Wall clock time and date at job start Mon Mar 30 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00149 * 2 1 4 4 O 1.21280 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99724 * 179.97438 * 3 2 1 6 6 S 1.81404 * 109.46981 * 180.02562 * 5 3 2 7 7 C 1.81391 * 103.00367 * 180.02562 * 6 5 3 8 8 H 1.09003 * 109.47500 * 305.00093 * 7 6 5 9 9 C 1.50701 * 109.47249 * 64.99825 * 7 6 5 10 10 H 1.08004 * 119.99991 * 29.19951 * 9 7 6 11 11 C 1.37883 * 120.00235 * 209.20002 * 9 7 6 12 12 N 1.31506 * 119.99743 * 6.76929 * 11 9 7 13 13 Si 1.86799 * 119.99781 * 186.77181 * 11 9 7 14 14 H 1.48498 * 109.47409 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47033 * 119.99979 * 13 11 9 16 16 H 1.48502 * 109.46907 * 239.99880 * 13 11 9 17 17 C 1.50701 * 109.47682 * 185.00153 * 7 6 5 18 18 C 1.38238 * 119.99389 * 301.13116 * 17 7 6 19 19 C 1.38237 * 119.99305 * 179.80571 * 18 17 7 20 20 C 1.38231 * 120.00297 * 0.39932 * 19 18 17 21 21 C 1.38231 * 120.00061 * 359.85540 * 20 19 18 22 22 C 1.38227 * 120.00381 * 121.40108 * 17 7 6 23 23 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47490 * 300.00208 * 1 2 3 25 25 H 1.08999 * 109.46610 * 60.00333 * 1 2 3 26 26 H 0.97004 * 119.99759 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47286 * 60.00676 * 5 3 2 28 28 H 1.09001 * 109.47556 * 299.99531 * 5 3 2 29 29 H 0.97006 * 120.00202 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.00232 * 359.97438 * 18 17 7 31 31 H 1.08005 * 119.99782 * 180.22881 * 19 18 17 32 32 H 1.08002 * 120.00206 * 179.83014 * 20 19 18 33 33 H 1.07998 * 120.00208 * 179.97438 * 21 20 19 34 34 H 1.08009 * 120.00044 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 16 4.2507 2.8773 0.0012 7 6 6.0530 2.6729 0.0011 8 1 6.3477 2.0460 0.8426 9 6 6.4845 2.0201 -1.2869 10 1 5.9078 2.1697 -2.1878 11 6 7.6154 1.2318 -1.3152 12 7 8.2420 0.9406 -0.1963 13 14 8.2573 0.5777 -2.9429 14 1 7.3790 1.0451 -4.0453 15 1 9.6390 1.0746 -3.1657 16 1 8.2642 -0.9069 -2.9116 17 6 6.7118 4.0226 0.1254 18 6 6.4672 5.0007 -0.8204 19 6 7.0684 6.2401 -0.7041 20 6 7.9204 6.4986 0.3533 21 6 8.1690 5.5188 1.2961 22 6 7.5648 4.2807 1.1820 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.9500 -0.8401 0.0004 27 1 4.0095 0.6531 -0.8892 28 1 4.0089 0.6535 0.8908 29 1 9.0379 0.3863 -0.2162 30 1 5.8045 4.7975 -1.6485 31 1 6.8745 7.0056 -1.4409 32 1 8.3922 7.4660 0.4426 33 1 8.8350 5.7206 2.1219 34 1 7.7590 3.5151 1.9188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304173082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:38 Heat of formation + Delta-G solvation = -19.956384 kcal Electronic energy + Delta-G solvation = -17206.238684 eV Core-core repulsion = 14422.900886 eV Total energy + Delta-G solvation = -2783.337798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.19979 -38.29582 -34.39437 -33.72808 -31.10948 -30.04805 -29.95077 -27.20817 -25.84220 -23.46500 -21.67006 -20.64184 -20.20288 -17.03466 -16.67287 -16.15564 -15.79719 -15.29196 -15.10105 -14.52632 -14.17870 -13.80950 -13.41734 -13.35042 -12.90434 -12.60834 -12.29921 -12.16261 -12.07499 -11.74477 -11.58256 -11.11542 -10.99319 -10.42712 -10.31695 -10.22916 -9.62805 -9.60370 -9.03030 -8.78514 -8.68220 -8.05745 -7.66089 -6.70050 -6.20040 -4.33665 2.10204 2.27489 2.69689 2.92600 3.15227 3.25414 3.29380 3.56029 3.80709 4.23835 4.80462 5.00955 5.07344 5.31476 5.47640 5.65312 5.69883 5.73303 5.77022 5.83211 6.00960 6.14560 6.40347 6.48075 6.49570 6.77724 6.87964 7.09119 7.29173 7.35767 7.57238 7.62303 7.70422 7.83671 7.97919 8.44191 8.71004 9.27474 10.76066 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.007034 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.984758 B = 3979.896053 C = 5310.495646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.741 5.741 3 C 0.529 3.471 4 O -0.521 6.521 5 C -0.107 4.107 6 S -0.255 6.255 7 C 0.112 3.888 8 H 0.078 0.922 9 C -0.511 4.511 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.877 5.877 13 Si 0.895 3.105 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.013 4.013 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.147 4.147 21 C -0.130 4.130 22 C -0.108 4.108 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.402 0.598 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.266 0.734 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -1.435 1.440 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.394 5.394 3 C 0.314 3.686 4 O -0.396 6.396 5 C -0.258 4.258 6 S -0.023 6.023 7 C -0.015 4.015 8 H 0.097 0.903 9 C -0.551 4.551 10 H 0.089 0.911 11 C -0.133 4.133 12 N -0.513 5.513 13 Si 0.721 3.279 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.209 1.209 17 C -0.017 4.017 18 C -0.121 4.121 19 C -0.150 4.150 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.128 4.128 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.236 0.764 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.159 0.151 1.539 7.324 hybrid contribution 1.607 -2.080 -0.900 2.778 sum -5.552 -1.929 0.639 5.912 Atomic orbital electron populations 1.21471 0.79961 1.01759 1.02168 1.45759 1.07417 1.08778 1.77474 1.20220 0.89442 0.83545 0.75369 1.90703 1.70005 1.31029 1.47866 1.23110 0.93439 1.02265 1.06994 1.86661 1.10911 1.06732 1.98032 1.20026 0.86247 0.92986 1.02274 0.90346 1.21260 1.10687 1.28807 0.94312 0.91115 1.25055 0.96432 0.95064 0.96718 1.69907 1.19049 1.36265 1.26056 0.86474 0.79258 0.78377 0.83743 1.19284 1.20610 1.20852 1.19969 0.95027 0.94342 0.92317 1.21010 0.99590 0.92604 0.98936 1.20986 0.98594 0.97106 0.98290 1.20851 1.00652 0.98746 0.96306 1.20951 1.00602 0.94078 0.99147 1.20991 0.97601 0.96045 0.98128 0.90957 0.92451 0.92433 0.76445 0.86936 0.88222 0.92406 0.86231 0.87308 0.87520 0.87324 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.70 59.85 0.64 1.58 16 2 N -0.74 -9.26 5.71 -67.08 -0.38 -9.64 16 3 C 0.53 9.15 7.85 -10.98 -0.09 9.06 16 4 O -0.52 -11.01 15.87 5.56 0.09 -10.92 16 5 C -0.11 -1.96 6.21 36.01 0.22 -1.74 16 6 S -0.25 -5.66 19.84 -107.50 -2.13 -7.79 16 7 C 0.11 2.66 2.48 -29.03 -0.07 2.59 16 8 H 0.08 2.02 7.12 -51.92 -0.37 1.65 16 9 C -0.51 -12.92 7.60 -34.44 -0.26 -13.19 16 10 H 0.07 1.83 7.82 -52.48 -0.41 1.41 16 11 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 12 N -0.88 -23.17 12.85 55.43 0.71 -22.46 16 13 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.01 -0.31 4.77 -104.63 -0.50 -0.81 16 18 C -0.10 -2.20 8.88 -39.58 -0.35 -2.56 16 19 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 20 C -0.15 -2.62 10.05 -39.59 -0.40 -3.02 16 21 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 22 C -0.11 -2.31 9.67 -39.59 -0.38 -2.70 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.40 3.82 8.83 -40.82 -0.36 3.46 16 27 H 0.11 2.04 8.00 -51.93 -0.42 1.63 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.12 2.60 8.03 -52.49 -0.42 2.18 16 31 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.12 2.47 7.95 -52.48 -0.42 2.05 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -30.26 311.69 -8.61 -38.87 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.49 Total: 6.89 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.08 Total: -14.67 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.33 Total: -32.10 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -2.13 Total: -7.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.26 -8.61 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304173082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds