Wall clock time and date at job start Mon Mar 30 2020 06:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47235 * 274.07708 * 3 2 1 5 5 H 1.48501 * 109.47093 * 34.08073 * 3 2 1 6 6 H 1.48502 * 109.47117 * 154.07946 * 3 2 1 7 7 C 1.38816 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00415 * 336.35608 * 7 2 1 9 9 N 1.36937 * 120.00295 * 156.34899 * 7 2 1 10 10 C 1.46921 * 120.63077 * 121.49301 * 9 7 2 11 11 C 1.53195 * 108.77664 * 126.37257 * 10 9 7 12 12 C 1.53040 * 109.30838 * 54.63739 * 11 10 9 13 13 C 1.53067 * 109.66105 * 298.70181 * 12 11 10 14 14 C 1.46931 * 120.63137 * 301.48099 * 9 7 2 15 15 H 1.09002 * 109.58812 * 113.69890 * 14 9 7 16 16 C 1.50693 * 109.58520 * 353.41149 * 14 9 7 17 17 C 1.38260 * 119.99508 * 311.07410 * 16 14 9 18 18 C 1.38224 * 120.02847 * 180.02562 * 17 16 14 19 19 C 1.38236 * 120.01151 * 359.68717 * 18 17 16 20 20 C 1.38334 * 119.98233 * 0.57100 * 19 18 17 21 21 Cl 1.73602 * 120.01033 * 179.72343 * 20 19 18 22 22 C 1.38188 * 119.99339 * 131.06072 * 16 14 9 23 23 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.59192 * 246.16593 * 10 9 7 25 25 H 1.09010 * 109.58691 * 6.44657 * 10 9 7 26 26 H 1.08997 * 109.49705 * 174.58712 * 11 10 9 27 27 H 1.08998 * 109.49681 * 294.68940 * 11 10 9 28 28 H 1.09007 * 109.45826 * 58.65880 * 12 11 10 29 29 H 1.09000 * 109.45934 * 178.62559 * 12 11 10 30 30 H 1.09003 * 109.38897 * 301.28007 * 13 12 11 31 31 H 1.09002 * 109.62480 * 181.17564 * 13 12 11 32 32 H 1.08004 * 119.98916 * 0.02562 * 17 16 14 33 33 H 1.08006 * 119.99324 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.00684 * 180.29744 * 19 18 17 35 35 H 1.08005 * 120.00845 * 359.96798 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4114 2.0962 -1.3965 5 1 1.4934 2.6262 0.7846 6 1 3.5882 1.4168 0.6120 7 6 2.0102 -1.2022 -0.0005 8 1 1.5383 -2.0984 0.3742 9 7 3.2933 -1.2518 -0.4763 10 6 4.3933 -1.7097 0.3834 11 6 5.1420 -2.8380 -0.3330 12 6 5.5847 -2.3536 -1.7155 13 6 4.3557 -1.9838 -2.5496 14 6 3.5962 -0.8483 -1.8563 15 1 4.2121 0.0510 -1.8473 16 6 2.3122 -0.5740 -2.5957 17 6 1.2778 -1.4901 -2.5481 18 6 0.0999 -1.2394 -3.2265 19 6 -0.0469 -0.0693 -3.9478 20 6 0.9896 0.8452 -4.0002 21 17 0.8086 2.3116 -4.9117 22 6 2.1686 0.5935 -3.3211 23 1 -0.4850 0.8400 0.0004 24 1 5.0762 -0.8821 0.5751 25 1 3.9906 -2.0773 1.3273 26 1 6.0177 -3.1215 0.2508 27 1 4.4831 -3.6993 -0.4431 28 1 6.2237 -1.4772 -1.6058 29 1 6.1390 -3.1464 -2.2178 30 1 3.7053 -2.8538 -2.6410 31 1 4.6705 -1.6587 -3.5412 32 1 1.3901 -2.4021 -1.9806 33 1 -0.7076 -1.9557 -3.1893 34 1 -0.9691 0.1287 -4.4740 35 1 2.9764 1.3095 -3.3576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370211151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:24 Heat of formation + Delta-G solvation = 18.455073 kcal Electronic energy + Delta-G solvation = -18841.563862 eV Core-core repulsion = 16057.848003 eV Total energy + Delta-G solvation = -2783.715859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73355 -38.68433 -37.23541 -34.92975 -33.36007 -32.59999 -31.46935 -29.81720 -27.07609 -24.49851 -23.52279 -23.41409 -21.91971 -20.72189 -18.87190 -17.55982 -16.95007 -16.43343 -16.21964 -15.57023 -15.14665 -15.03897 -14.77907 -14.60845 -14.38876 -14.24619 -13.94505 -13.29979 -13.12443 -12.75755 -12.63817 -12.45606 -12.20223 -12.08193 -11.99365 -11.85428 -11.77712 -11.51087 -11.20767 -11.11458 -10.48930 -9.56275 -9.20580 -8.28323 -8.08511 -5.70693 0.52501 0.55753 1.25448 1.35240 1.44546 1.50199 2.49329 2.89166 3.17819 3.53593 3.88281 4.06439 4.15426 4.23964 4.28539 4.41109 4.48700 4.59196 4.70562 4.75714 4.82185 4.96216 5.08724 5.11502 5.16726 5.24196 5.31899 5.35075 5.37035 5.43604 5.62729 5.70661 5.93039 6.05510 6.14843 6.41257 7.18605 7.64739 8.27332 8.97907 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.009309 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.151605 B = 3007.245615 C = 3452.317268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.050 3.950 3 Si 0.884 3.116 4 H -0.255 1.255 5 H -0.315 1.315 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.034 0.966 9 N -0.609 5.609 10 C 0.135 3.865 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.119 4.119 14 C 0.200 3.800 15 H 0.024 0.976 16 C -0.060 4.060 17 C -0.029 4.029 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.059 4.059 21 Cl -0.085 7.085 22 C -0.122 4.122 23 H 0.258 0.742 24 H 0.017 0.983 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -2.473 -8.024 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.153 4.153 3 Si 0.712 3.288 4 H -0.180 1.180 5 H -0.244 1.244 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.052 0.948 9 N -0.335 5.335 10 C 0.011 3.989 11 C -0.164 4.164 12 C -0.145 4.145 13 C -0.158 4.158 14 C 0.096 3.904 15 H 0.042 0.958 16 C -0.060 4.060 17 C -0.048 4.048 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.085 4.085 21 Cl -0.056 7.056 22 C -0.141 4.141 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.276 -2.253 -8.090 10.484 hybrid contribution -0.105 1.441 0.503 1.529 sum 6.171 -0.812 -7.587 9.813 Atomic orbital electron populations 1.69959 1.07059 1.26854 1.49854 1.26086 0.94841 0.99067 0.95281 0.86691 0.79636 0.83374 0.79081 1.17996 1.24387 1.20029 1.18058 0.88868 0.92193 1.40460 0.94820 1.44374 1.04008 1.78150 1.06988 1.21236 0.89342 0.94693 0.93621 1.21880 0.99706 0.98006 0.96793 1.21412 0.96483 1.01073 0.95497 1.21949 0.97330 0.98105 0.98448 1.19740 0.90978 0.95245 0.84467 0.95848 1.19646 0.97138 0.93402 0.95858 1.20818 0.92250 0.99096 0.92591 1.21111 0.97918 0.97395 0.97175 1.21023 0.97901 0.93549 1.00693 1.20720 0.96898 0.89789 1.01119 1.98296 1.97790 1.36136 1.73392 1.20804 0.97002 0.97348 0.98958 0.93222 0.96511 0.92927 0.90309 0.92799 0.92376 0.90296 0.92335 0.91109 0.86933 0.84758 0.84171 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.89 13.95 21.65 0.30 -50.59 16 2 C 0.05 2.71 3.67 84.86 0.31 3.02 16 3 Si 0.88 44.36 25.76 68.60 1.77 46.13 16 4 H -0.25 -12.26 5.34 99.48 0.53 -11.73 16 5 H -0.32 -16.49 7.11 99.48 0.71 -15.78 16 6 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.27 -13.79 6.65 84.03 0.56 -13.23 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 N -0.61 -26.90 2.08 -679.37 -1.41 -28.31 16 10 C 0.14 5.14 6.52 86.36 0.56 5.70 16 11 C -0.13 -3.68 6.09 30.67 0.19 -3.49 16 12 C -0.11 -2.90 5.88 30.63 0.18 -2.72 16 13 C -0.12 -3.77 5.33 30.68 0.16 -3.61 16 14 C 0.20 7.94 1.99 44.23 0.09 8.03 16 15 H 0.02 0.97 7.53 -2.39 -0.02 0.96 16 16 C -0.06 -2.46 2.68 -19.87 -0.05 -2.52 16 17 C -0.03 -1.20 6.89 22.27 0.15 -1.05 16 18 C -0.12 -4.48 10.05 22.27 0.22 -4.25 16 19 C -0.11 -4.08 9.83 22.29 0.22 -3.86 16 20 C -0.06 -2.22 6.32 22.32 0.14 -2.08 16 21 Cl -0.08 -2.79 28.96 -2.72 -0.08 -2.87 16 22 C -0.12 -4.87 7.28 22.29 0.16 -4.71 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.92 7.87 -2.39 -0.02 1.90 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 5.00 7.07 -2.91 -0.02 4.98 16 33 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.12 4.53 7.69 -2.91 -0.02 4.50 16 Total: -1.00 -57.22 288.90 4.37 -52.85 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.89 Total: 7.54 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 2.90 Total: -24.75 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.11 Total: -78.90 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.77 Total: 46.13 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.08 Total: -2.87 kcal Total: -57.22 4.37 -52.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370211151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.304 kcal (2) G-P(sol) polarization free energy of solvation -57.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds