Wall clock time and date at job start Mon Mar 30 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81412 * 109.46943 * 2 1 4 4 C 1.76203 * 102.99823 * 180.02562 * 3 2 1 5 5 C 1.39105 * 120.00306 * 359.73121 * 4 3 2 6 6 C 1.38199 * 120.22105 * 179.72389 * 5 4 3 7 7 C 1.38021 * 120.24054 * 0.54777 * 6 5 4 8 8 C 1.39665 * 120.00959 * 359.72154 * 7 6 5 9 9 C 1.47742 * 120.11162 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00481 * 318.61504 * 9 8 7 11 11 N 1.34778 * 119.99692 * 138.62073 * 9 8 7 12 12 C 1.46505 * 120.00009 * 4.66081 * 11 9 8 13 13 C 1.36874 * 120.00126 * 184.66418 * 11 9 8 14 14 H 1.08006 * 119.99536 * 21.50880 * 13 11 9 15 15 C 1.39043 * 120.00378 * 201.51009 * 13 11 9 16 16 N 1.31366 * 119.99665 * 13.35371 * 15 13 11 17 17 Si 1.86800 * 120.00392 * 193.34801 * 15 13 11 18 18 H 1.48494 * 109.47050 * 89.99975 * 17 15 13 19 19 H 1.48499 * 109.47292 * 210.00003 * 17 15 13 20 20 H 1.48497 * 109.46996 * 330.00313 * 17 15 13 21 21 C 1.38676 * 120.00398 * 179.97438 * 4 3 2 22 22 H 1.08996 * 109.46882 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46934 * 299.99492 * 1 2 3 24 24 H 1.08997 * 109.47400 * 59.99776 * 1 2 3 25 25 H 1.08997 * 109.47400 * 120.00224 * 2 1 3 26 26 H 1.09004 * 109.46934 * 240.00508 * 2 1 3 27 27 H 1.07992 * 119.88976 * 359.96940 * 5 4 3 28 28 H 1.08002 * 119.87884 * 180.25784 * 6 5 4 29 29 H 1.08001 * 119.99538 * 179.75396 * 7 6 5 30 30 H 1.09001 * 109.46747 * 84.78263 * 12 11 9 31 31 H 1.09003 * 109.46927 * 204.78136 * 12 11 9 32 32 H 1.08996 * 109.46919 * 324.78613 * 12 11 9 33 33 H 0.97001 * 119.99946 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.12147 * 359.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7104 0.0000 4 6 3.8855 1.5118 -0.0008 5 6 4.4409 0.2364 0.0045 6 6 5.8134 0.0754 -0.0019 7 6 6.6427 1.1787 -0.0020 8 6 6.0957 2.4638 -0.0016 9 6 6.9813 3.6463 -0.0024 10 8 7.9787 3.6595 0.6930 11 7 6.6836 4.7107 -0.7738 12 6 5.4307 4.7377 -1.5327 13 6 7.5517 5.7663 -0.8482 14 1 8.5927 5.6281 -0.5955 15 6 7.0936 7.0163 -1.2490 16 7 5.8032 7.2566 -1.3029 17 14 8.3128 8.3542 -1.7106 18 1 8.6105 8.2728 -3.1631 19 1 7.7303 9.6840 -1.3984 20 1 9.5670 8.1691 -0.9372 21 6 4.7099 2.6269 -0.0015 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.7973 -0.6308 0.0095 28 1 6.2387 -0.9173 -0.0020 29 1 7.7148 1.0483 -0.0030 30 1 4.6268 5.1034 -0.8939 31 1 5.5409 5.3988 -2.3924 32 1 5.1924 3.7312 -1.8765 33 1 5.4835 8.1288 -1.5822 34 1 4.2809 3.6181 -0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343668146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:00 Heat of formation + Delta-G solvation = -0.616420 kcal Electronic energy + Delta-G solvation = -17420.220960 eV Core-core repulsion = 14637.721805 eV Total energy + Delta-G solvation = -2782.499155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40367 -37.44925 -34.75677 -33.14945 -31.95548 -30.75274 -30.49461 -26.36638 -25.08439 -24.01007 -22.67775 -22.01458 -19.64585 -17.21731 -16.76172 -16.23925 -15.93694 -15.06707 -15.01442 -14.80825 -14.45118 -14.08837 -13.83300 -13.22711 -12.87253 -12.63386 -12.42426 -12.18853 -11.80843 -11.72900 -11.65405 -11.30175 -11.08143 -10.93841 -10.70375 -10.37560 -10.35981 -10.05063 -9.51717 -9.05032 -8.66433 -8.36859 -7.76778 -7.25475 -6.40063 -3.91055 1.34497 1.55244 1.57240 2.48277 3.14064 3.22942 3.28552 3.64402 4.08065 4.27728 4.67897 4.71581 4.78512 5.02227 5.10102 5.14214 5.20870 5.46482 5.53442 5.55524 5.69164 5.74205 5.81931 5.99286 6.17465 6.38138 6.43799 6.61849 6.81496 6.84886 7.10883 7.20098 7.49962 8.06245 8.42662 9.11575 9.33834 9.92262 10.63641 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.005059 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.533578 B = 5533.194252 C = 6393.668229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 S -0.121 6.121 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.084 4.084 8 C -0.072 4.072 9 C 0.471 3.529 10 O -0.587 6.587 11 N -0.428 5.428 12 C 0.104 3.896 13 C -0.305 4.305 14 H 0.102 0.898 15 C 0.031 3.969 16 N -0.874 5.874 17 Si 0.930 3.070 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.078 4.078 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.270 0.730 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 -12.963 -0.960 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.261 4.261 3 S 0.121 5.879 4 C -0.205 4.205 5 C -0.158 4.158 6 C -0.131 4.131 7 C -0.105 4.105 8 C -0.077 4.077 9 C 0.260 3.740 10 O -0.473 6.473 11 N -0.145 5.145 12 C -0.039 4.039 13 C -0.433 4.433 14 H 0.120 0.880 15 C -0.173 4.173 16 N -0.513 5.513 17 Si 0.756 3.244 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.102 4.102 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.148 -11.768 -0.699 15.555 hybrid contribution 1.148 -0.417 -0.266 1.250 sum -9.000 -12.185 -0.966 15.179 Atomic orbital electron populations 1.21506 0.92003 1.02649 1.03356 1.23567 1.00275 0.96875 1.05372 1.85596 0.98358 1.10792 1.93193 1.21533 0.96273 0.96258 1.06390 1.21100 0.95767 0.95096 1.03803 1.20899 0.92811 0.98526 1.00834 1.21243 1.00336 0.91048 0.97919 1.20270 0.93111 0.95032 0.99314 1.17912 0.87718 0.84372 0.83992 1.90614 1.29725 1.82649 1.44277 1.43533 1.18479 1.15258 1.37194 1.21822 0.86526 0.98009 0.97576 1.19747 0.92468 0.86988 1.44116 0.88000 1.25396 0.96595 0.98193 0.97107 1.69995 1.12720 1.23621 1.44926 0.85862 0.80284 0.79320 0.78914 1.20215 1.20801 1.19202 1.21355 0.92216 0.98281 0.98332 0.91014 0.91564 0.91516 0.89614 0.89574 0.86336 0.85781 0.85291 0.92814 0.90107 0.94898 0.91941 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.11 -1.07 5.05 37.16 0.19 -0.88 16 3 S -0.12 -1.66 21.92 -107.50 -2.36 -4.01 16 4 C -0.09 -1.48 6.11 -39.10 -0.24 -1.72 16 5 C -0.13 -1.88 9.36 -39.27 -0.37 -2.25 16 6 C -0.11 -1.61 10.02 -39.68 -0.40 -2.00 16 7 C -0.08 -1.52 9.65 -39.13 -0.38 -1.89 16 8 C -0.07 -1.51 5.16 -104.99 -0.54 -2.06 16 9 C 0.47 12.22 7.27 -12.38 -0.09 12.13 16 10 O -0.59 -17.09 16.66 5.28 0.09 -17.00 16 11 N -0.43 -11.36 3.01 -123.31 -0.37 -11.73 16 12 C 0.10 2.42 7.21 59.85 0.43 2.85 16 13 C -0.31 -8.61 9.27 -15.00 -0.14 -8.75 16 14 H 0.10 2.98 7.44 -52.48 -0.39 2.59 16 15 C 0.03 0.83 5.04 -17.45 -0.09 0.74 16 16 N -0.87 -23.23 10.69 55.50 0.59 -22.64 16 17 Si 0.93 20.62 29.57 -169.99 -5.03 15.60 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.08 -1.49 7.36 -38.93 -0.29 -1.77 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.76 7.73 -51.93 -0.40 0.35 16 26 H 0.09 0.75 7.75 -51.92 -0.40 0.35 16 27 H 0.12 1.31 5.86 -52.49 -0.31 1.00 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 31 H 0.08 1.96 6.53 -51.93 -0.34 1.62 16 32 H 0.03 0.68 5.98 -51.93 -0.31 0.37 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.14 2.81 5.50 -52.49 -0.29 2.52 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -31.21 296.87 -8.17 -39.39 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.03 Total: 2.21 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.54 Total: -6.29 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.22 Total: -34.37 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.09 Total: -17.00 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.36 Total: -4.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.21 -8.17 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343668146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds