Wall clock time and date at job start Mon Mar 30 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81412 * 109.46943 * 2 1 4 4 C 1.76203 * 102.99823 * 180.02562 * 3 2 1 5 5 C 1.39105 * 120.00306 * 359.73121 * 4 3 2 6 6 C 1.38199 * 120.22105 * 179.72389 * 5 4 3 7 7 C 1.38021 * 120.24054 * 0.54777 * 6 5 4 8 8 C 1.39665 * 120.00959 * 359.72154 * 7 6 5 9 9 C 1.47742 * 120.11162 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00481 * 318.61504 * 9 8 7 11 11 N 1.34778 * 119.99692 * 138.62073 * 9 8 7 12 12 C 1.46505 * 120.00009 * 4.66081 * 11 9 8 13 13 C 1.36874 * 120.00126 * 184.66418 * 11 9 8 14 14 H 1.08006 * 119.99536 * 21.50880 * 13 11 9 15 15 C 1.39043 * 120.00378 * 201.51009 * 13 11 9 16 16 N 1.31366 * 119.99665 * 13.35371 * 15 13 11 17 17 Si 1.86800 * 120.00392 * 193.34801 * 15 13 11 18 18 H 1.48494 * 109.47050 * 89.99975 * 17 15 13 19 19 H 1.48499 * 109.47292 * 210.00003 * 17 15 13 20 20 H 1.48497 * 109.46996 * 330.00313 * 17 15 13 21 21 C 1.38676 * 120.00398 * 179.97438 * 4 3 2 22 22 H 1.08996 * 109.46882 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46934 * 299.99492 * 1 2 3 24 24 H 1.08997 * 109.47400 * 59.99776 * 1 2 3 25 25 H 1.08997 * 109.47400 * 120.00224 * 2 1 3 26 26 H 1.09004 * 109.46934 * 240.00508 * 2 1 3 27 27 H 1.07992 * 119.88976 * 359.96940 * 5 4 3 28 28 H 1.08002 * 119.87884 * 180.25784 * 6 5 4 29 29 H 1.08001 * 119.99538 * 179.75396 * 7 6 5 30 30 H 1.09001 * 109.46747 * 84.78263 * 12 11 9 31 31 H 1.09003 * 109.46927 * 204.78136 * 12 11 9 32 32 H 1.08996 * 109.46919 * 324.78613 * 12 11 9 33 33 H 0.97001 * 119.99946 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.12147 * 359.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7104 0.0000 4 6 3.8855 1.5118 -0.0008 5 6 4.4409 0.2364 0.0045 6 6 5.8134 0.0754 -0.0019 7 6 6.6427 1.1787 -0.0020 8 6 6.0957 2.4638 -0.0016 9 6 6.9813 3.6463 -0.0024 10 8 7.9787 3.6595 0.6930 11 7 6.6836 4.7107 -0.7738 12 6 5.4307 4.7377 -1.5327 13 6 7.5517 5.7663 -0.8482 14 1 8.5927 5.6281 -0.5955 15 6 7.0936 7.0163 -1.2490 16 7 5.8032 7.2566 -1.3029 17 14 8.3128 8.3542 -1.7106 18 1 8.6105 8.2728 -3.1631 19 1 7.7303 9.6840 -1.3984 20 1 9.5670 8.1691 -0.9372 21 6 4.7099 2.6269 -0.0015 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.7973 -0.6308 0.0095 28 1 6.2387 -0.9173 -0.0020 29 1 7.7148 1.0483 -0.0030 30 1 4.6268 5.1034 -0.8939 31 1 5.5409 5.3988 -2.3924 32 1 5.1924 3.7312 -1.8765 33 1 5.4835 8.1288 -1.5822 34 1 4.2809 3.6181 -0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343668146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:00 Heat of formation + Delta-G solvation = -19.016957 kcal Electronic energy + Delta-G solvation = -17421.018867 eV Core-core repulsion = 14637.721805 eV Total energy + Delta-G solvation = -2783.297062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08562 -39.09647 -36.82464 -34.03589 -33.71715 -32.09339 -31.99222 -28.32285 -26.94014 -24.98605 -24.19983 -23.18282 -21.34098 -19.14397 -18.45764 -17.58768 -17.39032 -16.78184 -16.29227 -15.99207 -15.71394 -15.64824 -15.48762 -14.64414 -14.57234 -14.00774 -13.69031 -13.53738 -13.28515 -13.18935 -13.07102 -12.68941 -12.50990 -12.41183 -12.31160 -12.15763 -12.01001 -11.09097 -11.02603 -10.78408 -10.54673 -9.90205 -9.83408 -8.44862 -8.37176 -6.06293 -0.03199 0.24618 0.52389 1.36581 1.39071 1.50445 1.52605 1.94504 2.22777 2.68330 2.95320 3.06978 3.75669 3.88943 4.03062 4.04578 4.10792 4.26249 4.43193 4.51877 4.56412 4.65851 4.82397 4.89953 4.91122 4.93961 5.12789 5.23497 5.26854 5.32062 5.36316 5.45052 5.82175 5.99988 6.37691 7.04235 7.30906 7.89099 8.59407 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.005059 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.533578 B = 5533.194252 C = 6393.668229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 S -0.153 6.153 4 C -0.092 4.092 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.096 4.096 8 C -0.103 4.103 9 C 0.462 3.538 10 O -0.634 6.634 11 N -0.444 5.444 12 C 0.123 3.877 13 C -0.352 4.352 14 H 0.077 0.923 15 C 0.000 4.000 16 N -0.890 5.890 17 Si 0.998 3.002 18 H -0.261 1.261 19 H -0.270 1.270 20 H -0.274 1.274 21 C -0.092 4.092 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.278 0.722 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -15.477 -1.566 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.250 4.250 3 S 0.089 5.911 4 C -0.204 4.204 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.108 4.108 9 C 0.252 3.748 10 O -0.523 6.523 11 N -0.160 5.160 12 C -0.020 4.020 13 C -0.479 4.479 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.528 5.528 17 Si 0.820 3.180 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.199 1.199 21 C -0.116 4.116 22 H 0.118 0.882 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.180 0.820 28 H 0.188 0.812 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.998 -14.286 -1.324 18.702 hybrid contribution 1.545 0.214 -0.031 1.560 sum -10.453 -14.072 -1.356 17.582 Atomic orbital electron populations 1.21546 0.90617 1.04246 1.03030 1.23766 1.01213 0.93141 1.06841 1.85824 0.96679 1.15841 1.92772 1.21712 0.97478 0.96129 1.05098 1.21639 0.96169 0.95463 1.00650 1.21336 0.92640 0.99131 0.98030 1.21354 1.00799 0.90969 0.98651 1.19929 0.93278 0.94133 1.03471 1.18777 0.87670 0.85556 0.82749 1.90542 1.31954 1.83853 1.45994 1.43769 1.19096 1.15351 1.37747 1.21668 0.85040 0.98933 0.96310 1.19747 0.92114 0.88812 1.47245 0.90555 1.26228 0.98573 0.99595 0.95882 1.70063 1.13940 1.24515 1.44278 0.84877 0.77553 0.76488 0.79074 1.18615 1.19444 1.19889 1.21124 0.91703 0.98719 1.00061 0.88245 0.91984 0.91880 0.88102 0.87954 0.81964 0.81222 0.85846 0.93654 0.91533 0.92553 0.91189 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.92 71.98 0.71 -0.82 16 2 C -0.10 -1.47 5.05 71.98 0.36 -1.11 16 3 S -0.15 -3.89 21.92 -56.49 -1.24 -5.13 16 4 C -0.09 -2.78 6.11 22.58 0.14 -2.64 16 5 C -0.12 -2.75 9.36 22.47 0.21 -2.54 16 6 C -0.09 -2.32 10.02 22.21 0.22 -2.10 16 7 C -0.10 -3.42 9.65 22.56 0.22 -3.20 16 8 C -0.10 -4.49 5.16 -20.11 -0.10 -4.59 16 9 C 0.46 25.46 7.27 86.76 0.63 26.09 16 10 O -0.63 -39.50 16.66 -4.00 -0.07 -39.57 16 11 N -0.44 -24.94 3.01 -662.29 -2.00 -26.94 16 12 C 0.12 6.00 7.21 127.77 0.92 6.92 16 13 C -0.35 -20.98 9.27 84.10 0.78 -20.20 16 14 H 0.08 4.81 7.44 -2.91 -0.02 4.79 16 15 C 0.00 0.00 5.04 84.96 0.43 0.43 16 16 N -0.89 -48.38 10.69 21.68 0.23 -48.15 16 17 Si 1.00 43.06 29.57 68.60 2.03 45.09 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C -0.09 -3.56 7.36 22.69 0.17 -3.40 16 22 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 1.22 7.73 -2.39 -0.02 1.20 16 26 H 0.10 1.22 7.75 -2.39 -0.02 1.20 16 27 H 0.16 2.50 5.86 -2.91 -0.02 2.48 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.05 2.24 6.64 -2.39 -0.02 2.23 16 31 H 0.07 3.36 6.53 -2.39 -0.02 3.34 16 32 H 0.06 2.42 5.98 -2.39 -0.01 2.40 16 33 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.12 5.05 5.50 -2.91 -0.02 5.04 16 Total: -1.00 -72.99 296.87 4.76 -68.23 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.11 Total: 13.63 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.69 Total: -7.17 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.76 Total: -75.09 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.07 Total: -39.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -1.24 Total: -5.13 kcal Total: -72.99 4.76 -68.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343668146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.218 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds