Wall clock time and date at job start Mon Mar 30 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 119.99994 * 2 1 4 4 H 1.48503 * 109.46938 * 269.99450 * 3 2 1 5 5 H 1.48493 * 109.47551 * 29.99909 * 3 2 1 6 6 H 1.48504 * 109.47171 * 150.00015 * 3 2 1 7 7 C 1.37874 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47048 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.90578 * 53.90154 * 10 9 7 12 12 N 1.47899 * 110.08275 * 292.68781 * 10 9 7 13 13 C 1.48538 * 105.82096 * 265.88614 * 12 10 9 14 14 C 1.54933 * 103.22579 * 320.79703 * 13 12 10 15 15 C 1.53997 * 109.91378 * 174.99977 * 10 9 7 16 16 H 1.08998 * 110.30811 * 359.40946 * 15 10 9 17 17 C 1.50700 * 110.30674 * 237.24160 * 15 10 9 18 18 C 1.38237 * 120.00648 * 299.99854 * 17 15 10 19 19 C 1.38222 * 120.00982 * 179.97438 * 18 17 15 20 20 C 1.38258 * 120.02898 * 359.97438 * 19 18 17 21 21 C 1.38195 * 120.01392 * 0.02749 * 20 19 18 22 22 C 1.38330 * 120.00546 * 119.73116 * 17 15 10 23 23 Cl 1.73603 * 120.01315 * 359.97167 * 22 17 15 24 24 H 0.97002 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46871 * 59.99968 * 9 7 2 26 26 H 1.08994 * 109.46815 * 299.99622 * 9 7 2 27 27 H 1.00894 * 111.00299 * 26.39977 * 12 10 9 28 28 H 1.09007 * 110.66246 * 79.22764 * 13 12 10 29 29 H 1.08993 * 110.66671 * 202.18915 * 13 12 10 30 30 H 1.09007 * 110.72333 * 279.05054 * 14 13 12 31 31 H 1.09004 * 110.72411 * 155.77248 * 14 13 12 32 32 H 1.07997 * 119.99566 * 0.02562 * 18 17 15 33 33 H 1.08007 * 119.98117 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.99216 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.00577 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9453 -3.5518 0.8286 12 7 2.9824 -3.6999 -1.2810 13 6 2.2369 -4.6469 -2.1493 14 6 1.8199 -5.7726 -1.1698 15 6 1.4897 -4.9981 0.1267 16 1 0.4167 -4.8206 0.1986 17 6 1.9764 -5.7624 1.3309 18 6 3.3046 -6.1342 1.4233 19 6 3.7511 -6.8348 2.5280 20 6 2.8700 -7.1636 3.5414 21 6 1.5419 -6.7924 3.4502 22 6 1.0952 -6.0871 2.3466 23 17 -0.5713 -5.6138 2.2349 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 3.0264 -2.7832 -1.7001 28 1 1.3583 -4.1652 -2.5783 29 1 2.8826 -5.0374 -2.9358 30 1 2.6447 -6.4661 -1.0055 31 1 0.9398 -6.2990 -1.5394 32 1 3.9936 -5.8766 0.6326 33 1 4.7891 -7.1247 2.5999 34 1 3.2196 -7.7106 4.4045 35 1 0.8537 -7.0496 4.2416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:47 Heat of formation + Delta-G solvation = -13.344161 kcal Electronic energy + Delta-G solvation = -17885.754407 eV Core-core repulsion = 15100.659629 eV Total energy + Delta-G solvation = -2785.094777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96475 -39.00386 -37.35430 -35.14410 -33.26089 -31.91092 -31.58199 -29.54274 -27.83643 -24.92054 -23.86808 -22.89951 -21.72487 -20.61690 -18.58025 -17.95300 -17.20572 -16.67742 -16.42609 -16.02635 -15.74818 -14.72164 -14.64509 -14.48664 -14.19887 -13.78710 -13.65867 -13.33927 -13.01039 -12.87227 -12.66976 -12.56270 -12.38515 -12.31212 -12.18741 -12.03957 -11.74574 -11.61769 -11.28342 -11.05886 -10.60069 -9.76140 -9.51297 -9.26496 -8.21510 -6.32967 0.26134 0.37844 1.24967 1.38643 1.39578 1.50926 2.39015 2.72892 3.10641 3.54322 3.64968 3.81942 4.01033 4.06226 4.21051 4.35533 4.46871 4.48099 4.55988 4.70892 4.81475 4.86515 4.90827 5.01163 5.10186 5.11619 5.23939 5.35727 5.36039 5.52319 5.56452 5.66737 5.76772 5.96186 6.08583 6.21960 6.53453 6.83530 7.36812 8.89909 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.006100 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.437851 B = 4588.763205 C = 4909.743266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.016 3.984 10 C 0.100 3.900 11 H 0.059 0.941 12 N -0.664 5.664 13 C 0.035 3.965 14 C -0.103 4.103 15 C -0.068 4.068 16 H 0.070 0.930 17 C -0.070 4.070 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.056 4.056 23 Cl -0.085 7.085 24 H 0.262 0.738 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.339 0.661 28 H 0.023 0.977 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -16.254 3.584 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.081 0.919 9 C -0.022 4.022 10 C -0.010 4.010 11 H 0.078 0.922 12 N -0.293 5.293 13 C -0.094 4.094 14 C -0.141 4.141 15 C -0.088 4.088 16 H 0.088 0.912 17 C -0.071 4.071 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.082 4.082 23 Cl -0.057 7.057 24 H 0.071 0.929 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.156 0.844 28 H 0.041 0.959 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.282 -16.553 3.776 18.103 hybrid contribution -1.367 1.961 -0.250 2.404 sum 4.914 -14.592 3.526 15.796 Atomic orbital electron populations 1.70114 1.07883 1.27648 1.51605 1.25944 0.95623 1.03261 0.94693 0.85475 0.78631 0.78575 0.78551 1.19554 1.21125 1.18826 1.21557 0.93438 0.91787 1.50394 0.91868 1.19519 0.94380 0.93812 0.94482 1.22137 0.93450 0.92466 0.92909 0.92239 1.63336 1.48011 1.14150 1.03798 1.23079 0.96476 0.93563 0.96263 1.22571 1.01858 0.97029 0.92604 1.21206 0.99848 0.94119 0.93578 0.91189 1.19747 0.94174 0.98163 0.94993 1.21196 0.93727 0.97915 0.99669 1.21601 1.01423 0.97025 0.92875 1.21472 0.91701 0.99723 0.99976 1.21293 0.97796 0.98130 0.96404 1.21139 0.85349 1.03493 0.98253 1.98356 1.18074 1.91211 1.98023 0.92910 0.99510 0.99494 0.84387 0.95852 0.88124 0.89251 0.90384 0.84558 0.82506 0.81884 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.53 -30.26 8.21 25.60 0.21 -30.05 16 8 H 0.06 3.46 7.70 -2.91 -0.02 3.44 16 9 C 0.02 0.87 4.29 29.85 0.13 1.00 16 10 C 0.10 4.26 2.79 45.06 0.13 4.39 16 11 H 0.06 2.68 7.35 -2.39 -0.02 2.66 16 12 N -0.66 -25.21 7.39 -480.20 -3.55 -28.76 16 13 C 0.04 1.13 7.54 86.65 0.65 1.78 16 14 C -0.10 -3.04 6.49 31.80 0.21 -2.83 16 15 C -0.07 -2.46 2.73 -10.66 -0.03 -2.49 16 16 H 0.07 2.82 5.79 -2.39 -0.01 2.81 16 17 C -0.07 -2.23 4.72 -19.84 -0.09 -2.32 16 18 C -0.11 -2.86 8.18 22.27 0.18 -2.68 16 19 C -0.11 -2.29 10.05 22.27 0.22 -2.07 16 20 C -0.11 -2.14 10.05 22.26 0.22 -1.92 16 21 C -0.12 -2.83 9.83 22.29 0.22 -2.61 16 22 C -0.06 -1.72 6.31 22.32 0.14 -1.58 16 23 Cl -0.09 -2.84 27.04 -2.72 -0.07 -2.91 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H 0.34 14.12 7.61 -89.70 -0.68 13.43 16 28 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.09 2.31 6.84 -2.38 -0.02 2.30 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.14 3.59 7.69 -2.91 -0.02 3.57 16 33 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -65.92 301.38 1.75 -64.17 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.41 Total: 18.69 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 2.65 Total: -40.74 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -3.26 Total: -85.94 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -65.92 1.75 -64.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.824 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds