Wall clock time and date at job start Mon Mar 30 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46824 * 119.99758 * 3 2 1 6 6 H 1.48498 * 109.46963 * 240.00066 * 3 2 1 7 7 C 1.37870 * 119.99986 * 179.72219 * 2 1 3 8 8 H 1.08007 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47554 * 179.97438 * 9 7 2 11 11 H 1.09007 * 109.90212 * 52.99111 * 10 9 7 12 12 N 1.47900 * 109.91853 * 291.68114 * 10 9 7 13 13 C 1.48531 * 105.82064 * 215.31403 * 12 10 9 14 14 C 1.54938 * 103.22784 * 39.20658 * 13 12 10 15 15 C 1.53989 * 109.91885 * 174.09071 * 10 9 7 16 16 H 1.09007 * 110.31481 * 239.49815 * 15 10 9 17 17 C 1.50702 * 110.31049 * 1.66435 * 15 10 9 18 18 C 1.38230 * 120.00654 * 67.33959 * 17 15 10 19 19 C 1.38225 * 120.01454 * 179.97438 * 18 17 15 20 20 C 1.38260 * 120.02420 * 0.04429 * 19 18 17 21 21 C 1.38193 * 120.01647 * 359.97438 * 20 19 18 22 22 C 1.38335 * 120.00564 * 247.07241 * 17 15 10 23 23 Cl 1.73597 * 120.01645 * 359.97351 * 22 17 15 24 24 H 0.97005 * 119.99859 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47103 * 300.00395 * 9 7 2 26 26 H 1.09004 * 109.46941 * 60.00081 * 9 7 2 27 27 H 1.00896 * 111.00096 * 335.82875 * 12 10 9 28 28 H 1.09006 * 110.66597 * 280.77398 * 13 12 10 29 29 H 1.08998 * 110.81287 * 157.71325 * 13 12 10 30 30 H 1.08996 * 110.72478 * 204.22578 * 14 13 12 31 31 H 1.09001 * 110.87379 * 81.01076 * 14 13 12 32 32 H 1.08001 * 119.99453 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.98448 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.99053 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.00594 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6620 0.0167 11 1 2.9554 -3.5395 0.8346 12 7 2.9632 -3.7168 -1.2753 13 6 3.1772 -5.1591 -1.5587 14 6 1.8529 -5.8128 -1.0902 15 6 1.4917 -4.9959 0.1716 16 1 1.8260 -5.5175 1.0684 17 6 0.0054 -4.7533 0.2299 18 6 -0.6625 -4.2831 -0.8853 19 6 -2.0258 -4.0611 -0.8322 20 6 -2.7219 -4.3082 0.3366 21 6 -2.0552 -4.7778 1.4522 22 6 -0.6915 -5.0063 1.3977 23 17 0.1453 -5.6040 2.7963 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6240 -2.5528 0.9015 26 1 0.6248 -2.5610 -0.8785 27 1 2.4235 -3.2806 -2.0077 28 1 4.0201 -5.5431 -0.9841 29 1 3.3323 -5.3254 -2.6247 30 1 2.0083 -6.8620 -0.8392 31 1 1.0788 -5.7101 -1.8508 32 1 -0.1193 -4.0900 -1.7985 33 1 -2.5472 -3.6941 -1.7039 34 1 -3.7871 -4.1341 0.3776 35 1 -2.5993 -4.9712 2.3649 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289534.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:53 Heat of formation + Delta-G solvation = -7.427323 kcal Electronic energy + Delta-G solvation = -18397.011385 eV Core-core repulsion = 15612.173181 eV Total energy + Delta-G solvation = -2784.838204 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35632 -38.93991 -37.42197 -35.41910 -33.31255 -31.79699 -31.67390 -29.26814 -27.46785 -24.89264 -23.77247 -23.32003 -22.23905 -20.45838 -19.00412 -17.89238 -16.99193 -16.74166 -16.08926 -15.71191 -15.61119 -15.30891 -14.99359 -14.82087 -14.41707 -14.24735 -13.62413 -13.22828 -12.99514 -12.71093 -12.53800 -12.40247 -12.34161 -12.21798 -12.07373 -11.99240 -11.78287 -11.66573 -11.20454 -10.54730 -10.47200 -9.76383 -9.66515 -9.25039 -8.56787 -6.24316 0.21773 0.32892 1.15022 1.53040 1.60717 1.79866 2.59827 2.66571 3.22655 3.37302 3.58832 3.74909 3.95266 4.07458 4.10700 4.26944 4.35085 4.36970 4.44583 4.63223 4.68940 4.75073 4.86751 4.94344 4.99275 5.03088 5.18960 5.26847 5.28499 5.43214 5.48840 5.57321 5.87809 6.01818 6.19131 6.32417 6.51691 6.73493 7.53088 8.83917 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.007972 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.689406 B = 3511.325932 C = 4138.998572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.036 4.036 3 Si 1.110 2.890 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.042 0.958 9 C 0.025 3.975 10 C 0.102 3.898 11 H 0.050 0.950 12 N -0.671 5.671 13 C 0.042 3.958 14 C -0.139 4.139 15 C -0.085 4.085 16 H 0.085 0.915 17 C -0.058 4.058 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.054 4.054 23 Cl -0.075 7.075 24 H 0.256 0.744 25 H -0.017 1.017 26 H 0.015 0.985 27 H 0.335 0.665 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -13.442 -1.504 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.234 4.234 3 Si 0.933 3.067 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.639 4.639 8 H 0.061 0.939 9 C -0.012 4.012 10 C -0.008 4.008 11 H 0.068 0.932 12 N -0.299 5.299 13 C -0.087 4.087 14 C -0.178 4.178 15 C -0.106 4.106 16 H 0.104 0.896 17 C -0.058 4.058 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.081 4.081 23 Cl -0.046 7.046 24 H 0.066 0.934 25 H 0.001 0.999 26 H 0.033 0.967 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.970 -11.697 -1.131 11.915 hybrid contribution -0.689 -1.776 0.232 1.919 sum -2.659 -13.473 -0.898 13.762 Atomic orbital electron populations 1.70903 1.07668 1.29812 1.49218 1.27110 0.96668 1.06153 0.93429 0.83008 0.74146 0.71929 0.77627 1.21083 1.20331 1.19669 1.22418 0.94327 0.93379 1.53753 0.93922 1.19499 0.93928 0.93163 0.94613 1.22057 0.93289 0.93042 0.92398 0.93179 1.62668 1.49110 1.14072 1.04067 1.23230 0.96644 0.87005 1.01838 1.23218 0.98808 1.00166 0.95632 1.21654 0.90541 0.97496 1.00867 0.89632 1.19608 0.95572 0.98200 0.92466 1.20993 0.94931 0.98456 0.97969 1.21493 0.94017 0.98830 0.99569 1.21380 1.01486 0.98582 0.91887 1.21266 0.91901 1.00164 1.00489 1.20984 0.93575 1.05015 0.88499 1.98315 1.78763 1.86637 1.40895 0.93426 0.99912 0.96732 0.84904 0.90176 0.88849 0.89182 0.90850 0.85933 0.83858 0.82444 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.65 21.44 0.29 -57.55 16 2 C -0.04 -2.10 5.46 84.65 0.46 -1.64 16 3 Si 1.11 51.93 29.90 68.60 2.05 53.98 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.60 -34.46 8.93 25.60 0.23 -34.23 16 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.02 1.26 2.30 29.85 0.07 1.33 16 10 C 0.10 4.28 3.29 45.06 0.15 4.43 16 11 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 12 N -0.67 -25.15 7.21 -480.21 -3.46 -28.61 16 13 C 0.04 1.15 7.55 86.65 0.65 1.81 16 14 C -0.14 -3.73 6.45 31.80 0.21 -3.53 16 15 C -0.09 -2.90 3.06 -10.66 -0.03 -2.93 16 16 H 0.09 2.87 6.32 -2.38 -0.02 2.86 16 17 C -0.06 -2.00 3.25 -19.84 -0.06 -2.07 16 18 C -0.11 -3.56 6.29 22.26 0.14 -3.42 16 19 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 20 C -0.12 -3.18 10.05 22.26 0.22 -2.96 16 21 C -0.12 -3.54 9.83 22.29 0.22 -3.32 16 22 C -0.05 -1.82 6.30 22.33 0.14 -1.68 16 23 Cl -0.07 -2.34 27.06 -2.72 -0.07 -2.41 16 24 H 0.26 15.91 7.22 -92.70 -0.67 15.25 16 25 H -0.02 -0.97 7.10 -2.38 -0.02 -0.99 16 26 H 0.01 0.75 5.12 -2.39 -0.01 0.74 16 27 H 0.33 12.94 8.30 -89.70 -0.74 12.20 16 28 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.90 6.34 -2.39 -0.02 1.89 16 32 H 0.12 4.09 6.62 -2.91 -0.02 4.07 16 33 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -66.10 293.48 1.88 -64.22 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.46 Total: 22.00 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 2.62 Total: -51.63 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -3.17 Total: -86.16 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.41 kcal Total: -66.10 1.88 -64.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289534.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.792 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds