Wall clock time and date at job start Mon Mar 30 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46824 * 119.99758 * 3 2 1 6 6 H 1.48498 * 109.46963 * 240.00066 * 3 2 1 7 7 C 1.37870 * 119.99986 * 179.72219 * 2 1 3 8 8 H 1.08007 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47554 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.90212 * 52.99111 * 10 9 7 12 12 N 1.47900 * 109.91853 * 291.68114 * 10 9 7 13 13 C 1.48531 * 105.82064 * 215.31403 * 12 10 9 14 14 C 1.54938 * 103.22784 * 39.20658 * 13 12 10 15 15 C 1.53989 * 109.91885 * 174.09071 * 10 9 7 16 16 H 1.09007 * 110.31481 * 239.49815 * 15 10 9 17 17 C 1.50702 * 110.31049 * 1.66435 * 15 10 9 18 18 C 1.38230 * 120.00654 * 67.33959 * 17 15 10 19 19 C 1.38225 * 120.01454 * 179.97438 * 18 17 15 20 20 C 1.38260 * 120.02420 * 0.04429 * 19 18 17 21 21 C 1.38193 * 120.01647 * 359.97438 * 20 19 18 22 22 C 1.38335 * 120.00564 * 247.07241 * 17 15 10 23 23 Cl 1.73597 * 120.01645 * 359.97351 * 22 17 15 24 24 H 0.97005 * 119.99859 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 300.00395 * 9 7 2 26 26 H 1.09004 * 109.46941 * 60.00081 * 9 7 2 27 27 H 1.00896 * 111.00096 * 335.82875 * 12 10 9 28 28 H 1.09006 * 110.66597 * 280.77398 * 13 12 10 29 29 H 1.08998 * 110.81287 * 157.71325 * 13 12 10 30 30 H 1.08996 * 110.72478 * 204.22578 * 14 13 12 31 31 H 1.09001 * 110.87379 * 81.01076 * 14 13 12 32 32 H 1.08001 * 119.99453 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.98448 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.99053 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.00594 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6620 0.0167 11 1 2.9554 -3.5395 0.8346 12 7 2.9632 -3.7168 -1.2753 13 6 3.1772 -5.1591 -1.5587 14 6 1.8529 -5.8128 -1.0902 15 6 1.4917 -4.9959 0.1716 16 1 1.8260 -5.5175 1.0684 17 6 0.0054 -4.7533 0.2299 18 6 -0.6625 -4.2831 -0.8853 19 6 -2.0258 -4.0611 -0.8322 20 6 -2.7219 -4.3082 0.3366 21 6 -2.0552 -4.7778 1.4522 22 6 -0.6915 -5.0063 1.3977 23 17 0.1453 -5.6040 2.7963 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6240 -2.5528 0.9015 26 1 0.6248 -2.5610 -0.8785 27 1 2.4235 -3.2806 -2.0077 28 1 4.0201 -5.5431 -0.9841 29 1 3.3323 -5.3254 -2.6247 30 1 2.0083 -6.8620 -0.8392 31 1 1.0788 -5.7101 -1.8508 32 1 -0.1193 -4.0900 -1.7985 33 1 -2.5472 -3.6941 -1.7039 34 1 -3.7871 -4.1341 0.3776 35 1 -2.5993 -4.9712 2.3649 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:54 Heat of formation + Delta-G solvation = 10.730451 kcal Electronic energy + Delta-G solvation = -18396.224005 eV Core-core repulsion = 15612.173181 eV Total energy + Delta-G solvation = -2784.050824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01369 -37.60781 -36.17102 -33.32770 -32.00190 -30.47591 -30.03930 -27.91181 -25.69730 -23.08728 -22.39879 -21.97563 -20.84826 -19.03432 -17.07326 -16.48684 -15.62540 -15.33758 -14.76974 -14.37458 -13.73783 -13.63396 -13.58823 -13.56307 -13.13003 -12.48897 -12.04482 -11.74037 -11.48865 -11.23702 -11.11638 -11.03510 -10.88600 -10.69223 -10.59918 -10.41268 -10.18138 -10.01314 -9.61733 -8.62899 -8.43872 -8.25933 -8.20733 -7.83212 -6.26206 -3.93526 1.46984 1.56966 2.41248 3.49881 3.51631 3.70034 3.90946 4.60723 4.72278 4.84479 5.01546 5.19136 5.26106 5.37866 5.48254 5.54327 5.56221 5.64423 5.75893 5.90533 5.93497 6.01988 6.13910 6.22139 6.29147 6.46122 6.54920 6.66475 6.72813 6.78710 7.08244 7.22578 7.43629 7.65628 8.04980 8.32145 8.60620 8.99078 9.76540 11.13956 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.007972 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.689406 B = 3511.325932 C = 4138.998572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.589 4.589 8 H 0.053 0.947 9 C 0.008 3.992 10 C 0.096 3.904 11 H 0.076 0.924 12 N -0.657 5.657 13 C 0.039 3.961 14 C -0.150 4.150 15 C -0.091 4.091 16 H 0.086 0.914 17 C -0.039 4.039 18 C -0.089 4.089 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.035 4.035 23 Cl -0.078 7.078 24 H 0.267 0.733 25 H 0.014 0.986 26 H 0.017 0.983 27 H 0.339 0.661 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -12.750 -0.928 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.627 4.627 8 H 0.072 0.928 9 C -0.029 4.029 10 C -0.014 4.014 11 H 0.094 0.906 12 N -0.284 5.284 13 C -0.091 4.091 14 C -0.189 4.189 15 C -0.111 4.111 16 H 0.104 0.896 17 C -0.040 4.040 18 C -0.107 4.107 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.062 4.062 23 Cl -0.049 7.049 24 H 0.078 0.922 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.156 0.844 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.908 -10.970 -0.553 11.148 hybrid contribution -0.692 -1.954 0.031 2.074 sum -2.600 -12.924 -0.521 13.193 Atomic orbital electron populations 1.70782 1.06856 1.30450 1.47157 1.25759 0.96538 1.02549 0.94140 0.83579 0.74861 0.75559 0.76485 1.21079 1.21619 1.21528 1.22058 0.94586 0.91549 1.54524 0.92833 1.19751 0.93938 0.92905 0.96333 1.22356 0.94392 0.92527 0.92090 0.90551 1.62736 1.49638 1.11000 1.05069 1.23120 0.96254 0.89728 1.00001 1.23271 0.99124 0.99459 0.97055 1.21775 0.90826 0.99201 0.99325 0.89617 1.19509 0.95452 0.97182 0.91879 1.20879 0.94029 0.97729 0.98073 1.21148 0.94312 0.99269 0.98314 1.20964 0.99895 0.99974 0.92666 1.20902 0.92278 1.00785 0.99285 1.20728 0.92679 1.04366 0.88405 1.98324 1.78703 1.86692 1.41219 0.92232 0.96837 0.96541 0.84387 0.90873 0.91448 0.91524 0.91389 0.85640 0.85787 0.85625 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.90 13.65 55.43 0.76 -27.15 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.59 -16.60 8.93 -34.44 -0.31 -16.91 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.01 0.19 2.30 -27.88 -0.06 0.12 16 10 C 0.10 1.98 3.29 -66.65 -0.22 1.76 16 11 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 12 N -0.66 -12.43 7.21 -103.13 -0.74 -13.17 16 13 C 0.04 0.58 7.55 -1.90 -0.01 0.56 16 14 C -0.15 -2.15 6.45 -24.87 -0.16 -2.31 16 15 C -0.09 -1.56 3.06 -90.42 -0.28 -1.84 16 16 H 0.09 1.45 6.32 -51.93 -0.33 1.12 16 17 C -0.04 -0.69 3.25 -104.59 -0.34 -1.03 16 18 C -0.09 -1.51 6.29 -39.59 -0.25 -1.76 16 19 C -0.11 -1.75 10.05 -39.58 -0.40 -2.14 16 20 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 21 C -0.11 -1.75 9.83 -39.55 -0.39 -2.14 16 22 C -0.04 -0.60 6.30 -39.49 -0.25 -0.85 16 23 Cl -0.08 -1.23 27.06 -51.86 -1.40 -2.64 16 24 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 25 H 0.01 0.37 7.10 -51.93 -0.37 0.00 16 26 H 0.02 0.41 5.12 -51.93 -0.27 0.15 16 27 H 0.34 6.59 8.30 -39.29 -0.33 6.26 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 32 H 0.13 2.09 6.62 -52.49 -0.35 1.74 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 293.48 15.07 4.42 4.42 Total: -1.00 -30.55 293.48 -9.64 -40.19 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.42 Total: 5.93 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -3.16 Total: -28.35 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.01 Total: -40.32 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.40 Total: -2.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.55 -9.64 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.916 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds