Wall clock time and date at job start Mon Mar 30 2020 06:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47235 * 274.07708 * 3 2 1 5 5 H 1.48501 * 109.47093 * 34.08073 * 3 2 1 6 6 H 1.48502 * 109.47117 * 154.07946 * 3 2 1 7 7 C 1.38816 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00415 * 336.35608 * 7 2 1 9 9 N 1.36937 * 120.00295 * 156.34899 * 7 2 1 10 10 C 1.46921 * 120.63077 * 121.49301 * 9 7 2 11 11 C 1.53195 * 108.77664 * 126.37257 * 10 9 7 12 12 C 1.53040 * 109.30838 * 54.63739 * 11 10 9 13 13 C 1.53067 * 109.66105 * 298.70181 * 12 11 10 14 14 C 1.46931 * 120.63137 * 301.48099 * 9 7 2 15 15 H 1.09002 * 109.58812 * 113.69890 * 14 9 7 16 16 C 1.50693 * 109.58520 * 353.41149 * 14 9 7 17 17 C 1.38260 * 119.99508 * 311.07410 * 16 14 9 18 18 C 1.38224 * 120.02847 * 180.02562 * 17 16 14 19 19 C 1.38236 * 120.01151 * 359.68717 * 18 17 16 20 20 C 1.38334 * 119.98233 * 0.57100 * 19 18 17 21 21 Cl 1.73602 * 120.01033 * 179.72343 * 20 19 18 22 22 C 1.38188 * 119.99339 * 131.06072 * 16 14 9 23 23 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.59192 * 246.16593 * 10 9 7 25 25 H 1.09010 * 109.58691 * 6.44657 * 10 9 7 26 26 H 1.08997 * 109.49705 * 174.58712 * 11 10 9 27 27 H 1.08998 * 109.49681 * 294.68940 * 11 10 9 28 28 H 1.09007 * 109.45826 * 58.65880 * 12 11 10 29 29 H 1.09000 * 109.45934 * 178.62559 * 12 11 10 30 30 H 1.09003 * 109.38897 * 301.28007 * 13 12 11 31 31 H 1.09002 * 109.62480 * 181.17564 * 13 12 11 32 32 H 1.08004 * 119.98916 * 0.02562 * 17 16 14 33 33 H 1.08006 * 119.99324 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00684 * 180.29744 * 19 18 17 35 35 H 1.08005 * 120.00845 * 359.96798 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4114 2.0962 -1.3965 5 1 1.4934 2.6262 0.7846 6 1 3.5882 1.4168 0.6120 7 6 2.0102 -1.2022 -0.0005 8 1 1.5383 -2.0984 0.3742 9 7 3.2933 -1.2518 -0.4763 10 6 4.3933 -1.7097 0.3834 11 6 5.1420 -2.8380 -0.3330 12 6 5.5847 -2.3536 -1.7155 13 6 4.3557 -1.9838 -2.5496 14 6 3.5962 -0.8483 -1.8563 15 1 4.2121 0.0510 -1.8473 16 6 2.3122 -0.5740 -2.5957 17 6 1.2778 -1.4901 -2.5481 18 6 0.0999 -1.2394 -3.2265 19 6 -0.0469 -0.0693 -3.9478 20 6 0.9896 0.8452 -4.0002 21 17 0.8086 2.3116 -4.9117 22 6 2.1686 0.5935 -3.3211 23 1 -0.4850 0.8400 0.0004 24 1 5.0762 -0.8821 0.5751 25 1 3.9906 -2.0773 1.3273 26 1 6.0177 -3.1215 0.2508 27 1 4.4831 -3.6993 -0.4431 28 1 6.2237 -1.4772 -1.6058 29 1 6.1390 -3.1464 -2.2178 30 1 3.7053 -2.8538 -2.6410 31 1 4.6705 -1.6587 -3.5412 32 1 1.3901 -2.4021 -1.9806 33 1 -0.7076 -1.9557 -3.1893 34 1 -0.9691 0.1287 -4.4740 35 1 2.9764 1.3095 -3.3576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370211151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:24 Heat of formation + Delta-G solvation = 31.241232 kcal Electronic energy + Delta-G solvation = -18841.009412 eV Core-core repulsion = 16057.848003 eV Total energy + Delta-G solvation = -2783.161410 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.16190 -37.17461 -35.77111 -33.16470 -31.78909 -30.84057 -29.90930 -28.31819 -25.31048 -22.97457 -21.97371 -21.77303 -20.41460 -19.14751 -17.10933 -15.91176 -15.20901 -14.85598 -14.57785 -13.84640 -13.66331 -13.55727 -13.23466 -13.01354 -12.75997 -12.60394 -12.33103 -11.80074 -11.45265 -11.07535 -10.89314 -10.80362 -10.68094 -10.52929 -10.42016 -10.27596 -10.14733 -9.86106 -9.73121 -9.60525 -8.53709 -7.98798 -7.57576 -6.42454 -6.07617 -3.67982 2.08555 2.13552 2.75960 3.38747 3.51398 3.56250 4.48702 4.56117 5.04301 5.23880 5.40781 5.47501 5.54430 5.60293 5.66532 5.90785 5.93931 6.11710 6.20681 6.22259 6.29844 6.30771 6.48281 6.50036 6.57013 6.66153 6.71062 6.78500 6.80398 6.97261 7.03060 7.28396 7.54692 7.72129 8.05567 8.50082 8.99194 9.62723 10.20790 11.02013 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.009309 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.151605 B = 3007.245615 C = 3452.317268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.077 3.923 3 Si 0.851 3.149 4 H -0.265 1.265 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.288 4.288 8 H 0.067 0.933 9 N -0.598 5.598 10 C 0.143 3.857 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.126 4.126 14 C 0.205 3.795 15 H 0.031 0.969 16 C -0.050 4.050 17 C -0.015 4.015 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.054 4.054 21 Cl -0.104 7.104 22 C -0.108 4.108 23 H 0.264 0.736 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -2.323 -6.754 8.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.130 4.130 3 Si 0.678 3.322 4 H -0.190 1.190 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.416 4.416 8 H 0.085 0.915 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.165 4.165 14 C 0.100 3.900 15 H 0.049 0.951 16 C -0.051 4.051 17 C -0.034 4.034 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.080 4.080 21 Cl -0.076 7.076 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.937 -2.097 -6.805 8.665 hybrid contribution 0.300 1.423 0.142 1.461 sum 5.237 -0.674 -6.663 8.502 Atomic orbital electron populations 1.69879 1.06268 1.27120 1.47161 1.25846 0.94720 0.97831 0.94577 0.87227 0.80830 0.85118 0.78976 1.19027 1.22811 1.19686 1.18351 0.87669 0.93742 1.41846 0.91511 1.44231 1.04515 1.77925 1.05617 1.21113 0.89898 0.93423 0.93794 1.21991 0.99287 0.99956 0.96153 1.21400 0.97176 0.99893 0.96316 1.22026 0.97051 0.99841 0.97587 1.19638 0.90790 0.94252 0.85367 0.95110 1.19523 0.96835 0.93162 0.95537 1.20900 0.91312 0.99469 0.91707 1.20855 0.98060 0.96748 0.97818 1.20745 0.97127 0.94132 1.01001 1.20532 0.97068 0.88964 1.01416 1.98292 1.97866 1.37408 1.74023 1.20684 0.96365 0.97296 0.98402 0.92613 0.96515 0.91885 0.93160 0.92190 0.92869 0.93240 0.91737 0.92919 0.85251 0.86438 0.86615 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 13.95 55.49 0.77 -23.47 16 2 C 0.08 2.05 3.67 -17.43 -0.06 1.98 16 3 Si 0.85 21.58 25.76 -169.99 -4.38 17.20 16 4 H -0.26 -6.54 5.34 56.52 0.30 -6.23 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.29 -7.35 6.65 -15.06 -0.10 -7.45 16 8 H 0.07 1.87 8.06 -52.49 -0.42 1.45 16 9 N -0.60 -13.30 2.08 -166.08 -0.35 -13.64 16 10 C 0.14 2.78 6.52 -3.71 -0.02 2.76 16 11 C -0.13 -2.15 6.09 -26.61 -0.16 -2.31 16 12 C -0.11 -1.68 5.88 -26.68 -0.16 -1.83 16 13 C -0.13 -2.13 5.33 -26.60 -0.14 -2.27 16 14 C 0.20 4.17 1.99 -68.75 -0.14 4.03 16 15 H 0.03 0.66 7.53 -51.93 -0.39 0.27 16 16 C -0.05 -1.05 2.68 -104.64 -0.28 -1.33 16 17 C -0.02 -0.32 6.89 -39.58 -0.27 -0.59 16 18 C -0.12 -2.26 10.05 -39.59 -0.40 -2.66 16 19 C -0.11 -2.10 9.83 -39.55 -0.39 -2.49 16 20 C -0.05 -1.05 6.32 -39.50 -0.25 -1.30 16 21 Cl -0.10 -1.82 28.96 -51.86 -1.50 -3.33 16 22 C -0.11 -2.23 7.28 -39.55 -0.29 -2.52 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.13 2.81 7.07 -52.48 -0.37 2.44 16 33 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 34 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.11 2.28 7.69 -52.48 -0.40 1.88 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -26.98 288.90 -8.79 -35.77 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.03 Total: -0.91 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.66 Total: -15.98 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.43 Total: -37.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.38 Total: 17.20 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.50 Total: -3.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.98 -8.79 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370211151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.008 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds