -51.86 -1.40 -2.46 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.35 7.18 7.61 -39.30 -0.30 6.88 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.99 6.84 -51.92 -0.36 0.63 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.14 1.93 7.69 -52.49 -0.40 1.53 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 301.38 15.07 4.54 4.54 Total: -1.00 -29.48 301.38 -9.93 -39.41 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.66 Total: 4.88 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.36 Total: -23.56 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.03 Total: -39.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.40 Total: -2.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.48 -9.93 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds